Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001664A_C01 KCC001664A_c01
(532 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAQ55461.1| putative NADH dehydrogenase subunit 3 precursor [... 280 6e-75
ref|ZP_00092788.1| COG3515: Uncharacterized protein conserved in... 47 2e-04
ref|ZP_00088474.1| COG0830: Urease accessory protein UreF [Azoto... 45 4e-04
pir||S19114 cgcr-1 protein - Chlamydomonas reinhardtii (fragment) 44 0.001
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 44 0.001
>gb|AAQ55461.1| putative NADH dehydrogenase subunit 3 precursor [Chlamydomonas
reinhardtii] gi|33943535|gb|AAQ55462.1| putative
NADH:ubiquinone oxidoreductase subunit 3 precursor
[Chlamydomonas reinhardtii]
Length = 279
Score = 280 bits (717), Expect = 6e-75
Identities = 142/145 (97%), Positives = 143/145 (97%)
Frame = +3
Query: 96 MALRSASGLSLGVGRLLPCLNAQLSRELQAFAAPSREEQQGDVSAKSPAQLQQYVREHAN 275
MALRSASGLSLGVGRLLPCLNAQLSRELQAFAAPSREEQQGDVSAKSPAQLQQYVREHAN
Sbjct: 1 MALRSASGLSLGVGRLLPCLNAQLSRELQAFAAPSREEQQGDVSAKSPAQLQQYVREHAN 60
Query: 276 AATCNKLGLGFAAQLLGTAAQQPSTSAVAAATAAKASCGPVLPARPTRRPLLPGMHRTPG 455
AATCNKLGLGFAAQLLGTAAQQPSTSAVAAATAAKASCGPVLPARPTRRPLLPGMHRTPG
Sbjct: 61 AATCNKLGLGFAAQLLGTAAQQPSTSAVAAATAAKASCGPVLPARPTRRPLLPGMHRTPG 120
Query: 456 FALTMQQSVRGXHAWSPAQRYFVEG 530
FAL MQQSVRG +AWSPAQRYFVEG
Sbjct: 121 FALPMQQSVRGYNAWSPAQRYFVEG 145
>ref|ZP_00092788.1| COG3515: Uncharacterized protein conserved in bacteria [Azotobacter
vinelandii]
Length = 499
Score = 47.0 bits (110), Expect = 2e-04
Identities = 44/127 (34%), Positives = 51/127 (39%), Gaps = 15/127 (11%)
Frame = -2
Query: 444 GACRVAGAGEWAGRAARGRSLP------------WQRLRQPPRRCWAAARPCRAAVPQSQ 301
GA V A AGRAARGR P +R R+ RRC C P
Sbjct: 2 GADAVRRARSAAGRAARGRDSPGRSIPGRDAPGQGRRTRRGRRRC-----GCAGTGPGGG 56
Query: 300 AQACCTSRRLRARARTAAAARG---S*QTHRPAAPRGWAQRKPAAPERAARSGKARAARL 130
QA + R R + A+G S T PA RG +R PA E AA A A RL
Sbjct: 57 GQAPGSGSRAEERREESRQAQGQPRSGATAHPALGRGLCRRPPARREPAAEDAVAAAGRL 116
Query: 129 QG*APKR 109
P+R
Sbjct: 117 PDRGPQR 123
>ref|ZP_00088474.1| COG0830: Urease accessory protein UreF [Azotobacter vinelandii]
Length = 377
Score = 45.4 bits (106), Expect = 4e-04
Identities = 39/108 (36%), Positives = 45/108 (41%), Gaps = 2/108 (1%)
Frame = -2
Query: 474 AASSARSRACGACRVAGAGEWAGRAARGRSLPWQRLRQPPRRCWAAARPCRAAVPQSQAQ 295
AA+ R G R GA RAA R L QRLR PRR PCR P + +
Sbjct: 36 AAAGRRRFPAGRRRPPGARARPSRAAAARRLR-QRLRTDPRRLPPGQPPCR---PADRRR 91
Query: 294 ACCTSRRLRARARTAAAARGS*QTH--RPAAPRGWAQRKPAAPERAAR 157
+RRLR AAA R PA R +R P+ P R R
Sbjct: 92 LVAPARRLRTGGHAAAARRPGRNRRGALPARARRLRRRPPSLPRRRGR 139
>pir||S19114 cgcr-1 protein - Chlamydomonas reinhardtii (fragment)
Length = 205
Score = 43.9 bits (102), Expect = 0.001
Identities = 52/160 (32%), Positives = 64/160 (39%), Gaps = 4/160 (2%)
Frame = -2
Query: 516 SAEPATRRXSHGPTAASSARSRACGACRVAGAGEWAGRAARGRSLPWQRLRQPPRRCW-- 343
SA PA + G AA R A A + A A E A AR +R P +
Sbjct: 29 SAAPAAAAQAAGGGAAGEGREEAAAA-QAAAAAEAAAAEARAAPAVAERTAAAPAKLLQP 87
Query: 342 --AAARPCRAAVPQSQAQACCTSRRLRARARTAAAARGS*QTHRPAAPRGWAQRKPAAPE 169
A A RAA Q+ AQA +A A+ AAA R + Q AA A + AA
Sbjct: 88 AAAQAAAERAAAAQAVAQAAAERAAAQAAAQ-AAAERAAAQAAAQAAAERAAAAQAAAQA 146
Query: 168 RAARSGKARAARLQG*APKRYVEPWRALANVCVFRGRGPG 49
A R+ RAA Q A + A A+ V R R G
Sbjct: 147 AAERAAAERAAAAQAAAER------AAAAHAAVARLRRTG 180
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 43.9 bits (102), Expect = 0.001
Identities = 55/177 (31%), Positives = 73/177 (41%), Gaps = 8/177 (4%)
Frame = -2
Query: 516 SAEPATRRXSHGPTAASSARSRACGACRVAGAGEWAGR--------AARGRSLPWQRLRQ 361
S PATR S T A RSR+ R R A RGRS R R
Sbjct: 465 SRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRS----RSRT 520
Query: 360 PPRRCWAAARPCRAAVPQSQAQACCTSRRLRARARTAAAARGS*QTHRPAAPRGWAQRKP 181
P RR P R +S++QA R R+R+RT A G ++ PA R P
Sbjct: 521 PTRRRSRTRSPVRRR-SRSRSQA---RRSGRSRSRTPARRSGRSRSRTPARRGRSRSRTP 576
Query: 180 AAPERAARSGKARAARLQG*APKRYVEPWRALANVCVFRGRGPGK*PATRNN*GPTA 10
A R+ARS ++R +G + R R+ + V RGR + P R G ++
Sbjct: 577 A--RRSARS-RSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSS 630
Score = 38.1 bits (87), Expect = 0.071
Identities = 23/72 (31%), Positives = 37/72 (50%)
Frame = +1
Query: 196 PAARSSRAMCLLRAPRSCSSTCASTQTPRRATSLGLALRHSCSARPRSSPAPPRWLPQPL 375
PA R R+ + S SS+ +S+ + ++S + S S+ SSP+P + PQ L
Sbjct: 2458 PAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQAL 2517
Query: 376 PRQAAAPCCPPG 411
P+ A+ PPG
Sbjct: 2518 PKPASPKKPPPG 2529
