KCC001702A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001702A_C01 KCC001702A_c01
acggcatgaatacagacacgaggcggggtatttaatcccttggacatatcttaggTTTGT
CCGTCGGGGGGTCGGTCGTCCCCTCAAGGGGGGTCCCGGGGGATTTCGGGGCATGGGGTC
TGGCACTTAGTTTCCTACCCCCCCCCCTAGGCTCCAGCATCCTATCCTAGCTAGGCTGCC
ACGCATGGCATTAGCCGGCTTGCGCGAACCCGCACATAGTCAGCACTAGCGCACGGCAGC
CGCATAGGCGCTAGCCAAGGTCCCACCACCTCCCATCCGCAATTAATATCATGAAAGCCG
TTCACCTATCAATCTCATACCGCTCATCCATAACACTAGGCCTATCCTACGTCTACAAGC
CCTCTCAGTCTGCCAACAAAACACACACATACAAGTCTAACCCCACCCTCCAACGCTCTC
AGCTCGCTCCGCTCCTGCTCACAGCCACATCGCGCACATGGCATCCACAAAGCACCTCAG
GCTCCGCACGCCCCCCACCCGCGGGCGCTGCGTGGTCGCCTCCCGACACCGGAACAACGC
ACGAACACTACAGCAACACAACGCCCCATCGCGCGCCACCACCGGACCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001702A_C01 KCC001702A_c01
         (590 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_210362.1| similar to hydroxyproline-rich glycoprotein DZ-...    42  0.008
dbj|BAC35150.1| unnamed protein product [Mus musculus]                 41  0.011
ref|XP_139295.2| similar to caspase recruitment domain family, m...    41  0.011
ref|XP_352404.1| similar to contains similarity to cell wall-pla...    41  0.014
ref|XP_293223.2| similar to contains similarity to cell wall-pla...    41  0.014

>ref|XP_210362.1| similar to hydroxyproline-rich glycoprotein DZ-HRGP [Homo sapiens]
          Length = 392

 Score = 41.6 bits (96), Expect = 0.008
 Identities = 46/144 (31%), Positives = 58/144 (39%), Gaps = 7/144 (4%)
 Frame = +3

Query: 180 HAWH*PACANPHIVSTSARQPHRR*PRSHHLPSAI-NIMKAVHLSISYRSSITLGLSYVY 356
           H+W    C+ PH  + S  + H + P  H  P      M  V L  S+ + +    S+ +
Sbjct: 202 HSW---PCSPPHTPTKS--RTHAQDPSPHLTPQPRPGPMLTVPLPTSHPNQVQDPCSWPH 256

Query: 357 KPSQSANK--THTYKSNPTLQ-RSQLAPLLLTATSRTWHPQSTSGSARPPPAGAAWSPPD 527
            P  +  K  THT+ S P L  R    P L T    T HP     S    P     SPP 
Sbjct: 257 SPPHTPAKPRTHTHGSAPHLTPRPSPGPTLRTPLP-TSHP-----SQAQDPHSRFRSPPQ 310

Query: 528 TGT---THEHYSNTTPHRAPPPDP 590
           T T   TH H    TPH  P P P
Sbjct: 311 TPTKPRTHAH--GPTPHLTPRPSP 332

>dbj|BAC35150.1| unnamed protein product [Mus musculus]
          Length = 1157

 Score = 41.2 bits (95), Expect = 0.011
 Identities = 35/117 (29%), Positives = 48/117 (40%), Gaps = 5/117 (4%)
 Frame = +1

Query: 247  GASQGPTTSHPQLIS*KPFTYQ--SHTAHP*H*AYPTSTSPLSLPTKHTHTSLTPPSNAL 420
            G     T +H Q    KP   Q  SH  HP H A P+  +P      H  +S   PS+  
Sbjct: 965  GQPSQATPTHSQASQAKPTHSQANSHHPHPSH-AKPSHQNPSHANPTHPQSSHAKPSHPQ 1023

Query: 421  SSLRSCSQPHRAHGIHKAPQAPHA--PHPRALRGRLPTPE-QRTNTTATQRPIARHH 582
            SS    S P  +H     PQ+ HA   HP++ + +   P+  +   T  Q   A  H
Sbjct: 1024 SSHAKPSHPQSSHAKPSHPQSSHAKPSHPQSSQAKPSHPQSSQAKPTHPQSSQANSH 1080

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 31/107 (28%), Positives = 37/107 (33%), Gaps = 18/107 (16%)
 Frame = +1

Query: 271  SHPQLIS*KPFTYQSHTAHP*H*----AYPTSTSPLSLPTKHTHTSLTPPSNALSSLRSC 438
            SHPQ    KP   QS  A P H     A PT        + H   S   PS+  SS    
Sbjct: 1040 SHPQSSHAKPSHPQSSQAKPSHPQSSQAKPTHPQSSQANSHHPQASQAKPSHPQSSHAKP 1099

Query: 439  SQPH--------------RAHGIHKAPQAPHAPHPRALRGRLPTPEQ 537
            S PH              +AH  H++   P  P P   +     P Q
Sbjct: 1100 SHPHPSHAKPSPSQSTQCKAHKAHQSQPKPFQPRPTQPKSSKTKPSQ 1146

>ref|XP_139295.2| similar to caspase recruitment domain family, member 6; caspase
            recruitment domain protein 6 [Homo sapiens] [Mus
            musculus]
          Length = 1175

 Score = 41.2 bits (95), Expect = 0.011
 Identities = 35/117 (29%), Positives = 48/117 (40%), Gaps = 5/117 (4%)
 Frame = +1

Query: 247  GASQGPTTSHPQLIS*KPFTYQ--SHTAHP*H*AYPTSTSPLSLPTKHTHTSLTPPSNAL 420
            G     T +H Q    KP   Q  SH  HP H A P+  +P      H  +S   PS+  
Sbjct: 983  GQPSQATPTHSQASQAKPTHSQANSHHPHPSH-AKPSHQNPSHANPTHPQSSHAKPSHPQ 1041

Query: 421  SSLRSCSQPHRAHGIHKAPQAPHA--PHPRALRGRLPTPE-QRTNTTATQRPIARHH 582
            SS    S P  +H     PQ+ HA   HP++ + +   P+  +   T  Q   A  H
Sbjct: 1042 SSHAKPSHPQSSHAKPSHPQSSHAKPSHPQSSQAKPSHPQSSQAKPTHPQSSQANSH 1098

 Score = 35.8 bits (81), Expect = 0.46
 Identities = 31/107 (28%), Positives = 37/107 (33%), Gaps = 18/107 (16%)
 Frame = +1

Query: 271  SHPQLIS*KPFTYQSHTAHP*H*----AYPTSTSPLSLPTKHTHTSLTPPSNALSSLRSC 438
            SHPQ    KP   QS  A P H     A PT        + H   S   PS+  SS    
Sbjct: 1058 SHPQSSHAKPSHPQSSQAKPSHPQSSQAKPTHPQSSQANSHHPQASQAKPSHPQSSHAKP 1117

Query: 439  SQPH--------------RAHGIHKAPQAPHAPHPRALRGRLPTPEQ 537
            S PH              +AH  H++   P  P P   +     P Q
Sbjct: 1118 SHPHPSHAKPSPSQSTQCKAHKAHQSQPKPFQPRPTQPKSSKTKPSQ 1164

>ref|XP_352404.1| similar to contains similarity to cell wall-plasma membrane linker
           protein~gene_id:MKA23.5 [Homo sapiens]
          Length = 1000

 Score = 40.8 bits (94), Expect = 0.014
 Identities = 28/80 (35%), Positives = 34/80 (42%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLP 525
           PT+ SP        H+ LT P+       S  +P R HG+H    AP AP PR  R   P
Sbjct: 114 PTAPSPRPQHLHRPHSVLTAPT------ASSPRPQRPHGVHSLLIAPTAPSPRPQRPHRP 167

Query: 526 TPEQRTNTTATQRPIARHHR 585
                  +TA   P  R HR
Sbjct: 168 -HSALIGSTAPSPPRERPHR 186

 Score = 39.3 bits (90), Expect = 0.041
 Identities = 27/79 (34%), Positives = 34/79 (42%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLP 525
           PT++S         H+ LT P+       S  +P R H +H    AP AP PR  R   P
Sbjct: 512 PTASSRRPQRPHRVHSVLTAPT------ASSQRPQRPHRVHSVLTAPTAPSPRPQRPHRP 565

Query: 526 TPEQRTNTTATQRPIARHH 582
                T  TA+ RP  R H
Sbjct: 566 -DSVLTAPTASSRPRQRPH 583

 Score = 38.5 bits (88), Expect = 0.070
 Identities = 28/79 (35%), Positives = 34/79 (42%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLP 525
           PT++SP   P +  H    P S   +   S   P R HG+H    AP AP PR  R   P
Sbjct: 372 PTASSP---PPQRPHR---PDSVLTAPTASSPPPQRPHGVHSVLTAPTAPSPRPQRPHRP 425

Query: 526 TPEQRTNTTATQRPIARHH 582
                T  TA+  P  R H
Sbjct: 426 -HSVLTAPTASSPPPQRPH 443

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAH---GIHKAPQAPHAPHPRALRG 516
           PT++SP         + LT P+ + S  +   +P R H    +H     P AP PR  R 
Sbjct: 592 PTASSPRPQRPHRPDSVLTAPTASSSPPQRPQRPQRPHCPDSVHSVLTVPTAPSPRPQRP 651

Query: 517 RLPTPEQRTNTTATQRPIARHHR 585
             P      +T ++ RP  R HR
Sbjct: 652 HRPDSSLAASTASSPRP-QRPHR 673

 Score = 32.7 bits (73), Expect = 3.9
 Identities = 32/97 (32%), Positives = 41/97 (41%), Gaps = 17/97 (17%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPR------- 504
           PT++SP        H+ LT  S A S    C  PHR H +  AP AP +P P+       
Sbjct: 432 PTASSPPPQRPHGVHSVLTA-STASSPSPQC--PHRVHSVLTAPTAP-SPRPQRPHRVHS 487

Query: 505 ---ALRGRLPTPEQ-------RTNTTATQRPIARHHR 585
              AL    P P++        T  TA+ R   R HR
Sbjct: 488 VLTALTAPSPRPQRPHRVHSVLTVPTASSRRPQRPHR 524

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 21/77 (27%), Positives = 31/77 (39%)
 Frame = +1

Query: 349 TSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLPT 528
           T++SP        H+ LT P+ +    +   +P R H  H    AP A  P   R   P 
Sbjct: 215 TASSPPRQCPHGVHSVLTVPTVSSPRPQRPQRPQRPHRPHSVLTAPTASSPPRQRPHRPD 274

Query: 529 PEQRTNTTATQRPIARH 579
                +T ++  P  RH
Sbjct: 275 SVLTASTASSPSPQCRH 291

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHK----------APQAPHAP 495
           PT+ SP        H+ LT P+       S   P R HG+H           +PQ PH  
Sbjct: 412 PTAPSPRPQRPHRPHSVLTAPT------ASSPPPQRPHGVHSVLTASTASSPSPQCPHRV 465

Query: 496 HPRALRGRLPTP 531
           H        P+P
Sbjct: 466 HSVLTAPTAPSP 477

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +1

Query: 349 TSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLPT 528
           T++SP        H+ L   S   +   S  +P R H +H A  AP A  P   R   P 
Sbjct: 281 TASSPSPQCRHRVHSVLNVRSVLTAPTASSPRPQRPHRVHSALTAPTASSPPPQRPHHPD 340

Query: 529 PEQRTNTTATQRPIARH 579
                +T ++  P   H
Sbjct: 341 SVLTASTASSLSPQCPH 357

>ref|XP_293223.2| similar to contains similarity to cell wall-plasma membrane linker
           protein~gene_id:MKA23.5 [Homo sapiens]
          Length = 1026

 Score = 40.8 bits (94), Expect = 0.014
 Identities = 28/80 (35%), Positives = 34/80 (42%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLP 525
           PT+ SP        H+ LT P+       S  +P R HG+H    AP AP PR  R   P
Sbjct: 196 PTAPSPRPQHLHRPHSVLTAPT------ASSPRPQRPHGVHSLLIAPTAPSPRPQRPHRP 249

Query: 526 TPEQRTNTTATQRPIARHHR 585
                  +TA   P  R HR
Sbjct: 250 -HSALIGSTAPSPPRERPHR 268

 Score = 38.5 bits (88), Expect = 0.070
 Identities = 28/79 (35%), Positives = 34/79 (42%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLP 525
           PT++SP   P +  H    P S   +   S   P R HG+H    AP AP PR  R   P
Sbjct: 454 PTASSP---PPQRPHR---PDSVLTAPTASSPPPQRPHGVHSVLTAPTAPSPRPQRPHRP 507

Query: 526 TPEQRTNTTATQRPIARHH 582
                T  TA+  P  R H
Sbjct: 508 -HSVLTAPTASSPPPQRPH 525

 Score = 33.5 bits (75), Expect = 2.3
 Identities = 36/119 (30%), Positives = 50/119 (41%), Gaps = 11/119 (9%)
 Frame = +1

Query: 256 QGPTTSHPQLIS*KPFTYQSHTAHP*H*AY--PTSTSPLSLPTKHTHTSLTPPSNALSSL 429
           Q P + H  LI+    +      H  H A   PT++SP         + LT P+   +S 
Sbjct: 612 QRPHSVHSVLIASTASSPPPQRPHRVHSALTVPTASSPPRQRPHGPDSVLTVPT---ASS 668

Query: 430 RSCSQPHRAHGIHKAP-------QAPHAPHP-RALRGRLPTPEQRT-NTTATQRPIARH 579
            S  +PHR H +  AP       Q PH PH    +R  L  P   T ++ + QRP   H
Sbjct: 669 PSPQRPHRVHSVLTAPTASSPPRQRPHRPHSVLNVRSVLTAPTASTASSPSPQRPHRVH 727

 Score = 32.7 bits (73), Expect = 3.9
 Identities = 20/59 (33%), Positives = 30/59 (49%), Gaps = 6/59 (10%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSL------TPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPR 504
           PT++SP        H+ L      T P+ + +S  S  +PHR H +  AP AP +P P+
Sbjct: 684 PTASSPPRQRPHRPHSVLNVRSVLTAPTASTASSPSPQRPHRVHSVLTAPTAP-SPRPQ 741

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 21/77 (27%), Positives = 31/77 (39%)
 Frame = +1

Query: 349 TSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLPT 528
           T++SP        H+ LT P+ +    +   +P R H  H    AP A  P   R   P 
Sbjct: 297 TASSPPRQCPHGVHSVLTVPTVSSPRPQRPQRPQRPHRPHSVLTAPTASSPPRQRPHRPD 356

Query: 529 PEQRTNTTATQRPIARH 579
                +T ++  P  RH
Sbjct: 357 SVLTASTASSPSPQCRH 373

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 21/77 (27%), Positives = 30/77 (38%)
 Frame = +1

Query: 349 TSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHKAPQAPHAPHPRALRGRLPT 528
           T++SP        H+ L   S   +   S  +P R H +H A  AP A  P   R   P 
Sbjct: 363 TASSPSPQCRHRVHSVLNVRSVLTAPTASSPRPQRPHRVHSALTAPTASSPPPQRPHHPD 422

Query: 529 PEQRTNTTATQRPIARH 579
                +T ++  P   H
Sbjct: 423 SVLTASTASSLSPQCPH 439

 Score = 32.0 bits (71), Expect = 6.6
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 10/72 (13%)
 Frame = +1

Query: 346 PTSTSPLSLPTKHTHTSLTPPSNALSSLRSCSQPHRAHGIHK----------APQAPHAP 495
           PT+ SP        H+ LT P+       S   P R HG+H           +PQ PH  
Sbjct: 494 PTAPSPRPQRPHRPHSVLTAPT------ASSPPPQRPHGVHSVLTASTASSPSPQCPHRV 547

Query: 496 HPRALRGRLPTP 531
           H        P+P
Sbjct: 548 HSVLTAPTAPSP 559



EST assemble image


clone accession position
1 CM082f04_r AV392151 1 522
2 CM082h08_r AV392124 20 591




Chlamydomonas reinhardtii
Kazusa DNA Research Institute