KCC001660A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001660A_C01 KCC001660A_c01
gcacgagcccccccttttttttttttttttttttttttttttttCGCCCGCCCGACCTTA
CACTGCCGGAGAGCTAGGCTCCACATCATGCGTACTGTATATGGCTCACCTCACTCACAG
TATCACCACCCAAGATGCTCAATCGATACCCACTGGTGCGCCCCGATGAAATTGCATTCA
TTCAAAAACAAACACCGCACAATAGCCCGTTCTCCACACCACCGTGTACGCCGCATGCCA
CCCCTGCCGCATGCTGTAGAGCAGACGCAGCATTAGCAACCCCAAAGTCGGTGCACACCT
CATCGCCACTACGCCAGCACCTCCGTCCAACGCGCAACACAGCGCACACCCGCCGCATCG
CGTCCAACCGGCCAGCAACCAGCCCCGTGCATCCTCACGCCCGCAACTCACGCCGCCTAA
ACTGCCCACAAGAAATCTCCATCGAACCTCAGGCGCCCTAGTCCAGCACGCCGGCTCCAA
GCGCAAGCCTCCTTTCACCTGTCAGCGCCCGTAGCCCCGACCTTACACCTTGTTCAGCTT
GGTCACCATGCCCACGCGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001660A_C01 KCC001660A_c01
         (560 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_566340.1| proline-rich protein family [Arabidopsis thalia...    45  7e-04
ref|XP_322171.1| predicted protein [Neurospora crassa] gi|289182...    43  0.003
gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]              43  0.003
ref|NP_680446.1| protein kinase family [Arabidopsis thaliana]          43  0.003
ref|XP_329646.1| predicted protein [Neurospora crassa] gi|289199...    42  0.004

>ref|NP_566340.1| proline-rich protein family [Arabidopsis thaliana]
           gi|5923665|gb|AAD56316.1|AC009326_3 hypothetical protein
           [Arabidopsis thaliana]
           gi|6403487|gb|AAF07827.1|AC010871_3 hypothetical protein
           [Arabidopsis thaliana]
           gi|16226225|gb|AAL16108.1|AF428276_1 AT3g09000/T16O11_4
           [Arabidopsis thaliana] gi|23397207|gb|AAN31886.1|
           unknown protein [Arabidopsis thaliana]
          Length = 541

 Score = 45.1 bits (105), Expect = 7e-04
 Identities = 41/122 (33%), Positives = 56/122 (45%), Gaps = 6/122 (4%)
 Frame = +3

Query: 201 NSPFSTPPCTPHATPAACCRADAALATPKSVHTSSPLRQHLRPTRNTAHTRRIASNRPAT 380
           NS  STP  T  AT  A  RA  + A P++  TSS   +   PTR+       +S +P +
Sbjct: 183 NSRSSTP--TSRATLTAA-RATTSTAAPRTTTTSSGSARSATPTRSNPRPSSASSKKPVS 239

Query: 381 SPVHPHARNSRRLNCPQEISI-EPQAP*SST-PAPSASLLSPVSAR----SPDLTPCSAW 542
            P  P    +RR + P   SI   +AP   T P+P+ + LS   +R    SP L     W
Sbjct: 240 RPATP----TRRPSTPTGPSIVSSKAPSRGTSPSPTVNSLSKAPSRGTSPSPTLNSSRPW 295

Query: 543 SP 548
            P
Sbjct: 296 KP 297

>ref|XP_322171.1| predicted protein [Neurospora crassa] gi|28918297|gb|EAA27973.1|
           predicted protein [Neurospora crassa]
          Length = 902

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 43/147 (29%), Positives = 58/147 (39%), Gaps = 14/147 (9%)
 Frame = +3

Query: 150 PLVRPDEIAFIQKQTPHNSPFSTPPCTPHATPAACCRADAALATPKSVHTSSPLR----Q 317
           PL +   +A IQ +T  + P + PP  P   P    +     A   +V   S  R    Q
Sbjct: 113 PLDKKLPVAPIQTRTGISGPPTGPPTAPPPPPPQQAKPKLLPAPRSAVEAPSWERTAGSQ 172

Query: 318 HLRPTRNTAHTRRIASNRPATSPVHPHARNSRRLNC------PQEISIEPQAP*SSTPAP 479
           HL   R  A T    +N  +T P    A N++  N       P  I   P  P  S+P  
Sbjct: 173 HLGADRQKAATMITTANAASTPPTPTAASNAKPWNAPLPPLPPMSIPRRPVRPGISSPTS 232

Query: 480 SASLLSP----VSARSPDLTPCSAWSP 548
            + + SP    VS  SP L P +A  P
Sbjct: 233 PSLVNSPTSVAVSPDSPTLKPIAASRP 259

>gb|AAD55980.2|AF159297_1 extensin-like protein [Zea mays]
          Length = 1016

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 44/152 (28%), Positives = 62/152 (39%), Gaps = 9/152 (5%)
 Frame = +3

Query: 126  PPKMLNRYPLVRPDEIAFIQKQTPHNSPFSTPPCTPHATPAACCRADAALATPKSVHTSS 305
            PP   +  PL        ++K +P  +P S+PP TP ++P       A +++P  V  +S
Sbjct: 802  PPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPL-----APVSSPPQVEKTS 856

Query: 306  PLRQHLRPTRNTAHTRRIASNRPATSPVHPHARNSRRLNCPQEISIEPQAP*SS------ 467
            P                ++S  P   P+ P A  S  L  P+  S  P AP SS      
Sbjct: 857  P------------PPAPVSSPPPTPKPLPPPAPVS--LPPPEVKSSPPPAPISSPPPPAK 902

Query: 468  ---TPAPSASLLSPVSARSPDLTPCSAWSPCP 554
                PAP +SL  PV +  P   P    SP P
Sbjct: 903  SPPPPAPMSSLPPPVKSPPP---PAPVSSPPP 931

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 33/146 (22%), Positives = 56/146 (37%), Gaps = 5/146 (3%)
 Frame = +3

Query: 126  PPKMLNRYPLVRPDEIAFIQKQTPHNSPFSTPPCTPHATP-----AACCRADAALATPKS 290
            PP   +  PL        ++K +P  +P S+PP TP ++P     ++  + +     P  
Sbjct: 770  PPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKSSPPLAPVSSPPQVEKTSPPPAP 829

Query: 291  VHTSSPLRQHLRPTRNTAHTRRIASNRPATSPVHPHARNSRRLNCPQEISIEPQAP*SST 470
            V +  P  +   P    +   ++    P  +PV       + L  P  +S+ P    SS 
Sbjct: 830  VSSPPPTPKSSPPLAPVSSPPQVEKTSPPPAPVSSPPPTPKPLPPPAPVSLPPPEVKSSP 889

Query: 471  PAPSASLLSPVSARSPDLTPCSAWSP 548
            P    S   P +   P   P S+  P
Sbjct: 890  PPAPISSPPPPAKSPPPPAPMSSLPP 915

 Score = 34.3 bits (77), Expect = 1.2
 Identities = 36/144 (25%), Positives = 50/144 (34%)
 Frame = +3

Query: 123  SPPKMLNRYPLVRPDEIAFIQKQTPHNSPFSTPPCTPHATPAACCRADAALATPKSVHTS 302
            SPP + +  P V         K +P  +P S+PP     +P       A +++P     S
Sbjct: 753  SPPPLKSSPPPVPESSPPPTPKSSPPLAPVSSPPQVEKTSP-----PPAPVSSPPPTPKS 807

Query: 303  SPLRQHLRPTRNTAHTRRIASNRPATSPVHPHARNSRRLNCPQEISIEPQAP*SSTPAPS 482
            SP      P    +   ++    P  +PV            P   S  P AP SS P   
Sbjct: 808  SP------PLAPVSSPPQVEKTSPPPAPVSSPP--------PTPKSSPPLAPVSSPPQVE 853

Query: 483  ASLLSPVSARSPDLTPCSAWSPCP 554
             +   P    SP  TP     P P
Sbjct: 854  KTSPPPAPVSSPPPTPKPLPPPAP 877

 Score = 33.1 bits (74), Expect = 2.6
 Identities = 42/146 (28%), Positives = 55/146 (36%)
 Frame = +3

Query: 123  SPPKMLNRYPLVRPDEIAFIQKQTPHNSPFSTPPCTPHATPAACCRADAALATPKSVHTS 302
            SPP  L   PL  P       K TP   P    P  P  TP            P ++ TS
Sbjct: 650  SPPVKLP--PLPAPG------KSTP--PPEEEKPTPP--TPVKSSPPPEKSLPPPTLTTS 697

Query: 303  SPLRQHLRPTRNTAHTRRIASNRPATSPVHPHARNSRRLNCPQEISIEPQAP*SSTPAPS 482
             P ++   P           S  P  SPV      S+     + +S  PQAP SS+P   
Sbjct: 698  PPPQEKPTPPSTP-------SKPPPPSPVETLPPPSKSSPPEEPVSSPPQAPKSSSPPAP 750

Query: 483  ASLLSPVSARSPDLTPCSAWSPCPRA 560
             S   P+ + SP   P S+  P P++
Sbjct: 751  VSSPPPLKS-SPPPVPESSPPPTPKS 775

 Score = 31.6 bits (70), Expect = 7.7
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 2/133 (1%)
 Frame = +3

Query: 126 PPKMLNRYPLVRPDEIAFIQKQTPHNSPFSTPPCTPHATPAACCRADAALATP--KSVHT 299
           PP M +  P  R      + K  P  +P ++PP    + P         L+TP  KS   
Sbjct: 571 PPPMKSPPPPARVASPPPLMKSPPPPAPVASPPQPLKSPPPPV----LWLSTPSVKSPPP 626

Query: 300 SSPLRQHLRPTRNTAHTRRIASNRPATSPVHPHARNSRRLNCPQEISIEPQAP*SSTPAP 479
             P+     P ++      ++S  P    + P     +    P+E    P  P  S+P P
Sbjct: 627 PVPVASPPPPVKSPPPLAPVSSPSPPVK-LPPLPAPGKSTPPPEEEKPTPPTPVKSSPPP 685

Query: 480 SASLLSPVSARSP 518
             SL  P    SP
Sbjct: 686 EKSLPPPTLTTSP 698

 Score = 31.2 bits (69), Expect = 10.0
 Identities = 35/124 (28%), Positives = 42/124 (33%), Gaps = 2/124 (1%)
 Frame = +3

Query: 195 PHNSPFSTPPCTPHATPAACCRADAALATPKSVHTSSP--LRQHLRPTRNTAHTRRIASN 368
           P  SP  T P      P    +  AA + P +   SSP      L P   T       ++
Sbjct: 485 PAKSPPGTSPPASRGAPPLQAQPPAASSPPATPVKSSPPPAAVVLPPPAKTPSPPAPVAS 544

Query: 369 RPATSPVHPHARNSRRLNCPQEISIEPQAP*SSTPAPSASLLSPVSARSPDLTPCSAWSP 548
            P  +PV            PQ  S  P AP +S P P  S   P    SP     S   P
Sbjct: 545 PPPEAPVSSPQ--------PQVKSPPPPAPVASPPPPMKSPPPPARVASPPPLMKSPPPP 596

Query: 549 CPRA 560
            P A
Sbjct: 597 APVA 600

>ref|NP_680446.1| protein kinase family [Arabidopsis thaliana]
          Length = 1113

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 38/137 (27%), Positives = 59/137 (42%), Gaps = 4/137 (2%)
 Frame = +3

Query: 150 PLVRPDEIAFIQKQTPHNSPFSTPPCTPHATPAACCRADAALATPKSVHTSSPLRQHLRP 329
           P + P    F  + + H SP +TPP  P +TP+               H SSP    L  
Sbjct: 300 PSIAPSAPKF-NRHSHHTSPSTTPP--PDSTPSNVHH-----------HPSSPSPPPLSS 345

Query: 330 TRNTAHTRRIASNRPATSPVHPHARNSRRLNCPQEISIEPQAP*SSTPAPSASLLS---- 497
                  R+  ++ PA SP+ PH  + ++ N    ++  PQ+  + +P    SL+S    
Sbjct: 346 HHQHHQERKKIADSPAPSPLPPHLISPKKSNRKGSMTPPPQSHHAPSPPIPDSLISPAHA 405

Query: 498 PVSARSPDLTPCSAWSP 548
           PVS     ++P  A SP
Sbjct: 406 PVSFSMKRISPALAPSP 422

>ref|XP_329646.1| predicted protein [Neurospora crassa] gi|28919999|gb|EAA29387.1|
            predicted protein [Neurospora crassa]
          Length = 1112

 Score = 42.4 bits (98), Expect = 0.004
 Identities = 45/171 (26%), Positives = 68/171 (39%), Gaps = 2/171 (1%)
 Frame = +1

Query: 52   PTLHCRRARLHIMRTVYGSPHSQYHH--PRCSIDTHWCAPMKLHSFKNKHRTIARSPHHR 225
            PTL    A+L     +  +  SQ+H   PR         P+   + + +     + P  +
Sbjct: 711  PTLENYEAQLQAQLELKSNIESQHHSLIPR---------PIVTKNHQQQQSQQRQPPTQQ 761

Query: 226  VRRMPPLPHAVEQTQH*QPQSRCTPHRHYASTSVQRATQRTPAASRPTGQQPAPCILTPA 405
              R P   H    TQH   QS+  PH    S++ Q  TQR  + S+   QQ    +  P+
Sbjct: 762  HSRQPSQSH----TQHSMSQSQ--PHPRPESSAQQPQTQRPHSISQQPSQQHQTSVSQPS 815

Query: 406  THAA*TAHKKSPSNLRRPSPARRLQAQASFHLSAPVAPTLHLVQLGHHAHA 558
            T A   AH+      + PSP    Q +A+ H      P+      G H H+
Sbjct: 816  TQAQLQAHQS-----QTPSPMMSQQNRAN-HPYTQYRPSTSPYSQGQHQHS 860



EST assemble image


clone accession position
1 CM076a08_r AV391697 1 560
2 LCL004b02_r AV626197 45 249




Chlamydomonas reinhardtii
Kazusa DNA Research Institute