KCC001681A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001681A_C01 KCC001681A_c01
gCTTAATAGGCTAGCTCGCTACTCCTATTCAGTCTGGTGATCTCTATACATCACCAGTGC
TTTATTCAGTCAATTAGGTCATTTCAGCACCAGCTATGGCCACCATGCTGAACAAGCGTG
TTACCGGCGCCTTCGGCAAGCAGGCGCCGGTGCGCTCGGCCCGCGTCGCCGCTGTGCGCC
CCAGCCGCAGCTCCGTCCGTGTGGCTGCTACCGCTGCTCCCCAGGAGGTTGAGGGCTTCA
AGGTTATGCGCGACGGCATCAAGGTTGCTTCCGATGAGACCCTGCTCACTCCTCGCTTCT
ACACCACCGACTTCGATGAGATGGAGCGCCTGTTCAGCCTGGAGCTGAACAAGAACATGG
ACATGGAGGAGTTCGAGGCGATGCTGAACGAGTTCAAGCTGGACTACAACCAGCGCCACT
TCGTCCGCAACGAGACCTTCAAGGAGGCCGCGGAGAAGATTCAGGGCCCCACCCGCAAGA
TTTTCATTGAGTTCCTGGAGCGCTCGTGCACTGCTGAGTTCTCGGGCTTCCTGCTCTACA
AAGAGCTGGTCGCGCTGAAGCCGACCCGTGTCCGGGATTCCCTATTCCGAGAGCGCCGCG
GTCTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001681A_C01 KCC001681A_c01
         (606 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK32149.1|AF337037_1 copper target homolog 1 protein [Chlamy...   297  9e-80
gb|AAL14712.2|AF426027_1 copper target homolog 1 protein [Chlamy...   291  4e-78
gb|AAF63477.1|AF237671_1 copper response defect 1 protein [Chlam...   197  7e-50
gb|AAL13304.1|AF417577_1 leucine zipper-containing protein [Euph...   157  1e-37
gb|AAB18942.1| AT103 [Arabidopsis thaliana]                           156  2e-37

>gb|AAK32149.1|AF337037_1 copper target homolog 1 protein [Chlamydomonas reinhardtii]
           gi|13604231|gb|AAK32150.1|AF337038_1 copper target
           homolog 1 protein [Chlamydomonas reinhardtii]
          Length = 407

 Score =  297 bits (760), Expect = 9e-80
 Identities = 151/151 (100%), Positives = 151/151 (100%)
 Frame = +3

Query: 96  MATMLNKRVTGAFGKQAPVRSARVAAVRPSRSSVRVAATAAPQEVEGFKVMRDGIKVASD 275
           MATMLNKRVTGAFGKQAPVRSARVAAVRPSRSSVRVAATAAPQEVEGFKVMRDGIKVASD
Sbjct: 1   MATMLNKRVTGAFGKQAPVRSARVAAVRPSRSSVRVAATAAPQEVEGFKVMRDGIKVASD 60

Query: 276 ETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAE 455
           ETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAE
Sbjct: 61  ETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAE 120

Query: 456 KIQGPTRKIFIEFLERSCTAEFSGFLLYKEL 548
           KIQGPTRKIFIEFLERSCTAEFSGFLLYKEL
Sbjct: 121 KIQGPTRKIFIEFLERSCTAEFSGFLLYKEL 151

>gb|AAL14712.2|AF426027_1 copper target homolog 1 protein [Chlamydomonas reinhardtii]
          Length = 407

 Score =  291 bits (746), Expect = 4e-78
 Identities = 149/151 (98%), Positives = 149/151 (98%)
 Frame = +3

Query: 96  MATMLNKRVTGAFGKQAPVRSARVAAVRPSRSSVRVAATAAPQEVEGFKVMRDGIKVASD 275
           MATMLNKRVTGAFGKQA VRSARVAAVRPSRSSVRVA TAAPQEVEGFKVMRDGIKVASD
Sbjct: 1   MATMLNKRVTGAFGKQALVRSARVAAVRPSRSSVRVAVTAAPQEVEGFKVMRDGIKVASD 60

Query: 276 ETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAE 455
           ETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAE
Sbjct: 61  ETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAE 120

Query: 456 KIQGPTRKIFIEFLERSCTAEFSGFLLYKEL 548
           KIQGPTRKIFIEFLERSCTAEFSGFLLYKEL
Sbjct: 121 KIQGPTRKIFIEFLERSCTAEFSGFLLYKEL 151

>gb|AAF63477.1|AF237671_1 copper response defect 1 protein [Chlamydomonas reinhardtii]
           gi|7637739|gb|AAF65221.1|AF226628_1 copper response
           target 1 protein [Chlamydomonas reinhardtii]
          Length = 407

 Score =  197 bits (502), Expect = 7e-50
 Identities = 103/150 (68%), Positives = 120/150 (79%), Gaps = 1/150 (0%)
 Frame = +3

Query: 102 TMLNKRVTGAFGKQAPVRSARVAAVRPSRSSVRVAATAAP-QEVEGFKVMRDGIKVASDE 278
           T+  +R +G    + P RSA VA  RP RS+VRV A+AAP  +  GF+ MRDGIKVA+ E
Sbjct: 4   TLKQQRASGRVSARQPFRSAAVA--RPRRSTVRVQASAAPLNDGLGFETMRDGIKVAAKE 61

Query: 279 TLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAMLNEFKLDYNQRHFVRNETFKEAAEK 458
           TLLTPRFYTTDFDEME+LFS E+N N+DMEE  A LNEF+ DYN+ HFVRNETFK AA+K
Sbjct: 62  TLLTPRFYTTDFDEMEQLFSKEINPNLDMEELNACLNEFRNDYNKVHFVRNETFKAAADK 121

Query: 459 IQGPTRKIFIEFLERSCTAEFSGFLLYKEL 548
           + G TR+IFIEFLERSCTAEFSGFLLYKEL
Sbjct: 122 VTGETRRIFIEFLERSCTAEFSGFLLYKEL 151

>gb|AAL13304.1|AF417577_1 leucine zipper-containing protein [Euphorbia esula]
          Length = 405

 Score =  157 bits (396), Expect = 1e-37
 Identities = 77/121 (63%), Positives = 95/121 (77%), Gaps = 1/121 (0%)
 Frame = +3

Query: 189 SSVRVAATAAPQEVE-GFKVMRDGIKVASDETLLTPRFYTTDFDEMERLFSLELNKNMDM 365
           S+++++AT+         K  + G K   +ETLLTPRFYTTDFDEME LF+ E+NK ++ 
Sbjct: 29  STIKMSATSQSNTTTTATKPSKKGNKKEINETLLTPRFYTTDFDEMETLFNTEINKKLNQ 88

Query: 366 EEFEAMLNEFKLDYNQRHFVRNETFKEAAEKIQGPTRKIFIEFLERSCTAEFSGFLLYKE 545
            EFEA+L EFK DYNQ HFVRN+ FKEAA+K+QGP R+IF+EFLERSCTAEFSGFLLYKE
Sbjct: 89  SEFEALLQEFKTDYNQTHFVRNKEFKEAADKMQGPLRQIFVEFLERSCTAEFSGFLLYKE 148

Query: 546 L 548
           L
Sbjct: 149 L 149

>gb|AAB18942.1| AT103 [Arabidopsis thaliana]
          Length = 373

 Score =  156 bits (394), Expect = 2e-37
 Identities = 74/115 (64%), Positives = 91/115 (78%)
 Frame = +3

Query: 204 AATAAPQEVEGFKVMRDGIKVASDETLLTPRFYTTDFDEMERLFSLELNKNMDMEEFEAM 383
           A+++ P         + G K    E+LLTPRFYTTDF+EME+LF+ E+NKN++  EFEA+
Sbjct: 3   ASSSPPPPTTATSKSKKGTKKEIQESLLTPRFYTTDFEEMEQLFNTEINKNLNEAEFEAL 62

Query: 384 LNEFKLDYNQRHFVRNETFKEAAEKIQGPTRKIFIEFLERSCTAEFSGFLLYKEL 548
           L EFK DYNQ HFVRN+ FKEAA+K+QGP R+IF+EFLERSCTAEFSGFLLYKEL
Sbjct: 63  LQEFKTDYNQTHFVRNKEFKEAADKLQGPLRQIFVEFLERSCTAEFSGFLLYKEL 117



EST assemble image


clone accession position
1 HCL039c03_r AV641715 1 527
2 CM079h12_r AV391947 2 606
3 LC005e08_r AV619236 15 534
4 LC055b07_r AV622826 17 527
5 HCL086b10_r AV644316 31 575
6 MXL048c01_r BP095842 52 453
7 MX033c06_r BP087375 52 514
8 MXL033d09_r BP094962 55 504
9 MXL065h03_r BP096848 69 519




Chlamydomonas reinhardtii
Kazusa DNA Research Institute