KCC001708A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001708A_C01 KCC001708A_c01
gcatCCAGGCAAGCGCATCATCAGCTAAAATCTCTGCAAGAATCTATCAATTTCCATCCT
CGCAGGAGGCTGCCGTTGCGGCCTCCTATCTGAATAGACTCTACTATACATATTCCTGAC
TTCCAAGCTAACTAGAGAATGCCAAAGCGCACTACGCTAACGTTCACCAGCGAGGACGGG
CCCCGCGTTGACTCGGCAAAGCTTTATGTCTATCACTGCAAATATTCTGGACGCCATGCC
TTCACAATAGATGCTGACCTGAAAAAGATGCCACGGCGGCGAACGGACGGGGCTTACATC
GTGGACACGAACGAGCATACCATCAAGCTCTACACCACGGATGGTGGGCTCAAGTATATC
AAGCGCCAGAACGGTGCCATAGAGAAGCAGTACCGCCAGAACCTGGGCCAGCTGCCCATC
GCCTACAAGTCCGACCTGACCAGCCCGCTGCTCTACATCCTGGACAACGCCGTCACAACC
TTCTCCAACCAGAATGCGCGGAGAGCGGGCAAGCTGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001708A_C01 KCC001708A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_568972.2| expressed protein [Arabidopsis thaliana] gi|264...    89  4e-17
ref|NP_851256.1| expressed protein [Arabidopsis thaliana] gi|162...    89  4e-17
dbj|BAC84531.1| unknown protein [Oryza sativa (japonica cultivar...    88  8e-17
ref|XP_135837.1| RIKEN cDNA C330007P06 [Mus musculus]                  56  2e-07
dbj|BAB32323.1| unnamed protein product [Mus musculus]                 56  2e-07

>ref|NP_568972.2| expressed protein [Arabidopsis thaliana]
           gi|26452404|dbj|BAC43287.1| unknown protein [Arabidopsis
           thaliana]
          Length = 232

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 46/119 (38%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
 Frame = +1

Query: 139 MPKRTTLTFTSEDG-PRVDSAKLYVYHCKYSGRHAFTIDADLKKMPRRRTDGAYIVDTNE 315
           MPKRTT T++SED  P    + L+VY+CK+ G H    D  L+KMP+R+TD + ++D   
Sbjct: 1   MPKRTTHTYSSEDAAPDGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDRSNVLDKKT 60

Query: 316 HTIKLYTTDGGLKYIKRQNGAIEKQYRQN-LG-QLPIAYKSD---LTSPLLYILDNAVT 477
           H  +L  ++GG   +KR  G +E+Q+R N +G +L + Y+++    T+  +YI+D A++
Sbjct: 61  HLARLNVSEGGKVLLKRGEGKMERQFRMNCIGCELFVCYRAEENLETASFIYIVDGALS 119

>ref|NP_851256.1| expressed protein [Arabidopsis thaliana]
           gi|16226478|gb|AAL16178.1|AF428410_1 AT5g63440/MLE2_7
           [Arabidopsis thaliana] gi|22137224|gb|AAM91457.1|
           AT5g63440/MLE2_7 [Arabidopsis thaliana]
          Length = 205

 Score = 88.6 bits (218), Expect = 4e-17
 Identities = 46/119 (38%), Positives = 76/119 (63%), Gaps = 6/119 (5%)
 Frame = +1

Query: 139 MPKRTTLTFTSEDG-PRVDSAKLYVYHCKYSGRHAFTIDADLKKMPRRRTDGAYIVDTNE 315
           MPKRTT T++SED  P    + L+VY+CK+ G H    D  L+KMP+R+TD + ++D   
Sbjct: 1   MPKRTTHTYSSEDAAPDGPDSDLFVYYCKHCGSHVLITDTQLQKMPKRKTDRSNVLDKKT 60

Query: 316 HTIKLYTTDGGLKYIKRQNGAIEKQYRQN-LG-QLPIAYKSD---LTSPLLYILDNAVT 477
           H  +L  ++GG   +KR  G +E+Q+R N +G +L + Y+++    T+  +YI+D A++
Sbjct: 61  HLARLNVSEGGKVLLKRGEGKMERQFRMNCIGCELFVCYRAEENLETASFIYIVDGALS 119

>dbj|BAC84531.1| unknown protein [Oryza sativa (japonica cultivar-group)]
          Length = 232

 Score = 87.8 bits (216), Expect = 8e-17
 Identities = 46/120 (38%), Positives = 75/120 (62%), Gaps = 6/120 (5%)
 Frame = +1

Query: 139 MPKRTTLTFTSEDG-PRVDSAKLYVYHCKYSGRHAFTIDADLKKMPRRRTDGAYIVDTNE 315
           MPKRTT T++SED  P    + L+VY+CK+   H    D  L+KMP+R+TD A+++D  +
Sbjct: 1   MPKRTTHTYSSEDALPEGPESDLFVYYCKHCASHVLITDTQLQKMPKRKTDRAHVLDKKK 60

Query: 316 HTIKLYTTDGGLKYIKRQNGAIEKQYRQN-LG-QLPIAYKSD---LTSPLLYILDNAVTT 480
           H  +L   + G   +KR  G +EKQ+R + LG  L + Y+S+     +P +Y++D A+++
Sbjct: 61  HLSRLNVKEAGKVLLKRGEGKLEKQFRMSCLGCGLFVCYRSEEELELAPFIYVVDGALSS 120

>ref|XP_135837.1| RIKEN cDNA C330007P06 [Mus musculus]
          Length = 250

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
 Frame = +1

Query: 139 MPK---RTTLTFTSEDGPRVDSAK--LYVYHCKYSGRHAFTIDADLKKMPRRRTDGAYIV 303
           MPK   R+ +   + D    D  +  L+VY+C   G+    +D  L+K+P R  D + ++
Sbjct: 1   MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYC-LCGQMVLVLDCQLEKLPMRPRDRSRVI 59

Query: 304 DTNEHTIKLYTT-DGGLKYIKRQNGAIEKQYRQNLGQ--LPIAYKSD-LTSPLLYILDNA 471
           D  +H  K   T D    Y++R  G IE+QYR+   +  LP+ Y+S    +P+ +I+D A
Sbjct: 60  DAAKHAHKFCNTEDEETTYLRRPEG-IERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGA 118

Query: 472 VTTF 483
           V  F
Sbjct: 119 VVKF 122

>dbj|BAB32323.1| unnamed protein product [Mus musculus]
          Length = 250

 Score = 56.2 bits (134), Expect = 2e-07
 Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 9/124 (7%)
 Frame = +1

Query: 139 MPK---RTTLTFTSEDGPRVDSAK--LYVYHCKYSGRHAFTIDADLKKMPRRRTDGAYIV 303
           MPK   R+ +   + D    D  +  L+VY+C   G+    +D  L+K+P R  D + ++
Sbjct: 1   MPKVVSRSVVCSDTRDREEYDDGEKPLHVYYC-LCGQMVLVLDCQLEKLPMRPRDRSRVI 59

Query: 304 DTNEHTIKLYTT-DGGLKYIKRQNGAIEKQYRQNLGQ--LPIAYKSD-LTSPLLYILDNA 471
           D  +H  K   T D    Y++R  G IE+QYR+   +  LP+ Y+S    +P+ +I+D A
Sbjct: 60  DAAKHAHKFCNTEDEETTYLRRPEG-IERQYRKKCAKCGLPLFYQSQPKNAPVTFIVDGA 118

Query: 472 VTTF 483
           V  F
Sbjct: 119 VVKF 122



EST assemble image


clone accession position
1 LC031g01_r AV621136 1 419
2 CM083f09_r AV392184 22 539




Chlamydomonas reinhardtii
Kazusa DNA Research Institute