KCC001672A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001672A_C01 KCC001672A_c01
ctctttCGCTCAACCACGGGTAGATTACCGTTCTGCTAAACATAGCGTTCGGTCTTGCCC
TTCCCGATTCAAGTAGACTTCTTTGCTTCTTTCGAACTCTTAAGGTTCGGCGTTCAGCAG
TTGGCTCGTGTGAAGCTTGAGTCAGTTCCCATTTTGACGGGCGTCCCCAGCAGCAGCGCA
TTTCAGGCGGCGGCAGCGACTTTTTAGCAGCACAGCGCCAGGATGCCGAAGAACAAGGGC
AAGGGTGGTAAGAACCGTAAGAGGGGAAAGAACGAGAACGAGGAGGAGAAGCGCGAGCTG
GTCTACAAGGAGGACGGCCAGGAGTATGCCCAAGTGATCCGCATGCTCGGAAACGGCCGC
CTTGAGGCGCAGTGCATTGACGGCAAGAAGCGTCTATGCAACATCCGCGGCAAGATGCGG
AAGAAGGTGTGGGTGGCCCAGGGTGACATCGTGCTGGTGGGTCTTCGCGACTACCAGGAC
GAGAAGGCGGACGTCATTATGAAGTACACAGCGGATGAGGCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001672A_C01 KCC001672A_c01
         (524 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD91550.1| eukaryotic translation initiation factor 1A [Ory...   179  1e-44
gb|AAK55703.1|AF378900_1 At2g04520/T1O3.7 [Arabidopsis thaliana]...   179  1e-44
ref|NP_178531.1| translation initiation factor eIF-1A -related [...   179  1e-44
ref|XP_312806.1| ENSANGP00000016723 [Anopheles gambiae] gi|21296...   178  3e-44
sp|O75642|IF1H_HUMAN Putative eukaryotic translation initiation ...   178  3e-44

>emb|CAD91550.1| eukaryotic translation initiation factor 1A [Oryza sativa (japonica
           cultivar-group)]
          Length = 142

 Score =  179 bits (455), Expect = 1e-44
 Identities = 85/100 (85%), Positives = 92/100 (92%)
 Frame = +1

Query: 223 MPKNKGKGGKNRKRGKNENEEEKRELVYKEDGQEYAQVIRMLGNGRLEAQCIDGKKRLCN 402
           MPKNKGKGGKNRKRGKNE ++EKRELV+KEDGQEYAQV RMLGNGR EAQCIDG KRLC+
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVARMLGNGRCEAQCIDGTKRLCH 60

Query: 403 IRGKMRKKVWVAQGDIVLVGLRDYQDEKADVIMKYTADEA 522
           IRGKM KKVW+A GDIVLVGLRDYQD+KADVI+KY  DEA
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEA 100

>gb|AAK55703.1|AF378900_1 At2g04520/T1O3.7 [Arabidopsis thaliana] gi|15450561|gb|AAK96458.1|
           At2g04520/T1O3.7 [Arabidopsis thaliana]
          Length = 145

 Score =  179 bits (455), Expect = 1e-44
 Identities = 83/100 (83%), Positives = 93/100 (93%)
 Frame = +1

Query: 223 MPKNKGKGGKNRKRGKNENEEEKRELVYKEDGQEYAQVIRMLGNGRLEAQCIDGKKRLCN 402
           MPKNKGKGGKNRKRGKNE ++EKREL++KEDGQEYAQV+RMLGNGR EA CIDG KRLC+
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 403 IRGKMRKKVWVAQGDIVLVGLRDYQDEKADVIMKYTADEA 522
           IRGKM KKVW+A GDIVLVGLRDYQD+KADVI+KY +DEA
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEA 100

>ref|NP_178531.1| translation initiation factor eIF-1A -related [Arabidopsis
           thaliana] gi|25411086|pir||D84458 probable translation
           initiation factor eIF-1A [imported] - Arabidopsis
           thaliana gi|4587600|gb|AAD25828.1| putative translation
           initiation factor eIF-1A [Arabidopsis thaliana]
           gi|21618180|gb|AAM67230.1| putative translation
           initiation factor eIF-1A [Arabidopsis thaliana]
          Length = 145

 Score =  179 bits (455), Expect = 1e-44
 Identities = 83/100 (83%), Positives = 93/100 (93%)
 Frame = +1

Query: 223 MPKNKGKGGKNRKRGKNENEEEKRELVYKEDGQEYAQVIRMLGNGRLEAQCIDGKKRLCN 402
           MPKNKGKGGKNRKRGKNE ++EKREL++KEDGQEYAQV+RMLGNGR EA CIDG KRLC+
Sbjct: 1   MPKNKGKGGKNRKRGKNEADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCH 60

Query: 403 IRGKMRKKVWVAQGDIVLVGLRDYQDEKADVIMKYTADEA 522
           IRGKM KKVW+A GDIVLVGLRDYQD+KADVI+KY +DEA
Sbjct: 61  IRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMSDEA 100

>ref|XP_312806.1| ENSANGP00000016723 [Anopheles gambiae] gi|21296326|gb|EAA08471.1|
           ENSANGP00000016723 [Anopheles gambiae str. PEST]
          Length = 158

 Score =  178 bits (452), Expect = 3e-44
 Identities = 82/103 (79%), Positives = 92/103 (88%)
 Frame = +1

Query: 214 SARMPKNKGKGGKNRKRGKNENEEEKRELVYKEDGQEYAQVIRMLGNGRLEAQCIDGKKR 393
           S  MPKNKGKGGKNR+RGKNENE EKREL++KED QEYAQV +MLGNGRLEA C DG KR
Sbjct: 8   SVAMPKNKGKGGKNRRRGKNENESEKRELIFKEDEQEYAQVTKMLGNGRLEAMCFDGVKR 67

Query: 394 LCNIRGKMRKKVWVAQGDIVLVGLRDYQDEKADVIMKYTADEA 522
           LC+IRGK+RKKVW+ QGDI+L+GLRDYQD KADVI+KYT DEA
Sbjct: 68  LCHIRGKLRKKVWINQGDIILIGLRDYQDSKADVILKYTPDEA 110

>sp|O75642|IF1H_HUMAN Putative eukaryotic translation initiation factor 1A (eIF-1A)
           (eIF-4C) gi|3264536|emb|CAA17281.1| dJ163M9.1 (protein
           synthesis factor) [Homo sapiens]
          Length = 144

 Score =  178 bits (452), Expect = 3e-44
 Identities = 83/100 (83%), Positives = 91/100 (91%)
 Frame = +1

Query: 223 MPKNKGKGGKNRKRGKNENEEEKRELVYKEDGQEYAQVIRMLGNGRLEAQCIDGKKRLCN 402
           MPKNKGKGGKNR+RGKNENE EKRELV+KEDGQEYAQVI+MLGNGRLEA C DG KRLC+
Sbjct: 1   MPKNKGKGGKNRRRGKNENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCH 60

Query: 403 IRGKMRKKVWVAQGDIVLVGLRDYQDEKADVIMKYTADEA 522
           IRGK+RKKVW+   DI+LVGLRDYQD KADVI+KY ADEA
Sbjct: 61  IRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEA 100



EST assemble image


clone accession position
1 CM078e02_r AV391803 1 593
2 CM098a10_r AV392868 1 503
3 HC045g08_r AV635390 7 473
4 HC003a10_r AV632031 9 496
5 LC055e10_r AV622850 16 501
6 HC100g10_r AV639547 35 524
7 HC064g02_r AV636823 45 502




Chlamydomonas reinhardtii
Kazusa DNA Research Institute