KCC001667A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001667A_C01 KCC001667A_c01
gcaccaGGAAGGGCAAGCCCTGAAGGGCTAAGGACAATAACTCTCTGTGCACAGGTTGCT
TGCACTCCGAGCTCAGCGGGAACTGGGCCAGCAGCAAAATGCTGCAGCAGACGAGCAGGA
CCGCTGCTCCTAGGCAAGGTGCCTTTGGCACCGGGCCTGCTCCTCGCGTCTCGCGGTGCC
GGCTTGCTGCACAGTGCCGAAGCGCGTCGAGCGGCCAGCAGCAGCAGCAGACCGCCGATG
AGCTGGCCGTGAGCCGTCGCCAGGCGCTGGCCTCGTCGCTGGCCATGGTTGCGGGTGCCG
TGCTGCTGCCGGTGGCCCCCGCCCTTGCAGAGGCCGAGGCGATCACCGCCGCATCCGTGT
CCGGCATCGGCGCTGGAGCGCTCCAGACGCTGACCGACCCCATCCTGGCCTACACCTACC
AGTACCCCATCGTCACCACCATGGGCAAGCCCCTGAACATGATCGTCAGCCGCACGCCTG
AGAAGTACAGCAGCGCGGCGCCACTCACCGCGGACGCCCGCCAGCGCATCGTCAGCGACG
TGTTTGACTTCAGAACTTGTGACGGCTCCATGATGTGGCCCGGCTCGGGGTGTCAGGGCC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001667A_C01 KCC001667A_c01
         (600 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB39129.1| P0686E09.22 [Oryza sativa (japonica cultivar-gro...    66  4e-10
ref|NP_196706.2| oxygen-evolving complex related protein [Arabid...    60  2e-08
pir||T48504 hypothetical protein F15N18.40 - Arabidopsis thalian...    59  5e-08
ref|ZP_00092792.1| COG3455: Uncharacterized protein conserved in...    50  3e-05
ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyc...    49  5e-05

>dbj|BAB39129.1| P0686E09.22 [Oryza sativa (japonica cultivar-group)]
          Length = 360

 Score = 65.9 bits (159), Expect = 4e-10
 Identities = 57/168 (33%), Positives = 84/168 (49%), Gaps = 22/168 (13%)
 Frame = +3

Query: 111 TSRTAAPRQG---AFGTGPAPRV------SRCRLA-AQCRSASSGQQQQQTADELAVSRR 260
           T  +  PRQ    A GTG   R       +R R A   C S+ S +      D LA+ RR
Sbjct: 18  TPSSLHPRQALRFAVGTGGGGRARATSTGTRRRAALVPCSSSVSARGPASGGDGLALERR 77

Query: 261 QALASSLAMVAGAVLLPVAPA----------LAEAEAITAASVSGIGAGA-LQTLTDPIL 407
           + L S L   +  ++LPV+            ++  +++ + +V+ +     + TL DPI 
Sbjct: 78  RLLLSGLVS-SFVLVLPVSVCTLYVLVSTLLMSHDDSVDSHAVAEMDEDVKMATLVDPIN 136

Query: 408 AYTYQYPIVTTMGK-PLNMIVSRTPEKYSSAAPLTADARQRIVSDVFD 548
           AY++ YP+     K     + SR PE+YSSAAPL+ DARQRIVS+  D
Sbjct: 137 AYSFLYPVELPGKKFTFKWVESRKPERYSSAAPLSPDARQRIVSERVD 184

>ref|NP_196706.2| oxygen-evolving complex related protein [Arabidopsis thaliana]
           gi|18252955|gb|AAL62404.1| putative protein [Arabidopsis
           thaliana] gi|21389651|gb|AAM48024.1| putative protein
           [Arabidopsis thaliana]
          Length = 297

 Score = 60.1 bits (144), Expect = 2e-08
 Identities = 47/142 (33%), Positives = 69/142 (48%), Gaps = 11/142 (7%)
 Frame = +3

Query: 156 PAPRVSRCR----------LAAQCRSASSGQQQQQTADELAVSRRQALASSLAMVAGAVL 305
           P  R+ RCR           + +   A SG   +  + E  +SRR  +   L+    ++ 
Sbjct: 11  PNSRLFRCRSSNISSKYHGASKELMIARSGVSTRSISSEKGLSRRDLVLIGLSSPL-SMF 69

Query: 306 LPVAPALAEAEAITAASVSGIGAGALQTLTDPILAYTYQYPIVTTMGKPL-NMIVSRTPE 482
           LP++  +  AE     S   +  G   T+ D I AY+Y YP+     K +   + SR PE
Sbjct: 70  LPLSSPVTHAEEDVKMSGEELKMG---TMVDDINAYSYAYPLDYPSEKLVFKWVESRKPE 126

Query: 483 KYSSAAPLTADARQRIVSDVFD 548
           +YSSAAPL+ DAR RIVS+  D
Sbjct: 127 RYSSAAPLSPDARLRIVSERVD 148

>pir||T48504 hypothetical protein F15N18.40 - Arabidopsis thaliana
           gi|7573402|emb|CAB87705.1| putative protein [Arabidopsis
           thaliana]
          Length = 319

 Score = 58.9 bits (141), Expect = 5e-08
 Identities = 42/116 (36%), Positives = 61/116 (52%), Gaps = 1/116 (0%)
 Frame = +3

Query: 204 ASSGQQQQQTADELAVSRRQALASSLAMVAGAVLLPVAPALAEAEAITAASVSGIGAGAL 383
           A SG   +  + E  +SRR  +   L+    ++ LP++  +  AE     S   +  G  
Sbjct: 53  ARSGVSTRSISSEKGLSRRDLVLIGLSSPL-SMFLPLSSPVTHAEEDVKMSGEELKMG-- 109

Query: 384 QTLTDPILAYTYQYPIVTTMGKPL-NMIVSRTPEKYSSAAPLTADARQRIVSDVFD 548
            T+ D I AY+Y YP+     K +   + SR PE+YSSAAPL+ DAR RIVS+  D
Sbjct: 110 -TMVDDINAYSYAYPLDYPSEKLVFKWVESRKPERYSSAAPLSPDARLRIVSERVD 164

>ref|ZP_00092792.1| COG3455: Uncharacterized protein conserved in bacteria [Azotobacter
           vinelandii]
          Length = 766

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 53/146 (36%), Positives = 58/146 (39%), Gaps = 14/146 (9%)
 Frame = +2

Query: 149 HRACSSRLAVPACCTVPKRVERPAAAADRR*AGREPSPGAGLVAGHGCGCRAAAGGPRPC 328
           H A +   A P    +P R  RPAAAA RR AGR P P AG       G   AAG  +P 
Sbjct: 84  HPAAALGHAPPGAARLPGRTARPAAAA-RRGAGRTPRP-AGTRRRGRSGRLPAAGAGQPL 141

Query: 329 RGRGDHRR--------IRVRHRRWSAPDADRPHPGLHLP-----VPHRHHHGQAPEHDRQ 469
            GR   R           VR    +      PHP    P     VP R   GQ    D  
Sbjct: 142 HGRDLARAPGGLRASLATVRRVARTGQRTGDPHPRAAPPPGVSRVPPRRAAGQLRAADGG 201

Query: 470 PHA*EVQQRGAT-HRGRPPAHRQRRV 544
                VQ+ GA  HR  P   RQRRV
Sbjct: 202 AAPRPVQRAGAARHRDCPAGARQRRV 227

 Score = 35.4 bits (80), Expect = 0.62
 Identities = 29/79 (36%), Positives = 32/79 (39%), Gaps = 4/79 (5%)
 Frame = -1

Query: 411 RPGWGRSASGALQRRCRTRMRR*SPRPLQGRGPPAAARHP----QPWPATRPAPGDGSRP 244
           RPG     +GA QRR     R   P    G  PP AAR P    +P  A R   G   RP
Sbjct: 64  RPG---PRAGAAQRRPGAAGRGVHPAAALGHAPPGAARLPGRTARPAAAARRGAGRTPRP 120

Query: 243 AHRRSAAAAGRSTRFGTVQ 187
           A  R    +GR    G  Q
Sbjct: 121 AGTRRRGRSGRLPAAGAGQ 139

 Score = 32.7 bits (73), Expect = 4.0
 Identities = 51/167 (30%), Positives = 64/167 (37%), Gaps = 10/167 (5%)
 Frame = +1

Query: 64  TPSSAGT---GPAAKCCSRRAGPLLLGK-VPLAPGLLLASRGAGLLHSAEARRAASSSSR 231
           TP  AGT   G + +  +  AG  L G+ +  APG L AS        A  RR A +  R
Sbjct: 117 TPRPAGTRRRGRSGRLPAAGAGQPLHGRDLARAPGGLRASL-------ATVRRVARTGQR 169

Query: 232 -----PPMSWP*AVARRWPRRWPW-LRVPCCCRWPPPLQRPRRSPPHPCPASALERSRR* 393
                P  + P  V+R  PRR    LR       P P+QR   +    CPA A +R  R 
Sbjct: 170 TGDPHPRAAPPPGVSRVPPRRAAGQLRAADGGAAPRPVQRAGAARHRDCPAGARQRRVRG 229

Query: 394 PTPSWPTPTSTPSSPPWASP*T*SSAARLRSTAARRHSPRTPASASS 534
             P   T                    RLR+    R + R PA A S
Sbjct: 230 ADPVAGT----------------DPRGRLRAGGTCRRARRNPARALS 260

>ref|NP_823399.1| putative protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680] gi|29605870|dbj|BAC69934.1| putative
           protoporphyrinogen oxidase [Streptomyces avermitilis
           MA-4680]
          Length = 474

 Score = 48.9 bits (115), Expect = 5e-05
 Identities = 50/158 (31%), Positives = 70/158 (43%), Gaps = 13/158 (8%)
 Frame = +1

Query: 106 SRRAGPLLLG------KVPLAPGLLLASRGAGLLHSAEARRAASSSSRPPM--SWP*AVA 261
           +++ GP+ +G      ++PLA    + +RG  ++  A   RAA S  R      W  AV 
Sbjct: 214 AQQTGPVFMGIEGGVGQLPLAVAESVRARGGEIVTGAPGDRAAQSRGRAGRVGGWSPAVV 273

Query: 262 RRWPRRWPWLRVPCCCRWPPPLQRPRRSPPHPC-PASALERSRR*PTPSWPTPTSTPSSP 438
              P  W     PC  R PP    PR  PP P  PAS+    R  P+   PT    P+SP
Sbjct: 274 CCTPTPWS---SPCPPRPPPSCCAPRHPPPRPSWPASSTRPWRWSPS---PTAAVGPASP 327

Query: 439 PWASP*T*SSAARLRSTAA----RRHSPRTPASASSAT 540
             A      +++ L ST A    RR  PR+ A + + T
Sbjct: 328 KAA------ASSCLPSTGAPSRHRRSPPRSGAGSRTRT 359

 Score = 39.3 bits (90), Expect = 0.043
 Identities = 48/164 (29%), Positives = 63/164 (38%), Gaps = 14/164 (8%)
 Frame = +1

Query: 1   APGRASPEGLRTITLCAQVACT-----PSSAGTG-----PAAKCCSRRAGPLLLGKVPLA 150
           A G ASP+   +  L +  A +     P  +G G     P   CC+RR+G          
Sbjct: 321 AVGPASPKAAASSCLPSTGAPSRHRRSPPRSGAGSRTRTPTCWCCARRSG---------- 370

Query: 151 PGLLLASRGAGLLHSAEARRAASSSSRPPMSWP*AVARRWPRRWPWLRVPCCCRWPPPLQ 330
            G       AG   ++   RA + + RP  +WP    RR P   P    P  CR  P   
Sbjct: 371 -GTARRRSSAGTTPASWTSRATTCARRP--AWP---PRRSPAASP--AGPTACRSTPSAT 422

Query: 331 R---PRRSPPHP-CPASALERSRR*PTPSWPTPTSTPSSPPWAS 450
               P  +   P CPAS     R   T S   P S   +PPW+S
Sbjct: 423 TRAWPASATTSPSCPASPSAARRT--TASASRPASPARTPPWSS 464

 Score = 31.6 bits (70), Expect = 8.9
 Identities = 31/95 (32%), Positives = 37/95 (38%), Gaps = 9/95 (9%)
 Frame = -1

Query: 411 RPGWGRSASGALQRRCRTRMRR*SPRPLQGRGP--PAAARHPQPWPATRPAPGDGSRPAH 238
           RP W  S+         TR  R SP P    GP  P AA       A+   P  G+   H
Sbjct: 301 RPSWPASS---------TRPWRWSPSPTAAVGPASPKAA-------ASSCLPSTGAPSRH 344

Query: 237 RRSAAAAGRSTRFGTV-------QQAGTARREEQA 154
           RRS   +G  +R  T        +  GTARR   A
Sbjct: 345 RRSPPRSGAGSRTRTPTCWCCARRSGGTARRRSSA 379



EST assemble image


clone accession position
1 CM077b12_r AV391794 1 600
2 LCL024f06_r AV627300 1 268
3 MXL091f02_r BP098327 55 419




Chlamydomonas reinhardtii
Kazusa DNA Research Institute