Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001682A_C01 KCC001682A_c01
(697 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD38614.1| hypothetical protein [Homo sapiens] 45 0.001
gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest... 42 0.012
pir||S27921 nuclear antigen EBNA-3B - human herpesvirus 4 gi|330... 40 0.045
emb|CAC87274.1| LppS protein [Mycoplasma conjunctivae] 40 0.045
ref|ZP_00140173.1| hypothetical protein [Pseudomonas aeruginosa ... 40 0.045
>emb|CAD38614.1| hypothetical protein [Homo sapiens]
Length = 287
Score = 45.1 bits (105), Expect = 0.001
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Frame = -1
Query: 586 PCAQPAEM*FSASSLPHAPSNPSLYTRRSHALSYLPLM-PHASMSNDRTTPTTERTAWV- 413
PC PA++ A+ H ++P+ ++R L+ P PH+ ++ T T +T
Sbjct: 16 PCHAPAQLPSLAALQTHPQAHPAPHSR----LTCRPTTAPHSRLTPRPTLAPTLQTHLQA 71
Query: 412 -PWAASSVHPPATPSP*LEANATSEHRPNSYESPTPSPSPAAAWHTRVASTVDSQLATRN 236
P S + P TP+P L+ + + P+S +P P+P+P H + S+L R
Sbjct: 72 HPAPHSRLTPRPTPAPTLQTHLQAHPVPHSRLTPRPTPAPTLHTHLQAHPVPHSRLTRRP 131
Query: 235 TSACSMCL------APHTLASQSG 182
T A ++ +PHT S +G
Sbjct: 132 TPAPTLQTHLQAHPSPHTPDSPAG 155
Score = 35.4 bits (80), Expect = 0.84
Identities = 33/124 (26%), Positives = 55/124 (43%), Gaps = 4/124 (3%)
Frame = -1
Query: 541 PHAPSNPSLYTR-RSHALSYLPLMPHASMSNDRTTPTTERTAWVPWAASSVHPPATPSP* 365
P P+L T ++H + + L P + + T T + VP + + P TP+P
Sbjct: 81 PRPTPAPTLQTHLQAHPVPHSRLTPRPTPAP--TLHTHLQAHPVPHSRLTRRP--TPAPT 136
Query: 364 LEANATSEHRPNSYESPTPSPSPAAAWHTR---VASTVDSQLATRNTSACSMCLAPHTLA 194
L+ + + P++ +SP SP P + TR A T+ + L + PHTL
Sbjct: 137 LQTHLQAHPSPHTPDSPAGSPQPPHSRLTRRPTPAPTLQTHLQAHPAPHSRLTRRPHTLD 196
Query: 193 SQSG 182
S +G
Sbjct: 197 SSAG 200
>gb|AAK00310.1|AF315820_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Glaucosphaera
vacuolata]
Length = 1746
Score = 41.6 bits (96), Expect = 0.012
Identities = 28/105 (26%), Positives = 56/105 (52%), Gaps = 2/105 (1%)
Frame = -1
Query: 589 APCAQPAEM*FSASSLPHAPSNPSLYTRRSHALSYLPLMPHASMSNDRTTPTTERTAWVP 410
+P P +S +S ++PS+P++ R+ +SY P PH S S+ + +P++
Sbjct: 1645 SPTYSPTSPTYSPTSPMYSPSSPAMSPARAGGVSYSPSSPHYSPSSPQYSPSSPH----- 1699
Query: 409 WAASSVHPPATPSP*LEANATSEHRPNS--YESPTPSPSPAAAWH 281
++ SS H +PS + ++ ++ P+S Y +P+ SP++ H
Sbjct: 1700 YSPSSPH--YSPSSPQYSPSSPQYSPSSPAYSPSSPAYSPSSPAH 1742
>pir||S27921 nuclear antigen EBNA-3B - human herpesvirus 4
gi|330409|gb|AAA45894.1| nuclear antigen EBNA-3B
Length = 946
Score = 39.7 bits (91), Expect = 0.045
Identities = 50/190 (26%), Positives = 68/190 (35%), Gaps = 10/190 (5%)
Frame = -1
Query: 577 QPAEM*FSASSLPHAPSN--PSLY--TRRSHALSYLPLMPHASMSNDRTTPTTERTAWVP 410
QP + PH P P+ Y T Y P M H + PT T P
Sbjct: 639 QPISFNPAVRPTPHQPPQVEPTFYQSTWVKPPQQYQPQMGHIPY---QPRPTGHSTMLRP 695
Query: 409 -WAASSVHPPA---TPSP*LEANATSEHRPNSYESPTPSPS--PAAAWHTRVASTVDSQL 248
WA +++ PP TP P + T+ RP +P P P P A R A T +
Sbjct: 696 QWAPTTMQPPPRAPTPMPPPQGPPTAMQRPQGAPTPMPPPQGPPTAMQRPRGAPT---PM 752
Query: 247 ATRNTSACSMCLAPHTLASQSGVCGHVVARGCVLGNAC*ECWARHTCTKGIQQRGP*LTC 68
+M L+P L Q G H++ R T G++ P L
Sbjct: 753 PPPQGPPTAMQLSPRALTGQKGPAKHIL---------------RQLLTGGVKSGRPSLKF 797
Query: 67 ASHLYARAAA 38
+ L +AAA
Sbjct: 798 KAALERQAAA 807
>emb|CAC87274.1| LppS protein [Mycoplasma conjunctivae]
Length = 1405
Score = 39.7 bits (91), Expect = 0.045
Identities = 29/89 (32%), Positives = 39/89 (43%)
Frame = -2
Query: 696 GHSTAAAFSSFTTGLSMSVAPHPSLSSCCSSCSGQSHPALSQPKCSSVPVLCRMHPATHP 517
G S+++A SS + G S S + S SS SS S S + S P AT P
Sbjct: 1297 GSSSSSAGSSSSAGSSSSSSSSSSSSSSSSSSSSSSSSSSSSPTPG----------ATTP 1346
Query: 516 CTPGAVTPFPTFPSCLMQACRMTEPPPQQ 430
P TP P+ P+ + +P PQQ
Sbjct: 1347 SAPAPATPGPSAPATPVPPATPPQPQPQQ 1375
>ref|ZP_00140173.1| hypothetical protein [Pseudomonas aeruginosa UCBPP-PA14]
Length = 317
Score = 39.7 bits (91), Expect = 0.045
Identities = 18/46 (39%), Positives = 23/46 (49%), Gaps = 2/46 (4%)
Frame = -2
Query: 636 PHPSLSSCCSSCSGQSHPALSQPKCSSVPVLC--RMHPATHPCTPG 505
PHP+ C C G++H L Q + +PV C R PA P PG
Sbjct: 216 PHPATGLCAEDCLGRAHRQLQQHCAAPLPVFCQARATPAATPAQPG 261
