Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001723A_C01 KCC001723A_c01
(557 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC65604.1| mKIAA0595 protein [Mus musculus] 37 0.18
ref|NP_648659.1| CG17689-PA [Drosophila melanogaster] gi|1072794... 36 0.31
ref|XP_215259.2| similar to mKIAA0595 protein [Rattus norvegicus] 34 1.2
gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest... 33 2.0
ref|ZP_00014221.1| COG1142: Fe-S-cluster-containing hydrogenase ... 33 2.0
>dbj|BAC65604.1| mKIAA0595 protein [Mus musculus]
Length = 1646
Score = 37.0 bits (84), Expect = 0.18
Identities = 33/104 (31%), Positives = 48/104 (45%), Gaps = 12/104 (11%)
Frame = +2
Query: 266 PKTPEQQAANRWY------VAHLQSGWPRNADRAKSSEPCGSQ--SVLSCSTHVFSATRA 421
P+ ++Q + R Y V+ GW R+ S GS S S S+ V S++R+
Sbjct: 1379 PEPSDKQQSMRCYRKACRSVSPSSRGWQGRRGRSSRSVSSGSSRTSEASSSSSVSSSSRS 1438
Query: 422 AAHHHSP*SPEQQQPD*KC----RHRCCPSLISSSSSLSSCSAK 541
+ S P ++ C R R C S SSSSS SSCS++
Sbjct: 1439 RSRSRSFSPPNKRWRRSSCSSSGRSRRCSSSSSSSSSSSSCSSR 1482
>ref|NP_648659.1| CG17689-PA [Drosophila melanogaster] gi|10727942|gb|AAF49803.2|
CG17689-PA [Drosophila melanogaster]
Length = 1848
Score = 36.2 bits (82), Expect = 0.31
Identities = 38/147 (25%), Positives = 56/147 (37%), Gaps = 14/147 (9%)
Frame = +3
Query: 144 TCSTPRAQITNMHPQPKHLTSYTVTLAQLRTCTHPLPVREGPKLQNNRPQIVGMLLTCSL 323
T +TP T + P P +S T T++ + T P PV P L + P V L+ S
Sbjct: 129 TSATPSGLPTAIAPSPSSCSSSTTTMSNFNSITSPSPV--VPDLLLSTPPGVNSSLSNSS 186
Query: 324 DGPATQIGRNLASLAAPSP--------------YYHAQHMCSALLEPLHTIIPRNRQNSS 461
G A + + PS + H H L P + R + NSS
Sbjct: 187 TG-AASVSSKKSEKRPPSANSTASGGGHHLHHHHLHQTHNHHVLASPTSSPSKRQKSNSS 245
Query: 462 SRTESAGTAAARP*SAPPPLSAAALRS 542
S+ S+ + + SA P S + S
Sbjct: 246 SKESSSSSRS----SAIPAASVSTATS 268
>ref|XP_215259.2| similar to mKIAA0595 protein [Rattus norvegicus]
Length = 1728
Score = 34.3 bits (77), Expect = 1.2
Identities = 36/108 (33%), Positives = 49/108 (45%), Gaps = 12/108 (11%)
Frame = +2
Query: 257 PGRPKTPEQQAANRWYVAHLQS------GWPRNADRAKSSEPCGSQ--SVLSCSTHVFSA 412
P P P++Q + R Y +S GW R+ S GS S S S+ V S+
Sbjct: 1461 PSEP--PDKQRSMRCYRKACRSASPPSRGWQGRRGRSSRSVSSGSSRTSEASSSSSVSSS 1518
Query: 413 TRAAAHHHSP*SPEQQQPD*KC----RHRCCPSLISSSSSLSSCSAKR 544
+R+ + SP P ++ C R R C S SSSSS SS S+ R
Sbjct: 1519 SRSRSRSLSP--PNKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSR 1564
>gb|AAK00309.1|AF315819_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Botryocladia
uvarioides]
Length = 1712
Score = 33.5 bits (75), Expect = 2.0
Identities = 22/72 (30%), Positives = 32/72 (43%)
Frame = +2
Query: 239 YTSLAGPGRPKTPEQQAANRWYVAHLQSGWPRNADRAKSSEPCGSQSVLSCSTHVFSATR 418
Y+S GPGRP T Y A G+ + + GS S ++ VF+
Sbjct: 1617 YSSATGPGRPGTGAYSPTGPSYNAAASPGYQSGINYSP-----GSPHTYSPNSPVFTPRS 1671
Query: 419 AAAHHHSP*SPE 454
AAH +SP +P+
Sbjct: 1672 PAAHGYSPSTPQ 1683
>ref|ZP_00014221.1| COG1142: Fe-S-cluster-containing hydrogenase components 2
[Rhodospirillum rubrum]
Length = 176
Score = 33.5 bits (75), Expect = 2.0
Identities = 17/40 (42%), Positives = 22/40 (54%)
Frame = -2
Query: 235 VRSCASVTV*EVRCLGCGCMFVICALGVEQVMKAACCGGD 116
V S SV V + RC+GC + C G QV+KA+ G D
Sbjct: 77 VYSHDSVQVNQARCMGCKNCVMACPFGAMQVVKASAHGND 116
