KCC001724A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001724A_C01 KCC001724A_c01
GAAAACATTTCAGGACGGGCTCTGTTCCCCGAGTTGCGTTTTCGCAAGACCTGCTGTTGG
CCGCGGGCCCACGAGCAATTATCAACATATACCACTTATTAGATCAAGTATTATCTACCT
GAATGACCTAGGTGCAAGGGGCAGGCTGCTTGCGTTTGTTACGCAAGCCTTGGAATTTCC
TTTGTGACCTGCCCGGCGAGGACTTGGACCTGACATAGGAGCAAGCAGCAGCCATGGATG
ACTCTATGGACTACCCTGACCGCGACGGGGACGACCTGGACCAGTTCCAGGGCACCGCGC
GCTCGCAGGTCGTGCAGAACCAGCCGCACGACGAGGAGGTGAACCTGAGTGAGTCGGAGA
GCTTCGCGGGAGCGGATGAGCCTCCAGCTGCGCCTAGAGATGCGTCGCTCATAGAGTCAC
ACGACATGGACGAGGGGCCAGCTGCTCCAGCGCGGACACTCTCACCAACGGGCTATGAGG
CTGGAAAGCACGCACCTGGCGGCATCGCCAACTCGGACGAGGCACCGCCGGGTGCTTACA
ACGCACAGGAGTACAAGCACCTGAACGTGGGCGAGGACGTGCGCGAGCTGTTCTCCTACA
TCGGCCGCTACAAGCCGCAGACGGTGGAGCTGGACACGCGCATCAAGCCCTTCATCCCTG
ACTACATCCCCGCGGTGGGCGGCATCGACGAGTTCATCAAGGTGCCGCGACCCGACACCA
AGCCCGACTACCTGGGGCTCAAGGTTCTGGACGAGCCGGCCGCCAAGCAGTCGGACCCCA
CGGTGCTGACGCTGCAGCTGCGGCAGCTGTCCAAGGAGGCGCCGGGCGCCAAGGCCGACA
TGGTGGGGCGGCTGGAGCACACCGACGAGAACAAGGCCAAGAAGATCCAGCAGTGGATCG
CCTCCATCAACGACATCCACAAGGCCAAGCCGGCCGCCACCGTCAACTACAGCAAGCGCA
TGCCAGAGATCGAGGCGCTGATGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001724A_C01 KCC001724A_c01
         (985 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB96545.1| hypothetical protein [Mus musculus]                   172  8e-42
gb|AAH10326.1| 1500035H01Rik protein [Mus musculus]                   172  8e-42
ref|XP_217120.2| similar to hypothetical protein FLJ21827 [Rattu...   172  8e-42
ref|NP_076320.2| RIKEN cDNA 1500035H01 [Mus musculus] gi|1283785...   172  8e-42
ref|NP_064538.2| hypothetical protein FLJ21827 [Homo sapiens] gi...   171  2e-41

>emb|CAB96545.1| hypothetical protein [Mus musculus]
          Length = 300

 Score =  172 bits (436), Expect = 8e-42
 Identities = 83/151 (54%), Positives = 113/151 (73%)
 Frame = +3

Query: 531 GAYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPR 710
           GAY+  +Y+HL V  +++ELF YI RY PQ ++LD ++KPFIPD+IPAVG ID F+KVPR
Sbjct: 59  GAYDPADYEHLPVSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPR 118

Query: 711 PDTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQ 890
           PD KPD+LGL VLDEP+ KQSDPTVL+L L + SK+    +   V  LE  ++N  K I 
Sbjct: 119 PDGKPDHLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKN-PKAID 177

Query: 891 QWIASINDIHKAKPAATVNYSKRMPEIEALM 983
            WI SI+++H++KP ATV+Y++ MP+I+ LM
Sbjct: 178 TWIESISELHRSKPPATVHYTRPMPDIDTLM 208

>gb|AAH10326.1| 1500035H01Rik protein [Mus musculus]
          Length = 301

 Score =  172 bits (436), Expect = 8e-42
 Identities = 83/151 (54%), Positives = 113/151 (73%)
 Frame = +3

Query: 531 GAYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPR 710
           GAY+  +Y+HL V  +++ELF YI RY PQ ++LD ++KPFIPD+IPAVG ID F+KVPR
Sbjct: 59  GAYDPADYEHLPVSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPR 118

Query: 711 PDTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQ 890
           PD KPD+LGL VLDEP+ KQSDPTVL+L L + SK+    +   V  LE  ++N  K I 
Sbjct: 119 PDGKPDHLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKN-PKAID 177

Query: 891 QWIASINDIHKAKPAATVNYSKRMPEIEALM 983
            WI SI+++H++KP ATV+Y++ MP+I+ LM
Sbjct: 178 TWIESISELHRSKPPATVHYTRPMPDIDTLM 208

>ref|XP_217120.2| similar to hypothetical protein FLJ21827 [Rattus norvegicus]
          Length = 301

 Score =  172 bits (436), Expect = 8e-42
 Identities = 83/151 (54%), Positives = 113/151 (73%)
 Frame = +3

Query: 531 GAYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPR 710
           GAY+  +Y+HL V  +++ELF YI RY PQ ++LD ++KPFIPD+IPAVG ID F+KVPR
Sbjct: 59  GAYDPADYEHLPVSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPR 118

Query: 711 PDTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQ 890
           PD KPD+LGL VLDEP+ KQSDPTVL+L L + SK+    +   V  LE  ++N  K I 
Sbjct: 119 PDGKPDHLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKN-PKAID 177

Query: 891 QWIASINDIHKAKPAATVNYSKRMPEIEALM 983
            WI SI+++H++KP ATV+Y++ MP+I+ LM
Sbjct: 178 TWIESISELHRSKPPATVHYTRPMPDIDTLM 208

>ref|NP_076320.2| RIKEN cDNA 1500035H01 [Mus musculus] gi|12837852|dbj|BAB23974.1|
           unnamed protein product [Mus musculus]
           gi|26328657|dbj|BAC28067.1| unnamed protein product [Mus
           musculus]
          Length = 301

 Score =  172 bits (436), Expect = 8e-42
 Identities = 83/151 (54%), Positives = 113/151 (73%)
 Frame = +3

Query: 531 GAYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPR 710
           GAY+  +Y+HL V  +++ELF YI RY PQ ++LD ++KPFIPD+IPAVG ID F+KVPR
Sbjct: 59  GAYDPADYEHLPVSAEIKELFEYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPR 118

Query: 711 PDTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQ 890
           PD KPD+LGL VLDEP+ KQSDPTVL+L L + SK+    +   V  LE  ++N  K I 
Sbjct: 119 PDGKPDHLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKN-PKAID 177

Query: 891 QWIASINDIHKAKPAATVNYSKRMPEIEALM 983
            WI SI+++H++KP ATV+Y++ MP+I+ LM
Sbjct: 178 TWIESISELHRSKPPATVHYTRPMPDIDTLM 208

>ref|NP_064538.2| hypothetical protein FLJ21827 [Homo sapiens]
           gi|10438008|dbj|BAB15146.1| unnamed protein product
           [Homo sapiens]
          Length = 355

 Score =  171 bits (432), Expect = 2e-41
 Identities = 83/151 (54%), Positives = 112/151 (73%)
 Frame = +3

Query: 531 GAYNAQEYKHLNVGEDVRELFSYIGRYKPQTVELDTRIKPFIPDYIPAVGGIDEFIKVPR 710
           GAY+  +Y+HL V  +++ELF YI RY PQ ++LD ++KPFIPD+IPAVG ID F+KVPR
Sbjct: 113 GAYDPADYEHLPVSAEIKELFQYISRYTPQLIDLDHKLKPFIPDFIPAVGDIDAFLKVPR 172

Query: 711 PDTKPDYLGLKVLDEPAAKQSDPTVLTLQLRQLSKEAPGAKADMVGRLEHTDENKAKKIQ 890
           PD KPD LGL VLDEP+ KQSDPTVL+L L + SK+    +   V  LE  ++N  K I 
Sbjct: 173 PDGKPDNLGLLVLDEPSTKQSDPTVLSLWLTENSKQHNITQHMKVKSLEDAEKN-PKAID 231

Query: 891 QWIASINDIHKAKPAATVNYSKRMPEIEALM 983
            WI SI+++H++KP ATV+Y++ MP+I+ LM
Sbjct: 232 TWIESISELHRSKPPATVHYTRPMPDIDTLM 262



EST assemble image


clone accession position
1 MX011g08_r BP086571 1 382
2 MX012h12_r BP086619 1 422
3 HC002b06_r AV631955 16 510
4 CM086f04_r AV392549 35 555
5 HC011c07_r AV632683 105 595
6 LC051c04_r AV622560 447 985




Chlamydomonas reinhardtii
Kazusa DNA Research Institute