KCC001701A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001701A_C01 KCC001701A_c01
acgcttgcaaaAAACCGCTGGCCCACCTGACTCTGCGACTGCCTTGAATTAGTGTGGGCA
AATGTTGAGTGCACTCCCATCCACGCGAGTGGCCGCGACGCGCAGCGCTGCCGCGTGCAG
GTCACGGTTGCAGCTGCCAGCACGTTGCAAGCATGCAGTTCGCCGGGCGCAGCGCAGTTC
GCAGGCGGAGATCGCGGAGCTGGAGTGCAGCACGTCCTCTCGCAGCTGCGAGACAGTCGC
CACCGTTCCCCTCGCCGCCCTGCTGGCAGTTGCAGCCTGCGGCAACCTCCTAGCACCAGG
AGCAGCGGAGGCGCTCACCATTCACGCGGAGCCAGCGAATGCGCTGAGCTTGCCCACGTG
GGCCATCCACGTGTCGTCGGTGGTGGAGTGGGTCACTGCCATGGGGCTCATGTGGAAGTA
TGCGGAGGCGACCAACAACCCCCGCTGGAAGGGCATGGCGTGGGGCATGGTTCCCAGCCT
GGGGTCAGCGATGGCCGCGTGCACGTGGCACTTCTTCTACAACAGCCCAGACCTGGAGTT
TCTCGTGGTGGTGCAGTCGGCGCTGACGGTGATCGGCAACTGCACCTGCTGGTGGGCCGC
ATACCGCATCTACGAGGCGGCGCAGGCGGAGAAGAGCTCAGCCTGATGGGCGGCTTGGAG
TGGGTGGCTGATATCATTCGTTGATGACACTGGACATGGGGGTTTGTACGATAATGACGG
TGCAGGTTTGGGCAGGTGCAGATGCAGGTTTGGGCCTTGTCTCGACGCTGCCTCCTTCCA
ATCCCAGCCCGTGTTCACAATCCAACGCACAACCCAGTGCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001701A_C01 KCC001701A_c01
         (822 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE03987.1| OSJNBb0089B03.1 [Oryza sativa (japonica cultivar...   154  2e-36
ref|NP_194014.2| expressed protein [Arabidopsis thaliana] gi|264...   142  9e-33
ref|NP_488548.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2...   114  3e-24
ref|NP_442291.1| hypothetical protein [Synechocystis sp. PCC 680...   112  7e-24
ref|NP_924822.1| hypothetical protein glr1876 [Gloeobacter viola...   112  1e-23

>emb|CAE03987.1| OSJNBb0089B03.1 [Oryza sativa (japonica cultivar-group)]
           gi|32492423|emb|CAE05700.1| OSJNBa0083D01.22 [Oryza
           sativa (japonica cultivar-group)]
          Length = 363

 Score =  154 bits (388), Expect = 2e-36
 Identities = 76/123 (61%), Positives = 87/123 (69%)
 Frame = +2

Query: 257 ALLAVAACGNLLAPGAAEALTIHAEPANALSLPTWAIHVSSVVEWVTAMGLMWKYAEATN 436
           A + VAA      P  A    + AEPANALSLPTWA+HVSSV EWVTAM L+W Y E T 
Sbjct: 38  AFVTVAAVAAASPPAIA---ALAAEPANALSLPTWAVHVSSVAEWVTAMALVWDYGERTG 94

Query: 437 NPRWKGMAWGMVPSLGSAMAACTWHFFYNSPDLEFLVVVQSALTVIGNCTCWWAAYRIYE 616
              WKG++WGMVP LG AM ACTWHFFYNS  LE LV +Q ALTVIGN T   AA+RI++
Sbjct: 95  LKGWKGLSWGMVPLLGGAMCACTWHFFYNSESLEVLVALQGALTVIGNITMCIAAFRIFK 154

Query: 617 AAQ 625
           A+Q
Sbjct: 155 ASQ 157

>ref|NP_194014.2| expressed protein [Arabidopsis thaliana]
           gi|26452656|dbj|BAC43411.1| unknown protein [Arabidopsis
           thaliana] gi|28973427|gb|AAO64038.1| unknown protein
           [Arabidopsis thaliana]
          Length = 193

 Score =  142 bits (357), Expect = 9e-33
 Identities = 63/95 (66%), Positives = 74/95 (77%)
 Frame = +2

Query: 326 AEPANALSLPTWAIHVSSVVEWVTAMGLMWKYAEATNNPRWKGMAWGMVPSLGSAMAACT 505
           +EP+NALSLPTWA+HVSSVVEW+TAM L+WKY E      WKG++WGMVP LG A+ ACT
Sbjct: 86  SEPSNALSLPTWAVHVSSVVEWITAMALVWKYGERKGYESWKGLSWGMVPLLGGALCACT 145

Query: 506 WHFFYNSPDLEFLVVVQSALTVIGNCTCWWAAYRI 610
           WHFFYN   LE LV +Q+ALTV GN T   AA+RI
Sbjct: 146 WHFFYNDESLEVLVALQAALTVFGNITLCIAAFRI 180

>ref|NP_488548.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25354814|pir||AD2369
           hypothetical protein all4508 [imported] - Nostoc sp.
           (strain PCC 7120) gi|17133644|dbj|BAB76207.1|
           ORF_ID:all4508~hypothetical protein [Nostoc sp. PCC
           7120]
          Length = 102

 Score =  114 bits (284), Expect = 3e-24
 Identities = 50/98 (51%), Positives = 71/98 (72%)
 Frame = +2

Query: 338 NALSLPTWAIHVSSVVEWVTAMGLMWKYAEATNNPRWKGMAWGMVPSLGSAMAACTWHFF 517
           N LS+PTW IHVSSV+EW+ A+ L+W Y E T N  W G++  M+P+L SAM ACTWH+F
Sbjct: 2   NVLSIPTWIIHVSSVIEWIAAIWLIWTYGELTANRSWWGLSLAMLPALISAMCACTWHYF 61

Query: 518 YNSPDLEFLVVVQSALTVIGNCTCWWAAYRIYEAAQAE 631
            NS  LE++V +Q+ +T++GN T   AA+ I+ +A+ E
Sbjct: 62  DNSESLEWIVTLQATMTLVGNFTLLAAAWLIWRSAKIE 99

>ref|NP_442291.1| hypothetical protein [Synechocystis sp. PCC 6803]
           gi|6136533|sp|Q55720|Y49L_SYNY3 Ycf49-like protein
           gi|7469614|pir||S76515 hypothetical protein -
           Synechocystis sp. (strain PCC 6803)
           gi|1001630|dbj|BAA10361.1| ORF_ID:sll0608~hypothetical
           protein [Synechocystis sp. PCC 6803]
          Length = 104

 Score =  112 bits (280), Expect = 7e-24
 Identities = 50/92 (54%), Positives = 66/92 (71%)
 Frame = +2

Query: 338 NALSLPTWAIHVSSVVEWVTAMGLMWKYAEATNNPRWKGMAWGMVPSLGSAMAACTWHFF 517
           NALS+PTW +HVSSV+EW+ A+ L+ +YA       W+ +AWGMVP+L SA  ACTWHFF
Sbjct: 2   NALSIPTWMVHVSSVIEWIVAIALVSRYATKAGYGHWRALAWGMVPALVSATCACTWHFF 61

Query: 518 YNSPDLEFLVVVQSALTVIGNCTCWWAAYRIY 613
            N+  L++LV +Q+  TVIGN T   AA+ IY
Sbjct: 62  DNASQLDWLVTLQALTTVIGNITLCLAAWWIY 93

>ref|NP_924822.1| hypothetical protein glr1876 [Gloeobacter violaceus]
           gi|35212442|dbj|BAC89817.1| glr1876 [Gloeobacter
           violaceus]
          Length = 104

 Score =  112 bits (279), Expect = 1e-23
 Identities = 48/95 (50%), Positives = 69/95 (72%)
 Frame = +2

Query: 341 ALSLPTWAIHVSSVVEWVTAMGLMWKYAEATNNPRWKGMAWGMVPSLGSAMAACTWHFFY 520
           ALSLPTW IH++SVVEW  A+ L+W+YAE T    ++ + WGM+P+L  AMA   WH+F 
Sbjct: 3   ALSLPTWIIHIASVVEWTLAIALVWRYAERTGERSFRALCWGMLPALVGAMAVLVWHYFD 62

Query: 521 NSPDLEFLVVVQSALTVIGNCTCWWAAYRIYEAAQ 625
           N P+L +L  +Q+A+T++GN T  +AAY IY +A+
Sbjct: 63  NRPELAYLGQLQAAMTLLGNATLAFAAYLIYRSAR 97



EST assemble image


clone accession position
1 LC083d04_r AV624833 1 505
2 CM082e03_r AV392079 12 557
3 MX232g01_r BP091030 263 814
4 MX232h12_r BP091045 370 758
5 HC044a11_r AV635262 370 822




Chlamydomonas reinhardtii
Kazusa DNA Research Institute