>KCC001658A_C01 KCC001658A_c01
gcaccagCGCACACTTACACTTCAATTTAACGAACTGCAATTTGCCCGCCCTTCTGTGAC
GGCTGCACCGGTCTGCATTTTCCTCCGCTTACTGTTCATTTAGTGCGCCGCCATGGCTCA
GGCTCCGAACCCCACCGTTGATGAGCTTGAGAAGAAGGAGGAGGACGAGTACCGCACCGG
TCCCCTCTCTGTTCTGACCCAGAGTGTCAAGACAAACGGCCAGGTCCTCATCAACTGCCG
CAACAACCATAAGCTACTTGCACGCGTGAAGGCGTTTGACCGCCACTGCAACATGATTCT
GGAGAACGTCAAGGAGATGTGGACGGAGATCCCGAAGACGGGGAAAGGCCAGAAGGCGTC
GCGGCCAGTTAACAAGGACCGCTTCGTCAGCAAAATGTTCTTGCGAGGAGACTCGGTCAT
CATGGTGCTCCGGAACCCCAAGTAAGGGCGCCATATCGGACACCCCTCGGCGGGCTCGGT
CGACGGGGCCGAGCCAGGAGCCCTCAGGCGATCAGTGAGCTGGAGGCTCGCGTGTCGAGG
GGTGTGTGTGATACACAAGCGGTTGGGTGT

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001658A_C01 KCC001658A_c01
         (570 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [...   179  2e-44
ref|NP_004588.1| small nuclear ribonucleoprotein polypeptide D2;...   177  9e-44
dbj|BAC32551.1| unnamed protein product [Mus musculus]                176  2e-43
ref|XP_318388.1| ENSANGP00000002741 [Anopheles gambiae] gi|21301...   175  4e-43
ref|NP_649645.1| CG1249-PA [Drosophila melanogaster] gi|33112452...   174  1e-42

>gb|AAM94277.1| small nuclear ribonucleoprotein D2-like protein [Chlamys farreri]
          Length = 119

 Score =  179 bits (454), Expect = 2e-44
 Identities = 85/113 (75%), Positives = 101/113 (89%), Gaps = 2/113 (1%)
 Frame = +2

Query: 107 AAMAQAPNP--TVDELEKKEEDEYRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFD 280
           +A+ Q P    T +EL+++E++E+ TGPLSVLTQSVK N QVLINCRNN KLLARVKAFD
Sbjct: 2   SALMQKPKSEMTPEELQQREQEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLARVKAFD 61

Query: 281 RHCNMILENVKEMWTEIPKTGKGQKASRPVNKDRFVSKMFLRGDSVIMVLRNP 439
           RHCNM+LENVKEMWTE+PKTGKG+K S+PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 62  RHCNMVLENVKEMWTEVPKTGKGKKKSKPVNKDRYISKMFLRGDSVILVLRNP 114

>ref|NP_004588.1| small nuclear ribonucleoprotein polypeptide D2; snRNP core protein
           D2 [Homo sapiens] gi|20821553|ref|XP_133225.1| small
           nuclear ribonucleoprotein D2 [Mus musculus]
           gi|27676406|ref|XP_214847.1| similar to Small nuclear
           ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2)
           [Rattus norvegicus] gi|29294624|ref|NP_808210.1| small
           nuclear ribonucleoprotein polypeptide D2; snRNP core
           protein D2 [Homo sapiens]
           gi|1173455|sp|P43330|SMD2_HUMAN Small nuclear
           ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2)
           gi|2136168|pir||I38861 small nuclear ribonucleoprotein
           chain D2 - human gi|6980599|pdb|1B34|B Chain B, Crystal
           Structure Of The D1d2 Sub-Complex From The Human Snrnp
           Core Domain gi|600748|gb|AAC13776.1| Sm D2
           gi|4558644|gb|AAD22673.1|AC007191_1 SMD2_HUMAN; SNRNP
           CORE PROTEIN D2; SM-D2 [Homo sapiens]
           gi|12653431|gb|AAH00486.1|AAH00486 small nuclear
           ribonucleoprotein D2 polypeptide (16.5kD) [Homo sapiens]
           gi|12804955|gb|AAH01930.1| Small nuclear
           ribonucleoprotein polypeptide D2 [Homo sapiens]
           gi|12840909|dbj|BAB25006.1| unnamed protein product [Mus
           musculus] gi|26353034|dbj|BAC40147.1| unnamed protein
           product [Mus musculus] gi|27696661|gb|AAH43014.1| Snrpd2
           protein [Mus musculus] gi|30109280|gb|AAH51208.1|
           Similar to Small nuclear ribonucleoprotein Sm [Mus
           musculus]
          Length = 118

 Score =  177 bits (449), Expect = 9e-44
 Identities = 82/102 (80%), Positives = 95/102 (92%)
 Frame = +2

Query: 134 TVDELEKKEEDEYRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVK 313
           T +EL+K+EE+E+ TGPLSVLTQSVK N QVLINCRNN KLL RVKAFDRHCNM+LENVK
Sbjct: 12  TPEELQKREEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 314 EMWTEIPKTGKGQKASRPVNKDRFVSKMFLRGDSVIMVLRNP 439
           EMWTE+PK+GKG+K S+PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

>dbj|BAC32551.1| unnamed protein product [Mus musculus]
          Length = 118

 Score =  176 bits (446), Expect = 2e-43
 Identities = 81/102 (79%), Positives = 95/102 (92%)
 Frame = +2

Query: 134 TVDELEKKEEDEYRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVK 313
           T +EL+K+EE+E+ TGPLS+LTQSVK N QVLINCRNN KLL RVKAFDRHCNM+LENVK
Sbjct: 12  TPEELQKREEEEFNTGPLSMLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 71

Query: 314 EMWTEIPKTGKGQKASRPVNKDRFVSKMFLRGDSVIMVLRNP 439
           EMWTE+PK+GKG+K S+PVNKDR++SKMFLRGDSVI+VLRNP
Sbjct: 72  EMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNP 113

>ref|XP_318388.1| ENSANGP00000002741 [Anopheles gambiae] gi|21301539|gb|EAA13684.1|
           ENSANGP00000002741 [Anopheles gambiae str. PEST]
          Length = 118

 Score =  175 bits (443), Expect = 4e-43
 Identities = 82/103 (79%), Positives = 94/103 (90%)
 Frame = +2

Query: 134 TVDELEKKEEDEYRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVK 313
           T +EL ++EE+E+ TGPLSVLTQSVK N QVLINCRNN KLL RVKAFDRHCNM+LENVK
Sbjct: 10  TPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 69

Query: 314 EMWTEIPKTGKGQKASRPVNKDRFVSKMFLRGDSVIMVLRNPK 442
           EMWTEIP+TGKG+K  +PVNKDRF+SKMFLRGDSVI+VLRNP+
Sbjct: 70  EMWTEIPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNPQ 112

>ref|NP_649645.1| CG1249-PA [Drosophila melanogaster]
           gi|33112452|sp|Q9VI10|SMD2_DROME Probable small nuclear
           ribonucleoprotein Sm D2 (snRNP core protein D2) (Sm-D2)
           gi|7298930|gb|AAF54135.1| CG1249-PA [Drosophila
           melanogaster] gi|17861966|gb|AAL39460.1| LD03002p
           [Drosophila melanogaster]
          Length = 119

 Score =  174 bits (440), Expect = 1e-42
 Identities = 81/102 (79%), Positives = 93/102 (90%)
 Frame = +2

Query: 134 TVDELEKKEEDEYRTGPLSVLTQSVKTNGQVLINCRNNHKLLARVKAFDRHCNMILENVK 313
           T +EL ++EE+E+ TGPLSVLTQSVK N QVLINCRNN KLL RVKAFDRHCNM+LENVK
Sbjct: 11  TPEELARQEEEEFNTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVK 70

Query: 314 EMWTEIPKTGKGQKASRPVNKDRFVSKMFLRGDSVIMVLRNP 439
           EMWTE+P+TGKG+K  +PVNKDRF+SKMFLRGDSVI+VLRNP
Sbjct: 71  EMWTELPRTGKGKKKVKPVNKDRFISKMFLRGDSVILVLRNP 112

EST assemble image

clone accession position 1 CM075h10_r AV391607 1 608 2 LC019d08_r AV620240 6 570 3 MX018e10_r BP086855 14 464

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