KCC001663A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001663A_C01 KCC001663A_c01
aatatatcgctatgcacattgctatttagctaattttgcagaagcaaaactcatagttcg
tgcctttggttgaccgtgttTGCGAGCGAGCGCCTTTGACACCAAACTCGGGATCTTTGC
GCAATGGAGCGCCTAGGCGAACTTGCGGAAGGACTGCCAGGCGGGCAGAATGACGCGGAC
TCTGAGCCCGGCCCCGCGTAGGCGCCACCCTGCAGCCCCCGTGTGGCGCCCACTGCTCGG
CAGCGTAATTTCTCAACTACGACGCACGACGCAGCCCTTAACTTCCAACTCCTAGACTTG
GGGCGTCAGTACTTCGTGTGGGTTTCAGCGGTGGGCCCAAAGCTCGGCAGCCTGACGCTG
GCTATCAAGTCACCTGCGGACGCCGCGCCATCTGTGGCGTCGCTGCTGCCGGGCGCACCA
GCGGTTGGCGAGGGTCCCGCCATGGCGCAGCGGTTAGCCATACAACTGGGCAAGCCGGTC
GTGTGCTCCTGCAACATGCCGCCCAACTCGCCACTGCTTCAGGCGGTGGCAGAGCGGCGA
CTGCTGCAAGAGCTTCAACTGATGGAGCAGGAAGCGCAGGGGGCGGCAGGACAGGCGACG
GGCGGGGAGGTGGCGGCGACACCAGCCGCAGTGGTGGCGGCGGCGGGCACCGGGTGACGA
AAGCTTGGCAGGATGCGAGCTCAAGCTTGGAGTGGGGTGGGATGTTTGGTCTGTATATGG
CCAGGAGCACCTAGTGTGCACATCCTACTCCAGTGTTGGGTGTGCGCGCCGACAAAGTCG
TGGGGTGCTCCTTGCGGTGGTTGCCTGTTGCGGTATGTCAGCCGCGAAGGCAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001663A_C01 KCC001663A_c01
         (833 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_564522.1| expressed protein [Arabidopsis thaliana] gi|179...    70  4e-11
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA...    57  4e-07
gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]              56  8e-07
dbj|BAB02467.1| contains similarity to late embryogenesis abunda...    55  2e-06
ref|NP_188574.2| late embryogenesis abundant protein -related [A...    55  2e-06

>ref|NP_564522.1| expressed protein [Arabidopsis thaliana] gi|17979289|gb|AAL49870.1|
           unknown protein [Arabidopsis thaliana]
           gi|21555820|gb|AAM63941.1| unknown [Arabidopsis
           thaliana] gi|22136760|gb|AAM91699.1| unknown protein
           [Arabidopsis thaliana]
          Length = 153

 Score = 70.1 bits (170), Expect = 4e-11
 Identities = 36/102 (35%), Positives = 59/102 (57%)
 Frame = +1

Query: 250 FSTTTHDAALNFQLLDLGRQYFVWVSAVGPKLGSLTLAIKSPADAAPSVASLLPGAPAVG 429
           F+    D  + FQ++ L +Q +VWV     K GSL  A  +      SV S+L G  +  
Sbjct: 39  FTEVFDDVTIQFQIIRLAKQIYVWVGCNSAKFGSLYAAASTRPSNTVSVTSVL-GGTSDN 97

Query: 430 EGPAMAQRLAIQLGKPVVCSCNMPPNSPLLQAVAERRLLQEL 555
            G  +A+RL ++ G  ++ +CN+P N+PLL+A AE+ L+++L
Sbjct: 98  TGSGIARRLVLKTGLNIILACNIPKNNPLLEAKAEKVLIRKL 139

>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
           extensin [Volvox carteri]
          Length = 464

 Score = 57.0 bits (136), Expect = 4e-07
 Identities = 47/126 (37%), Positives = 53/126 (41%), Gaps = 10/126 (7%)
 Frame = -2

Query: 646 PPPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRSTRP--- 476
           PPPPP    SPPPPR SP  PPP+ P PS        + PPP +  S      S  P   
Sbjct: 312 PPPPPRPSPSPPPPRSSPSPPPPSPPPPSPPPPRPSPSPPPPRSSPSPPPPVVSPPPPPP 371

Query: 475 -ACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PA-SGCRALGPPL-----KPT 317
            A P     ++P   PR P   P  + P  A        PA S  RA GPPL      P 
Sbjct: 372 RASPPPPPASSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSRSRAGGPPLGTRPPPPP 431

Query: 316 RSTDAP 299
              DAP
Sbjct: 432 PEDDAP 437

 Score = 50.1 bits (118), Expect = 5e-05
 Identities = 48/150 (32%), Positives = 59/150 (39%), Gaps = 12/150 (8%)
 Frame = -2

Query: 709 PNIPPHSKLELASCQAFVTRCPPPPPLRLVSPPPPRP--SPVLPPPALPAPSVEALAAVA 536
           P +PP     +AS        PPPPP    SPPPP+P  SP  PPP  P+PS     +  
Sbjct: 276 PRVPPSPPPPVASPP------PPPPPRVSPSPPPPQPVSSPPPPPPPRPSPSPPPPRSSP 329

Query: 535 ALPPPEAVASWAACCR----------STRPACPVVWLTAAPWRDPRQPLVRPAAATPQMA 386
           + PPP          R          S  P  PVV   + P   PR     P A++P   
Sbjct: 330 SPPPPSPPPPSPPPPRPSPSPPPPRSSPSPPPPVV---SPPPPPPRASPPPPPASSPPPP 386

Query: 385 RRPQVT**PASGCRALGPPLKPTRSTDAPS 296
            RP     P S      PP   T + + PS
Sbjct: 387 PRPPPPSPPPS------PPPPATAAANPPS 410

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 23/46 (50%), Positives = 24/46 (52%)
 Frame = -2

Query: 652 RCPPPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAALPPPEA 515
           R  PPPP     PPPPRP P  PPP+ P P     A  AA PP  A
Sbjct: 372 RASPPPPPASSPPPPPRPPPPSPPPSPPPP-----ATAAANPPSPA 412

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 21/42 (50%), Positives = 24/42 (57%)
 Frame = -2

Query: 646 PPPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAALPPP 521
           PPPPP    SPPPP  SP  PPP   +PS      V++ PPP
Sbjct: 272 PPPPPRVPPSPPPPVASPPPPPPPRVSPSPPPPQPVSSPPPP 313

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 40/132 (30%), Positives = 47/132 (35%), Gaps = 13/132 (9%)
 Frame = -2

Query: 655 TRCPPPPPLRLVSPPPPRPSPVLPPPAL----------PAPSVEA---LAAVAALPPPEA 515
           T  PPPPP    SPPPP      PPPA           P+P + A   L   +  PPP  
Sbjct: 219 TPSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRITSPSPVLTASPPLPKTSPPPPPRV 278

Query: 514 VASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALG 335
             S      S  P  P      +P   P QP+  P    P    RP  +  P     +  
Sbjct: 279 PPSPPPPVASPPPPPPP---RVSPSPPPPQPVSSPPPPPPP---RPSPSPPPPRSSPSPP 332

Query: 334 PPLKPTRSTDAP 299
           PP  P  S   P
Sbjct: 333 PPSPPPPSPPPP 344

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 41/155 (26%), Positives = 53/155 (33%), Gaps = 17/155 (10%)
 Frame = -2

Query: 712 RPNIPPHSKLELASCQAFVTRCPPP-------------PPLRLVSPPPPRPSPVLPPPAL 572
           R +  P     ++S     TR PPP             PPL   SPPPP   P  PPP +
Sbjct: 227 RVSTSPPPPARVSSSPPPATRSPPPRRITSPSPVLTASPPLPKTSPPPPPRVPPSPPPPV 286

Query: 571 PAPSVEALAAVAALPPPEAVASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQ 392
            +P       V+  PPP    S        RP+         P   P  P   P   +P 
Sbjct: 287 ASPPPPPPPRVSPSPPPPQPVSSPPPPPPPRPSPS----PPPPRSSPSPPPPSPPPPSPP 342

Query: 391 MAR----RPQVT**PASGCRALGPPLKPTRSTDAP 299
             R     P     P+     + PP  P R++  P
Sbjct: 343 PPRPSPSPPPPRSSPSPPPPVVSPPPPPPRASPPP 377

>gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]
          Length = 1016

 Score = 55.8 bits (133), Expect = 8e-07
 Identities = 42/121 (34%), Positives = 56/121 (45%), Gaps = 6/121 (4%)
 Frame = -2

Query: 643 PPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRSTRPACPV 464
           PPPP  + SPPPP  SP  PPPA  A     + +    PPP  VAS     +S  P  PV
Sbjct: 561 PPPPAPVASPPPPMKSP--PPPARVASPPPLMKSP---PPPAPVASPPQPLKSPPP--PV 613

Query: 463 VWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLK------PTRSTDA 302
           +WL+    + P  P+  P A+ P   + P     P +   +  PP+K      P +ST  
Sbjct: 614 LWLSTPSVKSPPPPV--PVASPPPPVKSPP----PLAPVSSPSPPVKLPPLPAPGKSTPP 667

Query: 301 P 299
           P
Sbjct: 668 P 668

 Score = 49.7 bits (117), Expect = 6e-05
 Identities = 45/129 (34%), Positives = 58/129 (44%), Gaps = 14/129 (10%)
 Frame = -2

Query: 643 PPPPLRLVSPP-----PPRPSPVLPPP---ALPAPSVEALA--AVAALPPPEAVASWAAC 494
           PPPP R+ SPP     PP P+PV  PP     P P V  L+  +V + PPP  VAS    
Sbjct: 577 PPPPARVASPPPLMKSPPPPAPVASPPQPLKSPPPPVLWLSTPSVKSPPPPVPVASPPPP 636

Query: 493 CRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLK--- 323
            +S  P  PV    + P + P  PL  P  +TP           P +  ++  PP K   
Sbjct: 637 VKSPPPLAPVS-SPSPPVKLP--PLPAPGKSTPPPEEEKPT---PPTPVKSSPPPEKSLP 690

Query: 322 -PTRSTDAP 299
            PT +T  P
Sbjct: 691 PPTLTTSPP 699

 Score = 49.7 bits (117), Expect = 6e-05
 Identities = 44/136 (32%), Positives = 57/136 (41%)
 Frame = -2

Query: 703  IPPHSKLELASCQAFVTRCPPPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAALPP 524
            +PP + + L   +  V   PPP P+   SPPPP  SP   PP  PAP       V + PP
Sbjct: 872  LPPPAPVSLPPPE--VKSSPPPAPIS--SPPPPAKSP---PP--PAPMSSLPPPVKSPPP 922

Query: 523  PEAVASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCR 344
            P  V+S     +S  P  P+     AP + P  P   P ++ P     P VT        
Sbjct: 923  PAPVSSPPPPMKSPPPPAPISSPPPAPVKPPSLPPPAPVSSPP-----PAVT-------- 969

Query: 343  ALGPPLKPTRSTDAPS 296
               PP K   ST  P+
Sbjct: 970  -SAPPKKEEDSTAPPA 984

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 39/124 (31%), Positives = 49/124 (39%), Gaps = 7/124 (5%)
 Frame = -2

Query: 646 PPPPPLR---LVSPPPPRPSPVLPPPALPAPSVEALAAVAALP----PPEAVASWAACCR 488
           P P P+R   L SPP     P  P PA   P     A+  A P    PP A +  A   +
Sbjct: 460 PAPAPMRMPTLRSPPADEYIPTPPVPAKSPPGTSPPASRGAPPLQAQPPAASSPPATPVK 519

Query: 487 STRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKPTRST 308
           S+ P   VV    A    P  P+  P    P  + +PQV   P     A  PP  P +S 
Sbjct: 520 SSPPPAAVVLPPPAKTPSPPAPVASPPPEAPVSSPQPQVKSPPPPAPVASPPP--PMKSP 577

Query: 307 DAPS 296
             P+
Sbjct: 578 PPPA 581

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 1/107 (0%)
 Frame = -2

Query: 640  PPPLRLVSPPP-PRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRSTRPACPV 464
            PPP  + SPPP P+ SP L P + P P VE  +     PPP  V+S     +   P  PV
Sbjct: 825  PPPAPVSSPPPTPKSSPPLAPVSSP-PQVEKTS-----PPPAPVSSPPPTPKPLPPPAPV 878

Query: 463  VWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLK 323
               +  P      P   P ++ P  A+ P     P +   +L PP+K
Sbjct: 879  ---SLPPPEVKSSPPPAPISSPPPPAKSPP----PPAPMSSLPPPVK 918

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 8/100 (8%)
 Frame = -2

Query: 658 VTRCPPP-----PPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAALP---PPEAVASW 503
           +T  PPP     PP     PPPP P   LPPP+  +P  E +++    P    P A  S 
Sbjct: 694 LTTSPPPQEKPTPPSTPSKPPPPSPVETLPPPSKSSPPEEPVSSPPQAPKSSSPPAPVSS 753

Query: 502 AACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMAR 383
               +S+ P  P    ++ P      P + P ++ PQ+ +
Sbjct: 754 PPPLKSSPPPVPE---SSPPPTPKSSPPLAPVSSPPQVEK 790

 Score = 42.0 bits (97), Expect = 0.012
 Identities = 29/89 (32%), Positives = 42/89 (46%), Gaps = 1/89 (1%)
 Frame = -2

Query: 640  PPPLRLVSPPP-PRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRSTRPACPV 464
            PPP  + SPPP P+P P   P +LP P V+      + PPP  ++S     +S  P  P+
Sbjct: 857  PPPAPVSSPPPTPKPLPPPAPVSLPPPEVK------SSPPPAPISSPPPPAKSPPPPAPM 910

Query: 463  VWLTAAPWRDPRQPLVRPAAATPQMARRP 377
              L   P + P  P   P ++ P   + P
Sbjct: 911  SSL-PPPVKSPPPP--APVSSPPPPMKSP 936

 Score = 41.2 bits (95), Expect = 0.021
 Identities = 34/105 (32%), Positives = 43/105 (40%)
 Frame = -2

Query: 709  PNIPPHSKLELASCQAFVTRCPPPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAAL 530
            P   P     ++S    V   PPP P+   SPPPP  SP  PPPA  +    A     +L
Sbjct: 900  PAKSPPPPAPMSSLPPPVKSPPPPAPVS--SPPPPMKSP--PPPAPISSPPPAPVKPPSL 955

Query: 529  PPPEAVASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATP 395
            PPP  V+S            P   +T+AP +        PA A P
Sbjct: 956  PPPAPVSS------------PPPAVTSAPPKKEEDSTAPPAEALP 988

 Score = 40.4 bits (93), Expect = 0.036
 Identities = 38/128 (29%), Positives = 47/128 (36%), Gaps = 11/128 (8%)
 Frame = -2

Query: 646  PPP-----PPLRLVSPPP------PRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWA 500
            PPP     PPL  VS PP      P P+PV  PP  P P          LPPP  V+   
Sbjct: 833  PPPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKP----------LPPPAPVSLPP 882

Query: 499  ACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKP 320
               +S+ P  P+          P  P   P    P  +  P V   P     +  PP  P
Sbjct: 883  PEVKSSPPPAPI--------SSPPPPAKSPPPPAPMSSLPPPVKSPPPPAPVSSPPP--P 932

Query: 319  TRSTDAPS 296
             +S   P+
Sbjct: 933  MKSPPPPA 940

 Score = 40.4 bits (93), Expect = 0.036
 Identities = 29/83 (34%), Positives = 41/83 (48%), Gaps = 1/83 (1%)
 Frame = -2

Query: 640  PPPLRLVSPPP-PRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRSTRPACPV 464
            PPP  + SPPP P+ SP L P + P P VE  +     PPP  V+S     +S+ P  PV
Sbjct: 793  PPPAPVSSPPPTPKSSPPLAPVSSP-PQVEKTS-----PPPAPVSSPPPTPKSSPPLAPV 846

Query: 463  VWLTAAPWRDPRQPLVRPAAATP 395
               ++ P  +   P   P ++ P
Sbjct: 847  ---SSPPQVEKTSPPPAPVSSPP 866

 Score = 39.3 bits (90), Expect = 0.080
 Identities = 33/111 (29%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
 Frame = -2

Query: 643 PPPPLRLVSPPPP-RPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRSTRPACP 467
           PPPP+ + SPPPP +  P L P + P+P V+       LPP  A           +P  P
Sbjct: 624 PPPPVPVASPPPPVKSPPPLAPVSSPSPPVK-------LPPLPAPGKSTPPPEEEKPTPP 676

Query: 466 VVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT---**PASGCRALGPPLK 323
               ++ P      P     +  PQ    P  T     P S    L PP K
Sbjct: 677 TPVKSSPPPEKSLPPPTLTTSPPPQEKPTPPSTPSKPPPPSPVETLPPPSK 727

 Score = 35.0 bits (79), Expect = 1.5
 Identities = 24/55 (43%), Positives = 29/55 (52%), Gaps = 14/55 (25%)
 Frame = -2

Query: 643  PPPPLRLVSPPP--------PRPSPV-LPPPAL----PAPSVEALAAVA-ALPPP 521
            PPPP  + SPPP        P P+PV  PPPA+    P    ++ A  A ALPPP
Sbjct: 936  PPPPAPISSPPPAPVKPPSLPPPAPVSSPPPAVTSAPPKKEEDSTAPPAEALPPP 990

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 26/93 (27%), Positives = 42/93 (44%), Gaps = 10/93 (10%)
 Frame = -2

Query: 643  PPPPLRLVSPPPPRPSPVLPPPALPAPSVEALAAVAAL----------PPPEAVASWAAC 494
            PP P+   SPPP + SP   P + P P+ ++   +A +          PPP  V+S    
Sbjct: 747  PPAPVS--SPPPLKSSPPPVPESSPPPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPT 804

Query: 493  CRSTRPACPVVWLTAAPWRDPRQPLVRPAAATP 395
             +S+ P  PV   ++ P  +   P   P ++ P
Sbjct: 805  PKSSPPLAPV---SSPPQVEKTSPPPAPVSSPP 834

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 36/117 (30%), Positives = 45/117 (37%), Gaps = 6/117 (5%)
 Frame = -2

Query: 643  PPPPLRLVSPPPPRPSPVLPPPAL---PAPSVEAL--AAVAALPPPEAVASWAACCRSTR 479
            P PP  + S PPP  S  LPPP L   P P  +    +  +  PPP  V +     +S+ 
Sbjct: 673  PTPPTPVKSSPPPEKS--LPPPTLTTSPPPQEKPTPPSTPSKPPPPSPVETLPPPSKSSP 730

Query: 478  PACPVVWLTAAP-WRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKPTRS 311
            P  PV     AP    P  P+  P    P  +  P V            PPL P  S
Sbjct: 731  PEEPVSSPPQAPKSSSPPAPVSSP---PPLKSSPPPVPESSPPPTPKSSPPLAPVSS 784

 Score = 33.1 bits (74), Expect = 5.8
 Identities = 32/111 (28%), Positives = 45/111 (39%), Gaps = 10/111 (9%)
 Frame = -2

Query: 697 PHSKLELASCQAFVTRCPPPPPLRLVSPP---PPRPSP--VLPP-----PALPAPSVEAL 548
           P   + +AS    V   PP  P+   SPP   PP P+P    PP     P  P P   + 
Sbjct: 624 PPPPVPVASPPPPVKSPPPLAPVSSPSPPVKLPPLPAPGKSTPPPEEEKPTPPTPVKSSP 683

Query: 547 AAVAALPPPEAVASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATP 395
               +LPPP    S     + T P+ P    +  P   P + L  P+ ++P
Sbjct: 684 PPEKSLPPPTLTTSPPPQEKPTPPSTP----SKPPPPSPVETLPPPSKSSP 730

>dbj|BAB02467.1| contains similarity to late embryogenesis abundant
           protein~gene_id:MLD14.16 [Arabidopsis thaliana]
          Length = 631

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 40/123 (32%), Positives = 48/123 (38%), Gaps = 6/123 (4%)
 Frame = -2

Query: 643 PPPPLRLVSPPPPRPS------PVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRST 482
           PP P+  VSPPPP PS      PV PPP  P PSV +     + PPP    S  +     
Sbjct: 146 PPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPV 205

Query: 481 RPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKPTRSTDA 302
            P  P    T  P      P V P   TP  +        P     +  PP+ P   T  
Sbjct: 206 SPPPP----TPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPT 261

Query: 301 PSL 293
           PS+
Sbjct: 262 PSV 264

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 38/123 (30%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
 Frame = -2

Query: 646 PPPPPLRL-------VSPPPPRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCR 488
           PPP P          VSPPPP P+P +P P  P P+    +    + PP    +      
Sbjct: 208 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPT------ 261

Query: 487 STRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKPTRST 308
            + P+ P V  T      P  P V P   TP +   P VT  P +      PP  PT S 
Sbjct: 262 PSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPT------PPSVPTPSG 315

Query: 307 DAP 299
             P
Sbjct: 316 SPP 318

 Score = 46.6 bits (109), Expect = 5e-04
 Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
 Frame = -2

Query: 646 PPPPPLRL-------VSPPPPRPS--------PVLPPPALPAPSVEALAAVAALPPPEAV 512
           PPP P          VSPPPP P+        PV PPP  P PSV +     + PPP   
Sbjct: 172 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPT 231

Query: 511 ASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGP 332
            S      S  P  P   + + P   P  P   P   TP +   P VT  P +      P
Sbjct: 232 PS----VPSPTPPVPTDPMPSPP--PPVSP--PPPTPTPSVPSPPDVTPTPPTPSVPSPP 283

Query: 331 PLKPTRST 308
            + PT  T
Sbjct: 284 DVTPTPPT 291

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 40/147 (27%), Positives = 50/147 (33%), Gaps = 12/147 (8%)
 Frame = -2

Query: 700 PPHSKLELASCQAFVTRCPPPPPLRL------------VSPPPPRPSPVLPPPALPAPSV 557
           P    +E ASC+     C PP P                +PP P P    PP   P PSV
Sbjct: 109 PDSCHVECASCKPI---CGPPSPGDDGGGDDSGGDDGGYTPPAPVPPVSPPP---PTPSV 162

Query: 556 EALAAVAALPPPEAVASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRP 377
            +     + PPP    S  +    T P  P       P   P  P   P  + P     P
Sbjct: 163 PSPTPPVSPPPPTPTPSVPS---PTPPVSP-----PPPTPTPSVPSPTPPVSPPPPTPTP 214

Query: 376 QVT**PASGCRALGPPLKPTRSTDAPS 296
            V   P+       PP  PT S  +P+
Sbjct: 215 SV---PSPTPPVSPPPPTPTPSVPSPT 238

>ref|NP_188574.2| late embryogenesis abundant protein -related [Arabidopsis thaliana]
          Length = 559

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 40/123 (32%), Positives = 48/123 (38%), Gaps = 6/123 (4%)
 Frame = -2

Query: 643 PPPPLRLVSPPPPRPS------PVLPPPALPAPSVEALAAVAALPPPEAVASWAACCRST 482
           PP P+  VSPPPP PS      PV PPP  P PSV +     + PPP    S  +     
Sbjct: 74  PPAPVPPVSPPPPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPV 133

Query: 481 RPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKPTRSTDA 302
            P  P    T  P      P V P   TP  +        P     +  PP+ P   T  
Sbjct: 134 SPPPP----TPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPT 189

Query: 301 PSL 293
           PS+
Sbjct: 190 PSV 192

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 38/123 (30%), Positives = 48/123 (38%), Gaps = 7/123 (5%)
 Frame = -2

Query: 646 PPPPPLRL-------VSPPPPRPSPVLPPPALPAPSVEALAAVAALPPPEAVASWAACCR 488
           PPP P          VSPPPP P+P +P P  P P+    +    + PP    +      
Sbjct: 136 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVPTDPMPSPPPPVSPPPPTPT------ 189

Query: 487 STRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGPPLKPTRST 308
            + P+ P V  T      P  P V P   TP +   P VT  P +      PP  PT S 
Sbjct: 190 PSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPT------PPSVPTPSG 243

Query: 307 DAP 299
             P
Sbjct: 244 SPP 246

 Score = 46.6 bits (109), Expect = 5e-04
 Identities = 41/128 (32%), Positives = 49/128 (38%), Gaps = 15/128 (11%)
 Frame = -2

Query: 646 PPPPPLRL-------VSPPPPRPS--------PVLPPPALPAPSVEALAAVAALPPPEAV 512
           PPP P          VSPPPP P+        PV PPP  P PSV +     + PPP   
Sbjct: 100 PPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPTPSVPSPTPPVSPPPPTPT 159

Query: 511 ASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRPQVT**PASGCRALGP 332
            S      S  P  P   + + P   P  P   P   TP +   P VT  P +      P
Sbjct: 160 PS----VPSPTPPVPTDPMPSPP--PPVSP--PPPTPTPSVPSPPDVTPTPPTPSVPSPP 211

Query: 331 PLKPTRST 308
            + PT  T
Sbjct: 212 DVTPTPPT 219

 Score = 34.3 bits (77), Expect = 2.6
 Identities = 40/147 (27%), Positives = 50/147 (33%), Gaps = 12/147 (8%)
 Frame = -2

Query: 700 PPHSKLELASCQAFVTRCPPPPPLRL------------VSPPPPRPSPVLPPPALPAPSV 557
           P    +E ASC+     C PP P                +PP P P    PP   P PSV
Sbjct: 37  PDSCHVECASCKPI---CGPPSPGDDGGGDDSGGDDGGYTPPAPVPPVSPPP---PTPSV 90

Query: 556 EALAAVAALPPPEAVASWAACCRSTRPACPVVWLTAAPWRDPRQPLVRPAAATPQMARRP 377
            +     + PPP    S  +    T P  P       P   P  P   P  + P     P
Sbjct: 91  PSPTPPVSPPPPTPTPSVPS---PTPPVSP-----PPPTPTPSVPSPTPPVSPPPPTPTP 142

Query: 376 QVT**PASGCRALGPPLKPTRSTDAPS 296
            V   P+       PP  PT S  +P+
Sbjct: 143 SV---PSPTPPVSPPPPTPTPSVPSPT 166



EST assemble image


clone accession position
1 LC052e06_r AV622654 1 499
2 CM076c09_r AV391683 264 833




Chlamydomonas reinhardtii
Kazusa DNA Research Institute