KCC001662A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001662A_C01 KCC001662A_c01
gcaccaggcgggatgaggcgagcggcaccagccaggtcatctcggaggtgctgctgtacg
gcgaggtcgtgctgcgctacGTGTCGGGCTCCTTCCAGGGCCCCTTCCTGGCCGGCTACA
CGCCCGTCACAGACTCGGCCGTGACCTCCTTCGGCCTGCAACGTCTGGACCACGCGGTGG
GCAACACCCATGACCTGATCAAGGCCGTGGAGTACATCACCGGCTTCACAGGTTTCCACG
AGTTCTCAGAGTTTGTTGCGGAGGACGTGGGCACTGTGGACAGCGGCCTGAACAGCATGG
TGCTGGCCTCCAACAACGAGGCAGTGCTGCTGCCTGTGAACGAGCCCACCTTTGGCACGC
CGCGCAAGAGCCAAATCCAGACCTACCTGGAGCAGAACGAGGGGCCGGGGCTGCAGCACC
TGGCGCTGCTCAGCAACGACATCTTCACCACCCTGCGGGAGATGCGCGCGCGCAGCGAGC
TGGGTGGCTTCGAGTTCATGCCCACGGGCAAATGCCAAGTACTACAAAGACATGTACGCC
CGCATCGGCGACTCGCTCACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001662A_C01 KCC001662A_c01
         (561 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase (4HPPD)...   204  2e-51
gb|AAC62457.1| p-hydroxyphenylpyruvate dioxygenase [Arabidopsis ...   199  2e-50
sp|P93836|HPPD_ARATH 4-hydroxyphenylpyruvate dioxygenase (4HPPD)...   199  2e-50
ref|NP_172144.2| 4-hydroxyphenylpyruvate dioxygenase (HPD) [Arab...   199  2e-50
gb|AAM96960.1| 4-hydroxyphenylpyruvate dioxygenase HPD [Arabidop...   199  3e-50

>sp|O23920|HPPD_DAUCA 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
           gi|7459542|pir||T14353 probable 4-hydroxyphenylpyruvate
           dioxygenase (EC 1.13.11.27) - carrot
           gi|2231615|gb|AAC49815.1| 4-hydroxyphenylpyruvate
           dioxygenase [Daucus carota]
          Length = 442

 Score =  204 bits (518), Expect(2) = 2e-51
 Identities = 106/160 (66%), Positives = 127/160 (79%), Gaps = 4/160 (2%)
 Frame = +3

Query: 39  ISEVLLYGEVVLRYVS-GSFQGPFLAGYTPVTDSAV---TSFGLQRLDHAVGNTHDLIKA 206
           ++EV LYG+VVLR+VS G  +G FL G+  V  +A      +G++RLDHAVGN  +L   
Sbjct: 171 LAEVELYGDVVLRFVSFGREEGLFLPGFEAVEGTASFPDLDYGIRRLDHAVGNVTELGPV 230

Query: 207 VEYITGFTGFHEFSEFVAEDVGTVDSGLNSMVLASNNEAVLLPVNEPTFGTPRKSQIQTY 386
           VEYI GFTGFHEF+EF AEDVGT++SGLNS+VLA+N E VLLP+NEP +GT RKSQIQTY
Sbjct: 231 VEYIKGFTGFHEFAEFTAEDVGTLESGLNSVVLANNEEMVLLPLNEPVYGTKRKSQIQTY 290

Query: 387 LEQNEGPGLQHLALLSNDIFTTLREMRARSELGGFEFMPT 506
           LE NEG G+QHLAL+S DIF TLREMR RS LGGFEFMP+
Sbjct: 291 LEHNEGAGVQHLALVSEDIFRTLREMRKRSCLGGFEFMPS 330

 Score = 20.8 bits (42), Expect(2) = 2e-51
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 502 PRANAKYYKDMYARIGDSLT 561
           P     YYK++  R+GD L+
Sbjct: 329 PSPPPTYYKNLKNRVGDVLS 348

>gb|AAC62457.1| p-hydroxyphenylpyruvate dioxygenase [Arabidopsis thaliana]
          Length = 419

 Score =  199 bits (507), Expect = 2e-50
 Identities = 102/162 (62%), Positives = 125/162 (76%), Gaps = 6/162 (3%)
 Frame = +3

Query: 39  ISEVLLYGEVVLRYVS----GSFQGPFLAGYTPVTDSAV--TSFGLQRLDHAVGNTHDLI 200
           I+EV LYG+VVLRYVS     + +  FL G+  V D++     +G++RLDHAVGN  +L 
Sbjct: 176 IAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELG 235

Query: 201 KAVEYITGFTGFHEFSEFVAEDVGTVDSGLNSMVLASNNEAVLLPVNEPTFGTPRKSQIQ 380
            A+ Y+ GFTGFH+F+EF A+DVGT +SGLNS VLASN+E VLLP+NEP  GT RKSQIQ
Sbjct: 236 PALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQ 295

Query: 381 TYLEQNEGPGLQHLALLSNDIFTTLREMRARSELGGFEFMPT 506
           TYLE NEG GLQHLAL+S DIF TLREMR RS +GGF+FMP+
Sbjct: 296 TYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPS 337

>sp|P93836|HPPD_ARATH 4-hydroxyphenylpyruvate dioxygenase (4HPPD) (HPD) (HPPDase)
           gi|11280562|pir||T51585 4-hydroxyphenylpyruvate
           dioxygenase (EC 1.13.11.27) [validated] - Arabidopsis
           thaliana gi|2145039|gb|AAB58404.1|
           p-hydroxyphenylpyruvate dioxygenase [Arabidopsis
           thaliana] gi|2392518|gb|AAB70025.1|
           p-hydroxyphenylpyruvate dioxygenase [Arabidopsis
           thaliana] gi|3098559|gb|AAC15697.1|
           4-hydroxyphenylpyruvate dioxygenase [Arabidopsis
           thaliana] gi|16226618|gb|AAL16215.1|AF428446_1
           At1g06570/F12K11_12 [Arabidopsis thaliana]
           gi|18252207|gb|AAL61936.1| 4-hydroxyphenylpyruvate
           dioxygenase (HPD) [Arabidopsis thaliana]
           gi|22136134|gb|AAM91145.1| 4-hydroxyphenylpyruvate
           dioxygenase (HPD) [Arabidopsis thaliana]
          Length = 445

 Score =  199 bits (507), Expect = 2e-50
 Identities = 102/162 (62%), Positives = 125/162 (76%), Gaps = 6/162 (3%)
 Frame = +3

Query: 39  ISEVLLYGEVVLRYVS----GSFQGPFLAGYTPVTDSAV--TSFGLQRLDHAVGNTHDLI 200
           I+EV LYG+VVLRYVS     + +  FL G+  V D++     +G++RLDHAVGN  +L 
Sbjct: 176 IAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELG 235

Query: 201 KAVEYITGFTGFHEFSEFVAEDVGTVDSGLNSMVLASNNEAVLLPVNEPTFGTPRKSQIQ 380
            A+ Y+ GFTGFH+F+EF A+DVGT +SGLNS VLASN+E VLLP+NEP  GT RKSQIQ
Sbjct: 236 PALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQ 295

Query: 381 TYLEQNEGPGLQHLALLSNDIFTTLREMRARSELGGFEFMPT 506
           TYLE NEG GLQHLAL+S DIF TLREMR RS +GGF+FMP+
Sbjct: 296 TYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPS 337

>ref|NP_172144.2| 4-hydroxyphenylpyruvate dioxygenase (HPD) [Arabidopsis thaliana]
           gi|25335815|pir||B86201 protein F12K11.9 [imported] -
           Arabidopsis thaliana gi|6692679|gb|AAF24813.1|AC007592_6
           F12K11.9 [Arabidopsis thaliana]
          Length = 473

 Score =  199 bits (507), Expect = 2e-50
 Identities = 102/162 (62%), Positives = 125/162 (76%), Gaps = 6/162 (3%)
 Frame = +3

Query: 39  ISEVLLYGEVVLRYVS----GSFQGPFLAGYTPVTDSAV--TSFGLQRLDHAVGNTHDLI 200
           I+EV LYG+VVLRYVS     + +  FL G+  V D++     +G++RLDHAVGN  +L 
Sbjct: 204 IAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELG 263

Query: 201 KAVEYITGFTGFHEFSEFVAEDVGTVDSGLNSMVLASNNEAVLLPVNEPTFGTPRKSQIQ 380
            A+ Y+ GFTGFH+F+EF A+DVGT +SGLNS VLASN+E VLLP+NEP  GT RKSQIQ
Sbjct: 264 PALTYVAGFTGFHQFAEFTADDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQ 323

Query: 381 TYLEQNEGPGLQHLALLSNDIFTTLREMRARSELGGFEFMPT 506
           TYLE NEG GLQHLAL+S DIF TLREMR RS +GGF+FMP+
Sbjct: 324 TYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPS 365

>gb|AAM96960.1| 4-hydroxyphenylpyruvate dioxygenase HPD [Arabidopsis thaliana]
          Length = 473

 Score =  199 bits (505), Expect = 3e-50
 Identities = 102/162 (62%), Positives = 124/162 (75%), Gaps = 6/162 (3%)
 Frame = +3

Query: 39  ISEVLLYGEVVLRYVS----GSFQGPFLAGYTPVTDSAV--TSFGLQRLDHAVGNTHDLI 200
           I+EV LYG+VVLRYVS     + +  FL G+  V D++     +G++RLDHAVGN  +L 
Sbjct: 204 IAEVKLYGDVVLRYVSYKAEDTEKSEFLPGFERVEDASSFPLDYGIRRLDHAVGNVPELG 263

Query: 201 KAVEYITGFTGFHEFSEFVAEDVGTVDSGLNSMVLASNNEAVLLPVNEPTFGTPRKSQIQ 380
            A+ Y+ GFTGFH+F+EF A DVGT +SGLNS VLASN+E VLLP+NEP  GT RKSQIQ
Sbjct: 264 PALTYVAGFTGFHQFAEFTANDVGTAESGLNSAVLASNDEMVLLPINEPVHGTKRKSQIQ 323

Query: 381 TYLEQNEGPGLQHLALLSNDIFTTLREMRARSELGGFEFMPT 506
           TYLE NEG GLQHLAL+S DIF TLREMR RS +GGF+FMP+
Sbjct: 324 TYLEHNEGAGLQHLALMSEDIFRTLREMRKRSSIGGFDFMPS 365



EST assemble image


clone accession position
1 CM076b12_r AV391717 1 597
2 MX010g04_r BP086526 245 561




Chlamydomonas reinhardtii
Kazusa DNA Research Institute