KCC001739A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001739A_C01 KCC001739A_c01
gaggttcttcggccggttacatGGCACTAACGTATTCAGGGCACGTGCCGCTATCAGGCT
GGGAAAGCCGAGTCGCTCTCGCTTCTAACCACCGGCTCGTGTCAAACCCTTTGCACCTAA
TTCGCTGTATCCGATCCAGCGTCAATGACTGCGTCATCTCTACCAAAGCACCTCCGTGTG
CCCTGGCTACCTGCTTGTTTCATCTCTGCAACCTGCGACCAGCTCCATTACCAGCACCCA
CGACGCACGACTACAGTTGCTTAGCGTTGCAACTTTGCTCAACGTAACCCCAACAACACA
GGCCGCCCGCCCGTCTCACATGGCACGTAGGCGCCAAGTGGAAAAACAAGGAGCTTGGCC
CGCCTAAACAAAGTGACGGTATTGTAACCATGCAGCGCAGACGGAAATGTACCTACTGCT
AAGCGCTTGCATCGGACCGACGAGATATGTCCACGCCATGCACATGTGCTGGAGCATGTG
CTTCTTACAACTTCAATACATCGTGTA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001739A_C01 KCC001739A_c01
         (507 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_149925.2| hypothetical protein XP_149925 [Mus musculus]         32  4.5
ref|NP_114435.1| mosaic serine protease [Homo sapiens] gi|134299...    27  5.1
ref|NP_608533.1| CG2794-PA [Drosophila melanogaster] gi|7296188|...    32  5.9
gb|AAM29633.1| RH71315p [Drosophila melanogaster]                      32  5.9
ref|ZP_00132730.1| hypothetical protein [Haemophilus somnus 2336]      32  5.9

>ref|XP_149925.2| hypothetical protein XP_149925 [Mus musculus]
          Length = 406

 Score = 32.0 bits (71), Expect = 4.5
 Identities = 27/88 (30%), Positives = 41/88 (45%), Gaps = 5/88 (5%)
 Frame = +2

Query: 92  PARVKPFA-----PNSLYPIQRQ*LRHLYQSTSVCPGYLLVSSLQPATSSITSTHDARLQ 256
           PA  KP +     P ++YP+Q       + S SV P  L  +   PA+SS+ ++      
Sbjct: 188 PASRKPLSLALRRPTAVYPVQ-------HHSHSVQPTTLRPAQPPPASSSLIASAKPAPP 240

Query: 257 LLSVATLLNVTPTTQAARPSHMARRRQV 340
           + S AT  NVT   Q++    +A  R V
Sbjct: 241 ISSSATGPNVTNPNQSSAVPQLATSRPV 268

>ref|NP_114435.1| mosaic serine protease [Homo sapiens] gi|13429972|dbj|BAB39742.1|
           mosaic serine protease [Homo sapiens]
          Length = 537

 Score = 26.6 bits (57), Expect(2) = 5.1
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 7/35 (20%)
 Frame = +1

Query: 184 WLPAC-------FISATCDQLHYQHPRRTTTVA*R 267
           WLP C       +   TC QL ++   RTT VA R
Sbjct: 216 WLPICSSNWNDSYSEKTCRQLGFESAHRTTEVAHR 250

 Score = 23.9 bits (50), Expect(2) = 5.1
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +3

Query: 48  PLSGWESRVALASNHRLVSNPLHLIRCIRSSVNDCVISTKAPPC 179
           P+  W+    +    +  S P H +RC    V DC + +    C
Sbjct: 155 PVQFWQGHTGIRYKEQRESCPKHAVRC--DGVVDCKLKSDELGC 196

>ref|NP_608533.1| CG2794-PA [Drosophila melanogaster] gi|7296188|gb|AAF51480.1|
           CG2794-PA [Drosophila melanogaster]
          Length = 700

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 29/89 (32%), Positives = 37/89 (40%), Gaps = 4/89 (4%)
 Frame = -3

Query: 460 HGVDISRRSDASA*Q*VHFRLRCMVTIPSLCLGGPSSLFFHLAPTCH----VRRAGGLCC 293
           HGV +S R DA        RL   V+ P+     P S  F+ AP  H    V  AG   C
Sbjct: 588 HGVLLSYRGDAEN----DARLLLDVSKPT----PPHSTRFYPAPMVHNIVNVSGAGDSFC 639

Query: 292 WGYVEQSCNAKQL*SCVVGAGNGAGRRLQ 206
            G++      + L  C+ G    A R LQ
Sbjct: 640 AGFITALLRGRSLDECIAGGFVAAERALQ 668

>gb|AAM29633.1| RH71315p [Drosophila melanogaster]
          Length = 700

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 29/89 (32%), Positives = 37/89 (40%), Gaps = 4/89 (4%)
 Frame = -3

Query: 460 HGVDISRRSDASA*Q*VHFRLRCMVTIPSLCLGGPSSLFFHLAPTCH----VRRAGGLCC 293
           HGV +S R DA        RL   V+ P+     P S  F+ AP  H    V  AG   C
Sbjct: 588 HGVLLSYRGDAEN----DARLLLDVSKPT----PPHSTRFYPAPMVHNIVNVSGAGDSFC 639

Query: 292 WGYVEQSCNAKQL*SCVVGAGNGAGRRLQ 206
            G++      + L  C+ G    A R LQ
Sbjct: 640 AGFITALLRGRSLDECIAGGFVAAERALQ 668

>ref|ZP_00132730.1| hypothetical protein [Haemophilus somnus 2336]
          Length = 484

 Score = 31.6 bits (70), Expect = 5.9
 Identities = 15/37 (40%), Positives = 22/37 (58%)
 Frame = +2

Query: 242 DARLQLLSVATLLNVTPTTQAARPSHMARRRQVEKQG 352
           D ++QL  +ATL+N  PTTQ + P   A+   V  +G
Sbjct: 119 DLKMQLFDMATLVNNKPTTQESTPQVEAQPNTVPNKG 155



EST assemble image


clone accession position
1 LC011e09_r AV619668 1 530
2 CM088g03_r AV393041 58 548




Chlamydomonas reinhardtii
Kazusa DNA Research Institute