KCC001697A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001697A_C01 KCC001697A_c01
gcaccaggagagagctgcatcgtccatgaaagtgcgtgtggtgttagtcggtccgtttag
gttcatgggatgcctttcgaGACGTGACGCGGTGTATGGATTTCTCTCAACCTGAGGAGC
TGATGCGGAGCTGTGCGGCGTCCGTCGTGCATGTACAGAGATAAGAACGGCGAACAAACA
TAAGCTCTAGTGTCCAGACCGAGGTGAGAGACCGAGGTGGGTTTTATTTGCGCTGTGGAG
TGCGATTGTGTTGTTGGCCGCGGGATGGTGGGCACATGCGCAACTCGCCATCCGTCGCCA
CGGGTACACACCACGCGGTTTATCGGTGTTGATCAGTGTGTGGATATTGGCAGGAAGTTA
AGTGTATGTCCGCTCGCCGGCATTTATGGCCCAGGTGTAGTTTGTGCATTGGTTGCCGTG
ACAAGCGTGTCGGCATTAGGAGGGCTGCTGTGCGCGTGGCGCGTTTGTGCGCCTAGTGCC
CTGAATTCAGTATGAGTCTCAAGTGGCGGTGGCAGGCGCAGCCTGGCATCCAGGAACAAC
AACAGTACGGTAAGAAACTTTGCGATGGTGATGATTCGCACTCTATGACCCGTACCATGA
TATTCTTGTTGCGTTAAGTTGGGCAGATGTTGGAAGGAACTTCCGACCTTGCCAGGTGCA
CGTGCAGGTTGCTGTGtgaagagaaccttcggcaatatgactgcaatatgtgataaggcg
accgcaccgtgcaagacatttgtaaaccattgttgt


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001697A_C01 KCC001697A_c01
         (756 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_065319.1| similar to salivary gland secretion protein 4 [...    40  0.052
gb|AAH30451.1| Similar to hypothetical protein FLJ13725 [Mus mus...    34  2.2
dbj|BAC65855.1| mKIAA1930 protein [Mus musculus]                       34  2.2
pir||B46629 mucin 6, gastric (3-repeat clone) - human (fragment)...    34  2.8
ref|NP_747406.1| epimerase/dehydratase-related protein [Pseudomo...    30  4.5

>ref|XP_065319.1| similar to salivary gland secretion protein 4 [Homo sapiens]
          Length = 207

 Score = 39.7 bits (91), Expect = 0.052
 Identities = 41/171 (23%), Positives = 69/171 (39%), Gaps = 9/171 (5%)
 Frame = -3

Query: 712 HILQSYCRRFSS-----HSNLHVHL--ARSEVPSNICPT*RNKNIMVRVIECESSPSQSF 554
           H+L S CR   +     H++ H+ +   R ++ +  CP   N  + +    C  + + + 
Sbjct: 49  HMLMSTCRYPCAECRCPHADTHMQMPTCRMKISTCSCPY-ANAYMQIPTCRCPHTDTYTQ 107

Query: 553 LPYCCCSWMPGCACHRHLRLILNSGH*AHKRATRTAALLMPTRLSRQPMHKLHLGHKCRR 374
           +P C           R+L    +     ++     A + +PT   R P    H  ++C  
Sbjct: 108 MPTC-----------RYLHADTDVQMPTYRHLHTDANMQIPT--CRYP----HAEYRCPH 150

Query: 373 ADIH--LTSCQYPHTDQHR*TAWCVPVATDGELRMCPPSRGQQHNRTPQRK 227
           AD H  + +C+YPH D H     C     D   +M PP R   H  T  +K
Sbjct: 151 ADAHTRIPTCRYPHADTHMQIPTCRYTLADAHTQM-PPYR-NLHTETYTQK 199

>gb|AAH30451.1| Similar to hypothetical protein FLJ13725 [Mus musculus]
          Length = 862

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
 Frame = -2

Query: 506 PLETHTEFRALGAQTRHAHSSPPNADTLVTATNAQTTPGP*MPASGHTLNF----LPIST 339
           P  THT  R         HSSP    T  + T+   +P    P+SGH+         +ST
Sbjct: 242 PSPTHTTIRLTHTTVSPTHSSPSPIHTTPSPTHTTVSPTCTTPSSGHSTTSPTQEAKMST 301

Query: 338 H*STPINRVVCTRGDGWRVAHVPTIPRPTTQSHS----TAQIKPTSVSHLGLDTRAYVCS 171
           H +  +  V  T           T P  TT+S S     A I  +S    G  T    CS
Sbjct: 302 HTTGAVGPVQTT-----------TSPISTTESPSPSTDVAIISSSSAESTGPGTEPLPCS 350

>dbj|BAC65855.1| mKIAA1930 protein [Mus musculus]
          Length = 1262

 Score = 34.3 bits (77), Expect = 2.2
 Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
 Frame = -2

Query: 506 PLETHTEFRALGAQTRHAHSSPPNADTLVTATNAQTTPGP*MPASGHTLNF----LPIST 339
           P  THT  R         HSSP    T  + T+   +P    P+SGH+         +ST
Sbjct: 642 PSPTHTTIRLTHTTVSPTHSSPSPIHTTPSPTHTTVSPTCTTPSSGHSTTSPTQEAKMST 701

Query: 338 H*STPINRVVCTRGDGWRVAHVPTIPRPTTQSHS----TAQIKPTSVSHLGLDTRAYVCS 171
           H +  +  V  T           T P  TT+S S     A I  +S    G  T    CS
Sbjct: 702 HTTGAVGPVQTT-----------TSPISTTESPSPSTDVAIISSSSAESTGPGTEPLPCS 750

>pir||B46629 mucin 6, gastric (3-repeat clone) - human (fragment)
           gi|292046|gb|AAB61945.1| mucin
          Length = 505

 Score = 33.9 bits (76), Expect = 2.8
 Identities = 38/128 (29%), Positives = 55/128 (42%), Gaps = 8/128 (6%)
 Frame = -2

Query: 518 RLPPPLETHTEFRALGAQTRHAHSSPPNADTLVTATNAQTT---PGP*MPASGHTLNFLP 348
           R PPP  TH+             SSP ++   +TAT+ +TT   P P +P +    +  P
Sbjct: 118 RPPPPFTTHSP---------PTGSSPFSSTGPMTATSFKTTTTYPTPSLPQTTPLTHVPP 168

Query: 347 ISTH*STPINRVVCTRGDGWRVAHVPTIPRPTTQS--HSTAQ---IKPTSVSHLGLDTRA 183
            ST   TPI   V T          PT P+ +T +  HST       PT+V      TR+
Sbjct: 169 FSTSLVTPITHTVIT----------PTHPQMSTSAYIHSTPTGTIASPTTVK----ATRS 214

Query: 182 YVCSPFLS 159
              +P ++
Sbjct: 215 TYTAPLMT 222

>ref|NP_747406.1| epimerase/dehydratase-related protein [Pseudomonas putida KT2440]
           gi|24987112|gb|AAN70870.1|AE016731_5
           epimerase/dehydratase-related protein [Pseudomonas
           putida KT2440]
          Length = 285

 Score = 29.6 bits (65), Expect(2) = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +2

Query: 197 DRGERPRWVLFALWSAIVLLAAGWWAHAQLAIRRHGYTPR 316
           +RG+RPR +LF   S++     G W     A    GY+ R
Sbjct: 98  ERGQRPRRLLFVSSSSVYAQKGGEWIEEGAATEPEGYSGR 137

 Score = 22.3 bits (46), Expect(2) = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +1

Query: 349 GRKLSVCPLAGIYGPG 396
           G   SV  L GIYGPG
Sbjct: 150 GIPASVVRLTGIYGPG 165



EST assemble image


clone accession position
1 CM082c11_r AV392127 1 511
2 LC058g06_r AV623088 270 757




Chlamydomonas reinhardtii
Kazusa DNA Research Institute