KCC001715A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001715A_C01 KCC001715A_c01
tAGTCCCCTATGCACTGCCACTGTGGGTGACGCACTTAAAGCAGCAAAGTCAAAGCTAAG
CGAAGAGGACACGCGAAGAGGAGTGCCCATCGGTTCAAAGGAAGTCCGCTTCCTCAGTGT
CCTGTGTTACAATCATAAGTTAGTGGACCTGGATGAACGTATGAAGGCCGCGCATGAGCA
GCAGCTGCAGACCAGCAAGATGCTTGAGGAGCGAGCGGCAGAGGACGAGGCGTTTCGGCG
GCTCGTGCTGAAGCCCGAGGTCATCGCTCTCGCTAGCACGTTCATTGCCAGAGTCATTTC
TGGCAAGCCTCGGAGCGGGTCAACCTGCAGCAGCGGCATGAAGGGTTTCATCAAAGAGAA
CAGCCAGCTTGTGGGTGATCTTGCCAAGGCGGCCAAGCTGGATTGCTCACCTGAAGAGTT
CGCGGAGTTTGCGGACAAGAACTACACGCTGAACGATGACCAGCACAAAGCGCTGGACGA
GGTTCTCATCAACTCGGCGAAGAAGCTGAAGGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001715A_C01 KCC001715A_c01
         (513 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_568144.1| small heat shock-related protein (RTM2) [Arabid...    39  0.030
ref|NP_596690.1| hypothetical serine-rich secreted protein [Schi...    35  0.43
pir||H96765 hypothetical protein F25P22.26 [imported] - Arabidop...    34  1.2
ref|NP_177525.2| proline-rich protein family [Arabidopsis thalia...    34  1.2
pir||A49302 GTP cyclohydrolase I (EC 3.5.4.16), exon 1a-containi...    33  2.1

>ref|NP_568144.1| small heat shock-related protein (RTM2) [Arabidopsis thaliana]
           gi|7407073|gb|AAF61902.1|AF208051_1 small heat
           shock-like protein [Arabidopsis thaliana]
           gi|9758464|dbj|BAB08993.1| gene_id:MUK11.22~unknown
           protein [Arabidopsis thaliana]
          Length = 366

 Score = 39.3 bits (90), Expect = 0.030
 Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
 Frame = +2

Query: 155 ERMKAAHEQQLQTSKMLEERAAEDEAFRRLVLKPEVIALASTFIARVISGKPRSGSTCSS 334
           E MK A E +L+  K+ E ++ ++   +  +LKPEV+   S  +A   + KP SGS   S
Sbjct: 222 EDMKLAEEAKLK--KIQERKSVDESGEKEKILKPEVVYTKSGHVA---TPKPESGSGLKS 276

Query: 335 GMKG---FIKENSQLVGDLAKAAK 397
           G  G    +K   + +G+L +  K
Sbjct: 277 GFGGVGEVVKSAEEKLGNLVEKEK 300

>ref|NP_596690.1| hypothetical serine-rich secreted protein [Schizosaccharomyces
           pombe] gi|7493381|pir||T39903 serine-rich protein -
           fission yeast (Schizosaccharomyces pombe)
           gi|3873550|emb|CAA22127.1| SPBC215.13
           [Schizosaccharomyces pombe]
          Length = 534

 Score = 35.4 bits (80), Expect = 0.43
 Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 1/157 (0%)
 Frame = -1

Query: 483 TSSSALCWSSFSV*FLSANSANSSGEQSSLAALARS-PTSWLFSLMKPFMPLLQVDPLRG 307
           +SS  L  S+FS    S +S+  S   +S +  + + PTS   S +     +        
Sbjct: 165 SSSDPLTSSTFSSLSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSS 224

Query: 306 LPEMTLAMNVLARAMTSGFSTSRRNASSSAARSSSILLVCSCCSCAAFIRSSRSTNL*L* 127
               TL  + L+ +     S+S  + SSS + SSS     S  S ++ I SS S      
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSS------ 278

Query: 126 HRTLRKRTSFEPMGTPLRVSSSLSFDFAALSASPTVA 16
                  +S  P  T   +SSS S   +  S S T++
Sbjct: 279 -------SSSSPTSTSSTISSSSSSSSSPTSTSSTIS 308

>pir||H96765 hypothetical protein F25P22.26 [imported] - Arabidopsis thaliana
           gi|12324211|gb|AAG52077.1|AC012679_15 putative
           proline-rich protein precursor; 93710-91881 [Arabidopsis
           thaliana]
          Length = 338

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (58%)
 Frame = -2

Query: 260 PRASARAAETPRPLPLAPQASCWSAAAAHARPSYVHP 150
           P+A  R   TP+P+P+ P     SA +A ++P + HP
Sbjct: 68  PQAPIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSHP 104

>ref|NP_177525.2| proline-rich protein family [Arabidopsis thaliana]
           gi|17979388|gb|AAL49919.1| putative proline-rich protein
           precursor [Arabidopsis thaliana]
           gi|20465539|gb|AAM20252.1| putative proline-rich protein
           precursor [Arabidopsis thaliana]
          Length = 388

 Score = 33.9 bits (76), Expect = 1.2
 Identities = 14/37 (37%), Positives = 22/37 (58%)
 Frame = -2

Query: 260 PRASARAAETPRPLPLAPQASCWSAAAAHARPSYVHP 150
           P+A  R   TP+P+P+ P     SA +A ++P + HP
Sbjct: 118 PQAPIRKHPTPQPMPMPPPPPSVSANSAQSQPRFSHP 154

>pir||A49302 GTP cyclohydrolase I (EC 3.5.4.16), exon 1a-containing form - fruit
           fly (Drosophila melanogaster) gi|405084|gb|AAC04308.1|
           GTP cyclohydrolase I [Drosophila melanogaster]
          Length = 274

 Score = 33.1 bits (74), Expect = 2.1
 Identities = 20/48 (41%), Positives = 27/48 (55%)
 Frame = -3

Query: 307 LARNDSGNERASESDDLGLQHEPPKRLVLCRSLLKHLAGLQLLLMRGL 164
           LA N SG+E+ +   DL L H+PP R     +LL  +A    LL+ GL
Sbjct: 61  LASNGSGHEKCTFHHDLELDHKPPTR----EALLPDMARSYRLLLGGL 104



EST assemble image


clone accession position
1 LC065f07_r AV623561 1 523
2 LC058g09_r AV623091 2 508
3 HC094f12_r AV639076 3 413
4 CM084e04_r AV392578 8 509
5 MX220d07_r BP090202 19 191
6 HC005d07_r AV632216 19 513
7 MX230a10_r BP090853 28 464




Chlamydomonas reinhardtii
Kazusa DNA Research Institute