KCC001673A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001673A_C01 KCC001673A_c01
tcaagacacatcgccagagtatagaagcggtctcttcaacagtactactgaagacacgga
gacgccacacaatgcttcgcAAATTCGCGTTCGTCGCGCTTCTAGCGATGTGCCTGTCAG
GGGCCTGCTTCGCTGAGAAGTCTGAGTTCAAGCATCTATACAAGAAGATTAAGGACGTGC
CAGGCGTGGCGAAGGGCGAGGATGGCCAGTTCTACATCAACGTGGAGGAGGAGAAGTTCT
ACGTGGTGAAGGACCAGGAGAGCAAGAACATCTACTTTGTCAATGAGGCTACCAGCGAGC
CCCAGTGGCACGACCCTCGCGGCCCTGCTCCCAAGGCTGGCGAGAACAACGTTGACATCA
CGATTCCCCTGGAGCCTCCCAGCCTGAAGGCCAAGGGCAGCACGCTCACCGTCGCCTTCG
TCGCTATGCTGCCTGTGCTTCTCTTCGCCGGTGGCACCTTCGCGCGCATCATTTACCTGC
AGATCCACTACCCCGAGATGCTGTGGCCCACCAAGGAGCGCCGCGACCGCCGCCGTGCTT
CCGGCGGCAAGAACAAGCCGCAGAAGCAGCGCGGCAAGATGAACCAGGACGGCAAGGGCG
GCCGCTCCGCCAACTCGTAAATGGATGGAGGCGGGACTGCTGGAGCAGTGTGAACGTGGA
GCAGCAGCAGCAGCAGCATGGAGGCAGACAGGCGCAGATGATAGCGGTGCATGCTGCCGA
GCTGTGCCGCGCGCTGCGGTCCGTGGCTGGCCCACGGAGCGTTGTTGGAGAGCAGATGCA
GCCAACGGCGGGAAGGCTAGGAGCTGGCGCCCATCTGCTTGGCGCTGGGAGCGCGGCTTG
CAGCGGCGAAAGGGGAGGAATGGCAACTGGGGCTCAGTGGATTCTGGGCAATGGGCATCC
ATGCACGGCATGCCTGAAAATTCTTGGGGATATGGCGTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001673A_C01 KCC001673A_c01
         (939 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [...    49  2e-04
ref|ZP_00089621.1| COG0438: Glycosyltransferase [Azotobacter vin...    47  4e-04
ref|XP_310434.1| ENSANGP00000005649 [Anopheles gambiae] gi|21293...    46  0.001
ref|NP_295856.1| conserved hypothetical protein [Deinococcus rad...    45  0.001
pir||T43481 probable mucin DKFZp434C196.1 - human (fragment) gi|...    43  0.007

>pir||T44768 antifreeze glycopeptide AFGP polyprotein precursor [imported] -
           Boreogadus saida gi|2078483|gb|AAC60129.1| antifreeze
           glycopeptide AFGP polyprotein precursor
          Length = 507

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 42/153 (27%), Positives = 61/153 (39%), Gaps = 3/153 (1%)
 Frame = +1

Query: 295 ASPSGTTLAALLPRLARTTLTSRFPW-SLPA*RPRAARSPSPSSLCCLCFSSPVA--PSR 465
           A+P+    AA     A T  T+  P  +  A  P  A +P+ ++      ++  A  P+R
Sbjct: 71  ATPATAATAATTAATAATAATAATPARAARAATPATAATPATAATAATAATAATAETPAR 130

Query: 466 ASFTCRSTTPRCCGPPRSAATAAVLPAARTSRRSSAAR*TRTARAAAPPTRKWMEAGLLE 645
           A+    + TP     P +AATAA    + T+  ++ A    TA   A P      A    
Sbjct: 131 AATPATAATPATAATPATAATAATAATSATAATAARAATPATAATPATPATAARAARAAT 190

Query: 646 QCERGAAAAAAWRQTGADDSGACCRAVPRAAVR 744
                 AA AA   T A  + A   A P  A R
Sbjct: 191 PATAATAATAATAATAATAATAATAATPARAAR 223

 Score = 40.0 bits (92), Expect = 0.057
 Identities = 51/184 (27%), Positives = 69/184 (36%), Gaps = 5/184 (2%)
 Frame = +1

Query: 262 ARTSTLSMRLPASPSGTTLAALLPRLARTTLTSRFPWSLPA*RPRAARSPSPSSLCCLCF 441
           AR +T +    A+   T   A     A T  T+  P        RAAR+ +P++      
Sbjct: 297 ARAATPATPATAATPATPATAATAATAATAATAATP-------ARAARAATPATAATPAT 349

Query: 442 SSPVAPSRASFTCRST-TPRCCGPPRSAATAAVLPAART-SRRSSAAR*TRTARAAAP-- 609
           ++  A +  + T  +  TP       + ATAA    A T +  ++AA   R ARAA P  
Sbjct: 350 AATAATAATAATAATAATPARAARAATPATAATAATAATAATAATAATPARAARAATPAT 409

Query: 610 PTRKWMEAGLLEQCERGAAAAAAWRQTGADDSGACCRAVP-RAAVRGWPTERCWRADAAN 786
           P      A          AA AA   T A  + A     P RAA    P      A A  
Sbjct: 410 PATPATPATPATAATAATAATAATAATAATAATAATAPTPARAARAATPATGATPATAPT 469

Query: 787 GGKA 798
            G A
Sbjct: 470 AGTA 473

 Score = 38.5 bits (88), Expect = 0.16
 Identities = 42/166 (25%), Positives = 59/166 (35%), Gaps = 7/166 (4%)
 Frame = +1

Query: 262 ARTSTLSMRLPASPSGTTLAALLPRLARTTLTSRFPWSLPA*RPRAARSPSPSSLCCLCF 441
           AR +  +    A+   T   A     A T  T+  P        RAAR+ +P++      
Sbjct: 333 ARAARAATPATAATPATAATAATAATAATAATAATP-------ARAARAATPATAATAAT 385

Query: 442 SSPVA-------PSRASFTCRSTTPRCCGPPRSAATAAVLPAARTSRRSSAAR*TRTARA 600
           ++  A       P+RA+      TP     P + ATAA    A T+  ++ A    TA  
Sbjct: 386 AATAATAATAATPARAARAATPATPATPATPATPATAATAATAATAATAATAATAATAAT 445

Query: 601 AAPPTRKWMEAGLLEQCERGAAAAAAWRQTGADDSGACCRAVPRAA 738
           A  P R    A           A A    T A  + A   A P  A
Sbjct: 446 APTPAR---AARAATPATGATPATAPTAGTAATAATAATAATPARA 488

 Score = 37.0 bits (84), Expect = 0.48
 Identities = 50/192 (26%), Positives = 71/192 (36%), Gaps = 9/192 (4%)
 Frame = +1

Query: 196 ARMASSTSTWRRRSSTW*RTRRARTSTLSMRLPASPSGTTLAALLPRLARTTLTSRFPWS 375
           A   ++T+     ++T  R  RA T   +    A+P+    AA     A     +R    
Sbjct: 79  AATTAATAATAATAATPARAARAATPATA----ATPATAATAATAATAATAETPARAATP 134

Query: 376 LPA*RPRAARSPSPSSLCCLCFSSPVAPSRASFTCRSTTPRCCGPPRSAATA-----AVL 540
             A  P  A +P+ ++      +S  A + A    R+ TP     P + ATA     A  
Sbjct: 135 ATAATPATAATPATAATAATAATSATAATAA----RAATPATAATPATPATAARAARAAT 190

Query: 541 PA----ARTSRRSSAAR*TRTARAAAPPTRKWMEAGLLEQCERGAAAAAAWRQTGADDSG 708
           PA    A T+  ++ A    TA  AA P R    A           A AA   T A  + 
Sbjct: 191 PATAATAATAATAATAATAATAATAATPAR---AARAATPATAPTPATAATPATAATAAT 247

Query: 709 ACCRAVPRAAVR 744
           A   A P  A R
Sbjct: 248 APTAATPARAAR 259

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 48/182 (26%), Positives = 63/182 (34%), Gaps = 3/182 (1%)
 Frame = +1

Query: 262 ARTSTLSMRLPASPSGTTLAALLP-RLARTTLTSRFPWSLPA*RPRAARSPS--PSSLCC 432
           A  +T +    A+ + T   A  P R AR    +  P    A  P  A + +  P++   
Sbjct: 195 ATAATAATAATAATAATAATAATPARAARAATPATAPTPATAATPATAATAATAPTAATP 254

Query: 433 LCFSSPVAPSRASFTCRSTTPRCCGPPRSAATAAVLPAARTSRRSSAAR*TRTARAAAPP 612
              +    P+ A+    + TP     P +AAT A    A T  R  AA     A AA P 
Sbjct: 255 ARAARAATPATAATLATAATPATPATPATAATDATAATAATPAR--AATPATPATAATPA 312

Query: 613 TRKWMEAGLLEQCERGAAAAAAWRQTGADDSGACCRAVPRAAVRGWPTERCWRADAANGG 792
           T                AA AA   T A  + A   A P  A    P      A AA   
Sbjct: 313 T----------PATAATAATAATAATAATPARAARAATPATAAT--PATAATAATAATAA 360

Query: 793 KA 798
            A
Sbjct: 361 TA 362

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 35/124 (28%), Positives = 44/124 (35%)
 Frame = +1

Query: 433 LCFSSPVAPSRASFTCRSTTPRCCGPPRSAATAAVLPAARTSRRSSAAR*TRTARAAAPP 612
           L  + P A +RA+    + TP     P +AATAA    A T+   + A    TA  AA  
Sbjct: 23  LLVARPAAAARAATPATAATPATAATPATAATAATEATAATAATPATAATPATAATAAT- 81

Query: 613 TRKWMEAGLLEQCERGAAAAAAWRQTGADDSGACCRAVPRAAVRGWPTERCWRADAANGG 792
                            AA AA   T A  + A   A P  A    P      A AA   
Sbjct: 82  ----------------TAATAATAATAATPARAARAATPATAAT--PATAATAATAATAA 123

Query: 793 KARS 804
            A +
Sbjct: 124 TAET 127

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 51/226 (22%), Positives = 76/226 (33%), Gaps = 1/226 (0%)
 Frame = +1

Query: 124 PASLRSLSSSIYTRRLRTCQAWRRARMASSTSTWRRRSSTW*RTRRARTSTLSMRLPASP 303
           PA+  + +++       T     RA  A++ +T    ++       A  +T +    A+ 
Sbjct: 233 PATAATPATAATAATAPTAATPARAARAATPATAATLATAATPATPATPATAATDATAAT 292

Query: 304 SGTTLAALLPRLARTTLTSRFPWSLPA*RPRAARSPSPSSLCCLCFSSPVAPSRASFTCR 483
           + T   A  P    T  T   P         A  + + ++      ++P   +RA+    
Sbjct: 293 AATPARAATPATPATAATPATP---------ATAATAATAATAATAATPARAARAATPAT 343

Query: 484 STTPRCCGPPRSAATAAVLPAARTSRRSSAAR*TRTARAAAPPTRKWMEAGLLEQCERGA 663
           + TP       +AATAA    A T          R ARAA P T                
Sbjct: 344 AATPATAATAATAATAATAATAATP--------ARAARAATPAT----------AATAAT 385

Query: 664 AAAAAWRQTGADDSGACCRAVPRA-AVRGWPTERCWRADAANGGKA 798
           AA AA   T A  + A   A P   A    P      A AA    A
Sbjct: 386 AATAATAATAATPARAARAATPATPATPATPATPATAATAATAATA 431

>ref|ZP_00089621.1| COG0438: Glycosyltransferase [Azotobacter vinelandii]
          Length = 623

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 41/127 (32%), Positives = 52/127 (40%), Gaps = 2/127 (1%)
 Frame = +2

Query: 200 GWPVLHQRGGGEVLRGEGPGEQEHLLCQ*GYQRAPVARPSRPCSQGWREQR*HHDSPGAS 379
           G P + QR G  ++R              G +RA V RPSR   +  R    HH  PGA 
Sbjct: 3   GRPPVPQRPGRRLVRRAA-----------GDRRAGVPRPSRKDGRAQRPDN-HHGEPGAH 50

Query: 380 QPEGQGQHAHRRLRRYAACASLRRWHLRAHHLPADPLPRD--AVAHQGAPRPPPCFRRQE 553
           +P+  GQH    LRR+        +H R  H     L RD  A +  G P P P     +
Sbjct: 51  RPQQTGQHPRPGLRRHL-------FHHRLLHGDPQRLARDRPADSRGGRPSPHPARHLDQ 103

Query: 554 QAAEAAR 574
           QA    R
Sbjct: 104 QARRLPR 110

>ref|XP_310434.1| ENSANGP00000005649 [Anopheles gambiae] gi|21293904|gb|EAA06049.1|
           ENSANGP00000005649 [Anopheles gambiae str. PEST]
          Length = 327

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 62/222 (27%), Positives = 87/222 (38%), Gaps = 2/222 (0%)
 Frame = +1

Query: 160 TRRLRTCQAWRRARMASSTSTWRRRSSTW*RTRRARTSTLSMRLPASPSGTTLAALLPRL 339
           T   +T  +  R++  +STS   RR+ST     RART         + S T       R 
Sbjct: 26  TSAKKTTSSNSRSKKTTSTSNNTRRTSTSVNRTRARTGPNVWTRSTTTSATASRGTPART 85

Query: 340 ARTTLTSRFPWSLPA*RPRAARSPSPSSLCCLCFSSPVAPSRASFTCRSTTPRCCGPPRS 519
           AR   TS    + P      A S +P++ C     SPV P     T RS   R    P +
Sbjct: 86  ARR--TSMSAKASPVCTVAHACS-APTTACTSRRRSPV-PRDCRCTLRSRF-RTRSRPVT 140

Query: 520 AATAAVLPAARTSRRSSAAR*TRTARAAAPPTRKWMEAGLLEQCERGAAAAAAWRQ--TG 693
           + +A     ART+RR+S +     AR A    R W  +  +      A+     R+  T 
Sbjct: 141 SVSACPARWARTARRTSTSARAIRARTA----RAWTASATIRASATRASKGRTARRTLTS 196

Query: 694 ADDSGACCRAVPRAAVRGWPTERCWRADAANGGKARSWRPSA 819
              +G  C A      R W       A A   G AR+ RP++
Sbjct: 197 VSSTGRACTA------RAWMAATTTSATATGCGAARTARPTS 232

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 67/241 (27%), Positives = 94/241 (38%), Gaps = 38/241 (15%)
 Frame = +1

Query: 130 SLRSLSSSIYTRRLRTCQAWRRARMASSTSTWRRRSSTW*RTRR---ARTST-LSMRLPA 297
           S ++ S+S  TRR  T  +  R R  +  + W R ++T     R   ART+   SM   A
Sbjct: 38  SKKTTSTSNNTRRTST--SVNRTRARTGPNVWTRSTTTSATASRGTPARTARRTSMSAKA 95

Query: 298 SPSGTTLAAL--------------LPRLARTTLTSRFPW---------SLPA*RPRAARS 408
           SP  T   A               +PR  R TL SRF           + PA   R AR 
Sbjct: 96  SPVCTVAHACSAPTTACTSRRRSPVPRDCRCTLRSRFRTRSRPVTSVSACPARWARTARR 155

Query: 409 PSPSSLCCLCFSSPVAPSRASF-----------TCRSTTPRCCGPPRSAATAAVLPAART 555
            S S+      ++    + A+            T R T        R+    A + A  T
Sbjct: 156 TSTSARAIRARTARAWTASATIRASATRASKGRTARRTLTSVSSTGRACTARAWMAATTT 215

Query: 556 SRRSSAAR*TRTARAAAPPTRKWMEAGLLEQCERGAAAAAAWRQTGADDSGACCRAVPRA 735
           S  ++     RTAR    PT   + A     C    A++AAWR + +  SG CCRA  R+
Sbjct: 216 SATATGCGAARTAR----PTSNTLPA----PCR---ASSAAWRTSSSTGSG-CCRARSRS 263

Query: 736 A 738
           +
Sbjct: 264 S 264

>ref|NP_295856.1| conserved hypothetical protein [Deinococcus radiodurans]
           gi|7471338|pir||B75310 conserved hypothetical protein -
           Deinococcus radiodurans  (strain R1)
           gi|6459930|gb|AAF11681.1|AE002048_1 conserved
           hypothetical protein [Deinococcus radiodurans]
          Length = 528

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 54/152 (35%), Positives = 68/152 (44%), Gaps = 28/152 (18%)
 Frame = +1

Query: 379 PA*RPR-AARSPS-------PSSLCCLCFSSPVAPSRASFTCRS------TTPRCCGPPR 516
           PA RP  + R PS       PS+  C   S+P    RA+  CR+      T+PR CGP  
Sbjct: 368 PATRPSPSGRRPSTPVTGWWPSATGCR-LSAPRRCRRATKRCRTATGCGRTSPR-CGPSS 425

Query: 517 SAATAAVLPAARTS-RRSSAAR*TR---------TARAAAP--PTRK--WMEAGLLEQCE 654
            +  AA   + RTS RR+ A+R +R         +A AA P  PTRK  W   G    C 
Sbjct: 426 GSCRAATRRSPRTSPRRARASRASRPTIPAPAANSASAAPPNSPTRKTNWSTPG---WCP 482

Query: 655 RGAAAAAAWRQTGADDSGACCRAVPRAAVRGW 750
           R AA+  + R  GA          P A  RGW
Sbjct: 483 RSAASTPSSRSPGAPPPRVGPGPEPTARRRGW 514

>pir||T43481 probable mucin DKFZp434C196.1 - human (fragment)
           gi|6599134|emb|CAB63715.1| hypothetical protein [Homo
           sapiens]
          Length = 580

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 50/171 (29%), Positives = 65/171 (37%), Gaps = 4/171 (2%)
 Frame = +1

Query: 106 RCACQGPASLRSL----SSSIYTRRLRTCQAWRRARMASSTSTWRRRSSTW*RTRRARTS 273
           R +  G +S  SL    S +  TR   +    R   MAS T T  R S T    R + T 
Sbjct: 394 RASLTGTSSTASLTRTPSRASLTRTQSSSSLTRTPSMASLTRTPPRASLTRTPPRASLTR 453

Query: 274 TLSMRLPASPSGTTLAALLPRLARTTLTSRFPWSLPA*RPRAARSPSPSSLCCLCFSSPV 453
           T        P   +L    PR + T   S         R    R+PS +SL        +
Sbjct: 454 T--------PPRASLTRTPPRASLTRTPSMVSLKRSPSRASLTRTPSRASLT-------M 498

Query: 454 APSRASFTCRSTTPRCCGPPRSAATAAVLPAARTSRRSSAAR*TRTARAAA 606
            PSRAS T   +T    G P +A+     P A  +R    A  TRT   A+
Sbjct: 499 TPSRASLTRTPSTASLTGTPPTASLTRTPPTASLTRSPPTASLTRTPSTAS 549

 Score = 42.0 bits (97), Expect = 0.015
 Identities = 56/205 (27%), Positives = 74/205 (35%)
 Frame = +1

Query: 139 SLSSSIYTRRLRTCQAWRRARMASSTSTWRRRSSTW*RTRRARTSTLSMRLPASPSGTTL 318
           S S +  TR        RR   AS T T  R S T   +R +   T           T L
Sbjct: 1   SPSRASLTRTPPRASLMRRPSTASLTRTPSRASPTRMPSRASLKMTPFRASLTKMESTAL 60

Query: 319 AALLPRLARTTLTSRFPWSLPA*RPRAARSPSPSSLCCLCFSSPVAPSRASFTCRSTTPR 498
              LPR +     +R   SL    PRA+ +  P        +SP  PSRAS T R     
Sbjct: 61  LRTLPRASLMRTPTRA--SLMRTPPRASPTRKPPR------ASPRTPSRASPTRRLPRAS 112

Query: 499 CCGPPRSAATAAVLPAARTSRRSSAAR*TRTARAAAPPTRKWMEAGLLEQCERGAAAAAA 678
             G P  A+     P A  +   S A  T T  +A+P        G   +         A
Sbjct: 113 PMGSPHRASPMRTPPRASPTGTPSTASPTGTPSSASP-------TGTPPRASPTGTPPRA 165

Query: 679 WRQTGADDSGACCRAVPRAAVRGWP 753
           W  T +  + +  R   RA++  WP
Sbjct: 166 W-ATRSPSTASLTRTPSRASLTRWP 189

 Score = 32.7 bits (73), Expect = 9.0
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 6/139 (4%)
 Frame = +1

Query: 208 SSTSTWRRRSSTW*RTRRARTSTLSMRLPASPSGTTLAALLPRLART-TLTSRFPWSLPA 384
           +S  T  R S T   +R + T T S    ASP+ T   A L ++  T ++T   P + P 
Sbjct: 279 ASPRTPPRASPTTTPSRASLTRTPSW---ASPTTTPSRASLMKMESTVSITRTPPRASPT 335

Query: 385 *RPRAARSPSPSSLCCLCFSSPVA-----PSRASFTCRSTTPRCCGPPRSAATAAVLPAA 549
             P  A      S   L  S   A     PSRAS     +     G P  A+     P A
Sbjct: 336 GTPSRASPTGTPSRASLTGSPSRASLTGTPSRASLIGTPSRASLIGTPSRASLTGTPPRA 395

Query: 550 RTSRRSSAAR*TRTARAAA 606
             +  SS A  TRT   A+
Sbjct: 396 SLTGTSSTASLTRTPSRAS 414



EST assemble image


clone accession position
1 CM078g05_r AV391823 1 577
2 LC026b07_r AV620734 421 939




Chlamydomonas reinhardtii
Kazusa DNA Research Institute