KCC001729A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001729A_C01 KCC001729A_c01
gtgatgatgaaggtgtacgttcatgctgaatcgccatctatttaactgcaagcagccgtt
gcatcagatagaggtggcgaGGCTGTTCGACAACGCCAAGCAGGCGCACAAGGTGACGCT
CAGGTACTACACCGGGCGGCTGGCCGCCTATGACGAGGACTTCCAAAAGGCGGACGAGCA
CCTGAGCTACGCCTTCGAGCACTGCCTCAGCGCCGCGCCCAACAACCTGCGCCGCGTGCT
GCGCTACCTCATACCCGTCAAGATGCTGTTGGGCGTGCTGCCGCGTCCGCAGCTGCTGCA
GCGGTACGGCCTGACCGAATACGAGCCCATCCGCCAGGCGGTTGCAGGCGGCGACCTGGC
GCTGCTGCTCAAGACGTTGGAGGAGAACCAGGTCCGCTTCATCCAGACGGGTGTGTTCCT
GCTTCTGGACAAGCTGCAGCTGGTGGTGGTGCGGCGGCTGTTTCGCAAGTGCGCACTGGT
GCACGCCGAGATGAACCCGGCCAAGGCGCACCAGGTGCCGCTAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001729A_C01 KCC001729A_c01
         (525 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_179546.2| expressed protein [Arabidopsis thaliana] gi|264...   142  3e-33
dbj|BAA91407.1| unnamed protein product [Homo sapiens]                134  5e-31
gb|AAG09695.1|AF183426_1 HT004 protein [Homo sapiens]                 134  5e-31
dbj|BAA91542.1| unnamed protein product [Homo sapiens] gi|104351...   134  5e-31
dbj|BAB15768.1| FLJ00071 protein [Homo sapiens]                       134  5e-31

>ref|NP_179546.2| expressed protein [Arabidopsis thaliana]
           gi|26452802|dbj|BAC43481.1| unknown protein [Arabidopsis
           thaliana]
          Length = 413

 Score =  142 bits (358), Expect = 3e-33
 Identities = 71/161 (44%), Positives = 108/161 (66%), Gaps = 2/161 (1%)
 Frame = +2

Query: 47  CKQPLHQIEVARLFDNAK--QAHKVTLRYYTGRLAAYDEDFQKADEHLSYAFEHCLSAAP 220
           C+  +  IE AR+FD  +  +  KVT  YYTGRL  ++E+F  AD  LSYA ++C     
Sbjct: 192 CRSVIRSIETARIFDFEEFPRRDKVTYMYYTGRLEVFNENFPAADTKLSYALQNCNPKRE 251

Query: 221 NNLRRVLRYLIPVKMLLGVLPRPQLLQRYGLTEYEPIRQAVAGGDLALLLKTLEENQVRF 400
            N+R +L+YL+PVK+ LG++P+ +LL+ Y L EY  I QA+  GDL LL   L+E++ RF
Sbjct: 252 RNIRMILKYLVPVKLSLGIIPKDELLRNYNLHEYTKIVQALRKGDLRLLRHALQEHEDRF 311

Query: 401 IQTGVFLLLDKLQLVVVRRLFRKCALVHAEMNPAKAHQVPL 523
           +++GV+L+L+KL+L V +RL +K  +     +PA+AHQ+ L
Sbjct: 312 LRSGVYLVLEKLELQVYQRLMKKIYINQKLSDPARAHQLKL 352

>dbj|BAA91407.1| unnamed protein product [Homo sapiens]
          Length = 376

 Score =  134 bits (338), Expect = 5e-31
 Identities = 69/168 (41%), Positives = 111/168 (66%)
 Frame = +2

Query: 20  FMLNRHLFNCKQPLHQIEVARLFDNAKQAHKVTLRYYTGRLAAYDEDFQKADEHLSYAFE 199
           F +N+ L  CK  +  I+ + L D+   A +VT +YY GR A +D DF++A+E+LS+AFE
Sbjct: 157 FKINK-LHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFE 215

Query: 200 HCLSAAPNNLRRVLRYLIPVKMLLGVLPRPQLLQRYGLTEYEPIRQAVAGGDLALLLKTL 379
           HC  ++  N R +L YL+PVKMLLG +P  +LL++Y L ++  + +AV+ G+L LL + L
Sbjct: 216 HCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEAL 275

Query: 380 EENQVRFIQTGVFLLLDKLQLVVVRRLFRKCALVHAEMNPAKAHQVPL 523
            +++  FI+ G+FL+L+KL+++  R LF+K  L+       K HQ+ L
Sbjct: 276 AKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLL------LKTHQLSL 317

>gb|AAG09695.1|AF183426_1 HT004 protein [Homo sapiens]
          Length = 379

 Score =  134 bits (338), Expect = 5e-31
 Identities = 69/168 (41%), Positives = 111/168 (66%)
 Frame = +2

Query: 20  FMLNRHLFNCKQPLHQIEVARLFDNAKQAHKVTLRYYTGRLAAYDEDFQKADEHLSYAFE 199
           F +N+ L  CK  +  I+ + L D+   A +VT +YY GR A +D DF++A+E+LS+AFE
Sbjct: 160 FKINK-LHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFE 218

Query: 200 HCLSAAPNNLRRVLRYLIPVKMLLGVLPRPQLLQRYGLTEYEPIRQAVAGGDLALLLKTL 379
           HC  ++  N R +L YL+PVKMLLG +P  +LL++Y L ++  + +AV+ G+L LL + L
Sbjct: 219 HCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEAL 278

Query: 380 EENQVRFIQTGVFLLLDKLQLVVVRRLFRKCALVHAEMNPAKAHQVPL 523
            +++  FI+ G+FL+L+KL+++  R LF+K  L+       K HQ+ L
Sbjct: 279 AKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLL------LKTHQLSL 320

>dbj|BAA91542.1| unnamed protein product [Homo sapiens] gi|10435195|dbj|BAB14521.1|
           unnamed protein product [Homo sapiens]
           gi|16741618|gb|AAH16614.1| FLJ11305 protein [Homo
           sapiens]
          Length = 399

 Score =  134 bits (338), Expect = 5e-31
 Identities = 69/168 (41%), Positives = 111/168 (66%)
 Frame = +2

Query: 20  FMLNRHLFNCKQPLHQIEVARLFDNAKQAHKVTLRYYTGRLAAYDEDFQKADEHLSYAFE 199
           F +N+ L  CK  +  I+ + L D+   A +VT +YY GR A +D DF++A+E+LS+AFE
Sbjct: 180 FKINK-LHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFE 238

Query: 200 HCLSAAPNNLRRVLRYLIPVKMLLGVLPRPQLLQRYGLTEYEPIRQAVAGGDLALLLKTL 379
           HC  ++  N R +L YL+PVKMLLG +P  +LL++Y L ++  + +AV+ G+L LL + L
Sbjct: 239 HCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEAL 298

Query: 380 EENQVRFIQTGVFLLLDKLQLVVVRRLFRKCALVHAEMNPAKAHQVPL 523
            +++  FI+ G+FL+L+KL+++  R LF+K  L+       K HQ+ L
Sbjct: 299 AKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLL------LKTHQLSL 340

>dbj|BAB15768.1| FLJ00071 protein [Homo sapiens]
          Length = 250

 Score =  134 bits (338), Expect = 5e-31
 Identities = 69/168 (41%), Positives = 111/168 (66%)
 Frame = +2

Query: 20  FMLNRHLFNCKQPLHQIEVARLFDNAKQAHKVTLRYYTGRLAAYDEDFQKADEHLSYAFE 199
           F +N+ L  CK  +  I+ + L D+   A +VT +YY GR A +D DF++A+E+LS+AFE
Sbjct: 31  FKINK-LHLCKPLIRAIDSSNLKDDYSTAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFE 89

Query: 200 HCLSAAPNNLRRVLRYLIPVKMLLGVLPRPQLLQRYGLTEYEPIRQAVAGGDLALLLKTL 379
           HC  ++  N R +L YL+PVKMLLG +P  +LL++Y L ++  + +AV+ G+L LL + L
Sbjct: 90  HCHRSSQKNKRMILIYLLPVKMLLGHMPTVELLKKYHLMQFAEVTRAVSEGNLLLLHEAL 149

Query: 380 EENQVRFIQTGVFLLLDKLQLVVVRRLFRKCALVHAEMNPAKAHQVPL 523
            +++  FI+ G+FL+L+KL+++  R LF+K  L+       K HQ+ L
Sbjct: 150 AKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLL------LKTHQLSL 191



EST assemble image


clone accession position
1 CM087d06_r AV392420 1 458
2 MXL050g09_r BP095999 143 525




Chlamydomonas reinhardtii
Kazusa DNA Research Institute