KCC001669A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001669A_C01 KCC001669A_c01
tgcatacacgtgcagccattaaccagagtcgctggaagagagagactaggcacgctagcc
tcgtctcggcaccgacatgcGCGGCTTTCCGACACACCTTCACACGCGCCAAGTAGTGAA
CTCTACCCCATCCAACAAACCACTTGTAATCCAATATCACTGCGTCAATAAGTAGCGTCT
GGGGAGGGTGGGGGCAGATCATCACCTCGCATCCATAGCGCCCCCATCGGCCAGCCTATT
CGACCCGGCAGCCGCGCCCGCAATGGCGATGATCCAGGAATATCTTGAATCCCTTGAAGA
CGCTGTAGGACAGCTTGAACAGCAGATAGCTCAAGCCAATAAGCAGGGAGACTGTGTGCA
GCAGCTCCAGTCGCAAGCGCTGGCGCTCCATGCATCCCTCTCGGGGGGCACAGAGCGCTG
CGCTTGCGGCGCGAGCAGCGGCAGCGTGAACTGTAAGGTGCCATCGCGGCGCTCAAGTCC
AAGTGGAGGAGCAGCGCTGCGCGCTGGAGGACGCTCGCCGCTCCCTAGCACACTTGGAAA
GCGCTGGTGCCGTGGATGAGGGCAAAGTACTGCTGAAGAGGCTCGGACAGGGGCAATCCT
GGGGGACAATCCTGGGGGGCTTCGTCTCCCCCCCTGGATCGCTTCACTCGGGGGGCTCAG
CCCTAAAAGTCAGGCAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001669A_C01 KCC001669A_c01
         (679 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB89438.1| B1066G12.12 [Oryza sativa (japonica cultivar-gro...    40  0.042
ref|XP_309523.1| ENSANGP00000008373 [Anopheles gambiae] gi|30178...    39  0.072
ref|NP_825610.1| hypothetical protein [Streptomyces avermitilis ...    37  0.36
ref|ZP_00091324.1| COG3267: Type II secretory pathway, component...    36  0.47
gb|AAK83845.1| glycine-rich protein GRP17 [Arabidopsis thaliana]       36  0.47

>dbj|BAB89438.1| B1066G12.12 [Oryza sativa (japonica cultivar-group)]
          Length = 249

 Score = 39.7 bits (91), Expect = 0.042
 Identities = 23/63 (36%), Positives = 28/63 (43%)
 Frame = -2

Query: 657 SPPSEAIQGGRRSPPGLSPRIAPVRASSAVLCPHPRHQRFPSVLGSGERPPARSAAPPLG 478
           +PP  A    R  P   +P     R  +A L PH RH+R P+V      PP R   PPL 
Sbjct: 134 TPPPAA----RPPPSAAAPAALSRRLRAAALSPHLRHRRPPTVSPRAPAPPVRPRTPPLA 189

Query: 477 LER 469
             R
Sbjct: 190 ATR 192

>ref|XP_309523.1| ENSANGP00000008373 [Anopheles gambiae] gi|30178492|gb|EAA05274.2|
            ENSANGP00000008373 [Anopheles gambiae str. PEST]
          Length = 1831

 Score = 38.9 bits (89), Expect = 0.072
 Identities = 30/108 (27%), Positives = 51/108 (46%), Gaps = 3/108 (2%)
 Frame = +2

Query: 182  GRVGADHH-LASIAPPSASLFDPAAAPAMAMIQEYLESLEDAVGQLEQQIAQANKQGDCV 358
            G +G D+  L +   PS+ L +P  APA+ +      S+ D V ++ ++     K     
Sbjct: 1203 GVIGPDYMTLGTGGHPSSELLNPVPAPALTVQPRAKVSISDEVFEMVKKTESKKKPSVEE 1262

Query: 359  QQLQSQALALHASLS--GGTERCACGASSGSVNCKVPSRRSSPSGGAA 496
            +  QS+   L   L+  GG +    G  SG +N  +P ++SS +G  A
Sbjct: 1263 EHEQSEDEELRNVLAGGGGVDPSLSGGGSGPIN--IPGKQSSTAGALA 1308

>ref|NP_825610.1| hypothetical protein [Streptomyces avermitilis MA-4680]
           gi|29608090|dbj|BAC72145.1| hypothetical protein
           [Streptomyces avermitilis MA-4680]
          Length = 756

 Score = 36.6 bits (83), Expect = 0.36
 Identities = 42/127 (33%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
 Frame = -2

Query: 612 GLSPRIAPVRASSAVLCPHPRHQRFPSVLGSGERPPARSAAPPLGLERRDGTLQFTLPLL 433
           GL     P R    VL P   H   PS    G+R PAR  A P G +RR+  L   +   
Sbjct: 469 GLDEAYEPFRIVRDVLAPLNAHCA-PSAPLPGQRGPARQPAEPEG-QRRNLRLLIGVRSS 526

Query: 432 APQAQRSVPPERDAWSASACDWSCCTQSPCLLA*AICCSSCPTAS--------SRDSRYS 277
            P A  + P  R +   +A      TQ P LL  A  C   PTAS        SRD   +
Sbjct: 527 RPPAHLAAP--RGSAPRTALTRPPVTQEPGLL--AALCEIFPTASVLRTDDTGSRDDIAA 582

Query: 276 WIIAIAG 256
           ++ A+ G
Sbjct: 583 YVEALIG 589

>ref|ZP_00091324.1| COG3267: Type II secretory pathway, component ExeA (predicted
           ATPase) [Azotobacter vinelandii]
          Length = 554

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 26/71 (36%), Positives = 30/71 (41%)
 Frame = +2

Query: 422 ACGASSGSVNCKVPSRRSSPSGGAALRAGGRSPLPSTLGKRWCRG*GQSTAEEARTGAIL 601
           ACG S GSV  +   RR +  GG+ L AGG   +     KR     G      A  G  L
Sbjct: 419 ACGFSPGSVRPRCAGRREAGPGGSRLPAGGCRVVRRAGRKRLVSLPGGHALRPAGAGHAL 478

Query: 602 GDNPGGLRLPP 634
           G    GLR  P
Sbjct: 479 GGQRPGLRACP 489

>gb|AAK83845.1| glycine-rich protein GRP17 [Arabidopsis thaliana]
          Length = 543

 Score = 36.2 bits (82), Expect = 0.47
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = +2

Query: 407 GTERCACGASSGSVNCKVPSRRSSPSGGAALRAGGRSPLPSTLGKRWCRG*GQSTAEEAR 586
           G ++C  G  SGS      S     SGG +     +S L + LGK+     G S +EE  
Sbjct: 297 GKKKCMSGGMSGSEEGMSGSEGGMSSGGGSKSKSKKSKLKAKLGKKKGMSGGMSGSEEGM 356

Query: 587 TGAILGDNPGG 619
           +G+  G + GG
Sbjct: 357 SGSEGGMSGGG 367



EST assemble image


clone accession position
1 CM077g05_r AV391751 1 592
2 LC039e08_r AV621677 177 679




Chlamydomonas reinhardtii
Kazusa DNA Research Institute