Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001714A_C01 KCC001714A_c01
(547 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAP79158.1| ribosomal protein rpL28 [Bigelowiella natans] 120 1e-26
ref|NP_565765.1| 50S ribosomal protein L28, chloroplast precurso... 95 5e-19
pir||F84745 probable chloroplast 50S ribosomal protein L28 [impo... 95 5e-19
sp|P30956|RK28_TOBAC 50S RIBOSOMAL PROTEIN L28, CHLOROPLAST PREC... 94 9e-19
ref|NP_683251.1| 50S ribosomal protein L28 [Thermosynechococcus ... 94 1e-18
>gb|AAP79158.1| ribosomal protein rpL28 [Bigelowiella natans]
Length = 241
Score = 120 bits (301), Expect = 1e-26
Identities = 70/160 (43%), Positives = 97/160 (59%), Gaps = 12/160 (7%)
Frame = +2
Query: 101 LSMRSSIVG-QSLAFKPATAQVRVA---RVLTVDAKKVCDLTGKKRNKANSVCFSNKKSR 268
+S R+S G ++L +T VA R + + + C LTGK A CFS+K++
Sbjct: 29 VSFRTSTTGGENLEAVMSTISRNVAVNGRRNQIASGRRCGLTGKSGTTAYKYCFSHKRAT 88
Query: 269 KWQEPNLQNKKVFWEEGQRWVKLRICTKAIKTLENKGIATMAAEAGIDLWKLPFEDARPQ 448
K Q PN+Q K VFW EGQR VK+++ T A+K+++ KG+ MA EAGIDL KLPF+D RP+
Sbjct: 89 KRQHPNIQQKYVFWPEGQRMVKIKLSTSALKSIDKKGLQVMAKEAGIDLNKLPFKDMRPE 148
Query: 449 RKAYLAENAGKVPVG--------SNPRAMKNAEKLASSKK 544
R+ Y ++ +VPV MKNAEKLA+SKK
Sbjct: 149 RQEYKEKHKMEVPVSKKWVSGYYKKQHRMKNAEKLAASKK 188
>ref|NP_565765.1| 50S ribosomal protein L28, chloroplast precursor (CL28)
[Arabidopsis thaliana] gi|21542433|sp|O22795|RK28_ARATH
50S ribosomal protein L28, chloroplast precursor
gi|18252877|gb|AAL62365.1| putative chloroplast 50S
ribosomal protein L28 [Arabidopsis thaliana]
gi|20196843|gb|AAB80662.2| putative chloroplast 50S
ribosomal protein L28 [Arabidopsis thaliana]
gi|21387067|gb|AAM47937.1| putative chloroplast 50S
ribosomal protein L28 [Arabidopsis thaliana]
gi|21592705|gb|AAM64654.1| putative chloroplast 50S
ribosomal protein L28 [Arabidopsis thaliana]
Length = 143
Score = 95.1 bits (235), Expect = 5e-19
Identities = 51/124 (41%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Frame = +2
Query: 68 SFTAPKVAAMSLS-MRSSIVGQSLAFKPATAQVRVAR-----VLTVDAKKVCDLTGKKRN 229
S T V + L + S + G +++ P+ R++ + + A+++C TGKK N
Sbjct: 19 SMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISLPSFPGIQPIVARRICPFTGKKAN 78
Query: 230 KANSVCFSNKKSRKWQEPNLQNKKVFWEEGQRWVKLRICTKAIKTLENKGIATMAAEAGI 409
+AN V FSN K++K Q NLQ K+V+WE G+R+VKLR+ TKA+KT+E G+ +A +AGI
Sbjct: 79 RANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGI 138
Query: 410 DLWK 421
DL K
Sbjct: 139 DLRK 142
>pir||F84745 probable chloroplast 50S ribosomal protein L28 [imported] -
Arabidopsis thaliana
Length = 140
Score = 95.1 bits (235), Expect = 5e-19
Identities = 51/124 (41%), Positives = 78/124 (62%), Gaps = 6/124 (4%)
Frame = +2
Query: 68 SFTAPKVAAMSLS-MRSSIVGQSLAFKPATAQVRVAR-----VLTVDAKKVCDLTGKKRN 229
S T V + L + S + G +++ P+ R++ + + A+++C TGKK N
Sbjct: 16 SMTKSTVTSKELGFLTSQLSGLRISYTPSDVINRISLPSFPGIQPIVARRICPFTGKKAN 75
Query: 230 KANSVCFSNKKSRKWQEPNLQNKKVFWEEGQRWVKLRICTKAIKTLENKGIATMAAEAGI 409
+AN V FSN K++K Q NLQ K+V+WE G+R+VKLR+ TKA+KT+E G+ +A +AGI
Sbjct: 76 RANKVSFSNHKTKKLQFVNLQYKRVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGI 135
Query: 410 DLWK 421
DL K
Sbjct: 136 DLRK 139
>sp|P30956|RK28_TOBAC 50S RIBOSOMAL PROTEIN L28, CHLOROPLAST PRECURSOR (CL28)
gi|279656|pir||R5NT28 ribosomal protein L28 precursor,
chloroplast - tobacco gi|20016|emb|CAA48211.1| ribosomal
protein CL28 [Nicotiana tabacum]
Length = 151
Score = 94.4 bits (233), Expect = 9e-19
Identities = 52/121 (42%), Positives = 75/121 (61%), Gaps = 3/121 (2%)
Frame = +2
Query: 68 SFTAPKVAAMSLSMR---SSIVGQSLAFKPATAQVRVARVLTVDAKKVCDLTGKKRNKAN 238
SF +++ + +S SS S+ FKP+ V A+++C TGKK N+AN
Sbjct: 39 SFVTSQLSGLKISSTHFISSSAPLSVPFKPSLQPV---------ARRICPFTGKKSNRAN 89
Query: 239 SVCFSNKKSRKWQEPNLQNKKVFWEEGQRWVKLRICTKAIKTLENKGIATMAAEAGIDLW 418
V SN K++K Q NLQ K+++WE G+R+VKLR+ TKAIKT+E G+ +A +AGIDL
Sbjct: 90 KVSHSNHKTKKLQFVNLQYKRIWWEAGKRYVKLRLSTKAIKTIEKNGLDAVAKKAGIDLS 149
Query: 419 K 421
K
Sbjct: 150 K 150
>ref|NP_683251.1| 50S ribosomal protein L28 [Thermosynechococcus elongatus BP-1]
gi|22296189|dbj|BAC10013.1| 50S ribosomal protein L28
[Thermosynechococcus elongatus BP-1]
Length = 104
Score = 94.0 bits (232), Expect = 1e-18
Identities = 43/76 (56%), Positives = 60/76 (78%)
Frame = +2
Query: 197 KVCDLTGKKRNKANSVCFSNKKSRKWQEPNLQNKKVFWEEGQRWVKLRICTKAIKTLENK 376
+VC LTGKK N A ++ S+++++K Q+ NLQ K+V+W EG+RWV+LR+ TKAIKTLE K
Sbjct: 29 RVCQLTGKKANNAYAISHSHRRTKKLQQVNLQWKRVWWPEGKRWVRLRLSTKAIKTLERK 88
Query: 377 GIATMAAEAGIDLWKL 424
G++ A EAG+DL KL
Sbjct: 89 GLSAFAKEAGLDLNKL 104
