KCC001679A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001679A_C01 KCC001679A_c01
ccaacaCAAAAATGCAGCTCCTATCCTCTCGCCCGGCTTGCGTCGCGCTCCCGCGGAGCG
TACAGCGTGCGGCTGCCAAGCCGATGGTCGCCCGCGCGCCCGTGGCTCGTCGTTTTGTCG
CGACGAGGGCGGCTGAGGTACAGGAGGCCGAGGCTGCCGCTGCCCCTGCTGAGGAGGCGG
CTGCTACCCCCCTGGAGCGTGCTAAGAAGGCTCTGGACAGCGAGACCCTGGACAAGGATG
TGCTGACCGCCGCCCTTGCCGAGCTGGAGGCTGAGATGGGTCGCCTGCAGTCGGCCGCCA
ACGAGGCCAACGACCGTGCCAAGTCGCTGGAGGCTTCTTTGGCGAGCGCCAAGGACCAGT
ACCTGCGCCTCAACCCCGACTCTGACAACCTCCGCCGCCGCACGAGAGAGGAGAGCGCCG
CGCTCACCGACAGCGTGCGCGGCGATGTGATCAAGGAGATGCTGCCCATCGTGGACAACT
TCGAGCTGGCGCGGACGCAGGTCAAAGCGGAGAACGAGGCGGAGCAGAAGATCAACAACT
CGTACCCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001679A_C01 KCC001679A_c01
         (548 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK96224.1|AF406936_1 co-chaperone CGE1 precursor isoform b [...   324  5e-88
gb|AAK96223.1|AF406935_1 co-chaperone CGE1 precursor isoform a [...   315  2e-85
ref|NP_568356.1| chloroplast GrpE protein [Arabidopsis thaliana]...    84  1e-15
ref|NP_850840.1| chloroplast GrpE protein [Arabidopsis thaliana]...    84  1e-15
ref|NP_682104.1| heat shock protein [Thermosynechococcus elongat...    79  5e-14

>gb|AAK96224.1|AF406936_1 co-chaperone CGE1 precursor isoform b [Chlamydomonas reinhardtii]
          Length = 260

 Score =  324 bits (830), Expect = 5e-88
 Identities = 174/178 (97%), Positives = 174/178 (97%)
 Frame = +3

Query: 12  MQLLSSRPACVALPRSVQRAAAKPMVARAPVARRFVATRAAEVQEAEAAAAPAEEAAATP 191
           MQLLSSRPACVALPRSVQRAAAKPMVARAPVARRFVATRAAEVQEAEAAAAPAEEAAATP
Sbjct: 1   MQLLSSRPACVALPRSVQRAAAKPMVARAPVARRFVATRAAEVQEAEAAAAPAEEAAATP 60

Query: 192 LERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEANDRAKSLEASLASAKDQYLRL 371
           LERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEANDRAKSLEASLASAKDQYLRL
Sbjct: 61  LERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEANDRAKSLEASLASAKDQYLRL 120

Query: 372 NPDSDNLRRRTREESAALTDSVRGDVIKEMLPIVDNFELARTQVKAENEAEQKINNSY 545
           N D DN RRRTREESAALTDSVRGDVIKEMLPIVDNFELARTQVKAE EAEQKINNSY
Sbjct: 121 NADFDNFRRRTREESAALTDSVRGDVIKEMLPIVDNFELARTQVKAETEAEQKINNSY 178

>gb|AAK96223.1|AF406935_1 co-chaperone CGE1 precursor isoform a [Chlamydomonas reinhardtii]
          Length = 258

 Score =  315 bits (808), Expect = 2e-85
 Identities = 172/178 (96%), Positives = 172/178 (96%)
 Frame = +3

Query: 12  MQLLSSRPACVALPRSVQRAAAKPMVARAPVARRFVATRAAEVQEAEAAAAPAEEAAATP 191
           MQLLSSRPACVALPRSVQRAAAKPMVARAPVARRFVATRAAE  EAEAAAAPAEEAAATP
Sbjct: 1   MQLLSSRPACVALPRSVQRAAAKPMVARAPVARRFVATRAAE--EAEAAAAPAEEAAATP 58

Query: 192 LERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEANDRAKSLEASLASAKDQYLRL 371
           LERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEANDRAKSLEASLASAKDQYLRL
Sbjct: 59  LERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEANDRAKSLEASLASAKDQYLRL 118

Query: 372 NPDSDNLRRRTREESAALTDSVRGDVIKEMLPIVDNFELARTQVKAENEAEQKINNSY 545
           N D DN RRRTREESAALTDSVRGDVIKEMLPIVDNFELARTQVKAE EAEQKINNSY
Sbjct: 119 NADFDNFRRRTREESAALTDSVRGDVIKEMLPIVDNFELARTQVKAETEAEQKINNSY 176

>ref|NP_568356.1| chloroplast GrpE protein [Arabidopsis thaliana]
           gi|13878047|gb|AAK44101.1|AF370286_1 putative
           chloroplast GrpE protein [Arabidopsis thaliana]
           gi|17104679|gb|AAL34228.1| putative chloroplast GrpE
           protein [Arabidopsis thaliana]
          Length = 324

 Score = 84.3 bits (207), Expect = 1e-15
 Identities = 44/137 (32%), Positives = 74/137 (53%)
 Frame = +3

Query: 135 EVQEAEAAAAPAEEAAATPLERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEAND 314
           E + A A    AEE  A  +    K+      D +     +AE+EA +  ++       D
Sbjct: 91  ENENASAEEGEAEEEEAAVITALLKSYKEALADNN--EGKIAEIEASLKSIEDEKFLLAD 148

Query: 315 RAKSLEASLASAKDQYLRLNPDSDNLRRRTREESAALTDSVRGDVIKEMLPIVDNFELAR 494
           +  SL   L+  +D+ +R++ D DN R+RT  E   L  + +G+V++ +L ++DNFE A+
Sbjct: 149 KVASLSNELSVERDRLIRISADFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAK 208

Query: 495 TQVKAENEAEQKINNSY 545
           +Q+K E E E+K+ NSY
Sbjct: 209 SQIKVETEGEEKVTNSY 225

>ref|NP_850840.1| chloroplast GrpE protein [Arabidopsis thaliana]
           gi|4583546|emb|CAB40381.1| GrpE protein [Arabidopsis
           thaliana] gi|9759048|dbj|BAB09570.1| GrpE protein
           [Arabidopsis thaliana]
          Length = 326

 Score = 84.3 bits (207), Expect = 1e-15
 Identities = 44/137 (32%), Positives = 74/137 (53%)
 Frame = +3

Query: 135 EVQEAEAAAAPAEEAAATPLERAKKALDSETLDKDVLTAALAELEAEMGRLQSAANEAND 314
           E + A A    AEE  A  +    K+      D +     +AE+EA +  ++       D
Sbjct: 93  ENENASAEEGEAEEEEAAVITALLKSYKEALADNN--EGKIAEIEASLKSIEDEKFLLAD 150

Query: 315 RAKSLEASLASAKDQYLRLNPDSDNLRRRTREESAALTDSVRGDVIKEMLPIVDNFELAR 494
           +  SL   L+  +D+ +R++ D DN R+RT  E   L  + +G+V++ +L ++DNFE A+
Sbjct: 151 KVASLSNELSVERDRLIRISADFDNFRKRTERERLNLVSNAQGEVVENLLAVLDNFERAK 210

Query: 495 TQVKAENEAEQKINNSY 545
           +Q+K E E E+K+ NSY
Sbjct: 211 SQIKVETEGEEKVTNSY 227

>ref|NP_682104.1| heat shock protein [Thermosynechococcus elongatus BP-1]
           gi|22295038|dbj|BAC08866.1| heat shock protein
           [Thermosynechococcus elongatus BP-1]
          Length = 252

 Score = 78.6 bits (192), Expect = 5e-14
 Identities = 51/146 (34%), Positives = 78/146 (52%), Gaps = 3/146 (2%)
 Frame = +3

Query: 117 VATRAAEVQEAEAAAAP---AEEAAATPLERAKKALDSETLDKDVLTAALAELEAEMGRL 287
           V   AAE QE E         ++   TP+E  +   ++   ++D  + A +   A++   
Sbjct: 20  VTNPAAEAQEGEITPDTPDTVDKVENTPVENVENPAEATPGEEDQASEATSANAADLLE- 78

Query: 288 QSAANEANDRAKSLEASLASAKDQYLRLNPDSDNLRRRTREESAALTDSVRGDVIKEMLP 467
           Q AA EA     SL   +     QY+RL  D +N R+RT+ E   L   ++  VI ++LP
Sbjct: 79  QIAALEA--AKASLSQVVEERNSQYIRLAADFENFRKRTQREKEELELQIKCSVIADLLP 136

Query: 468 IVDNFELARTQVKAENEAEQKINNSY 545
           +VD+FELART ++ E EAE+KI+ SY
Sbjct: 137 VVDSFELARTHIQTETEAEEKIHRSY 162



EST assemble image


clone accession position
1 LCL090d11_r AV631219 1 350
2 CM079g11_r AV391963 7 592
3 MXL019b05_r BP094176 7 506




Chlamydomonas reinhardtii
Kazusa DNA Research Institute