KCC001655A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001655A_C01 KCC001655A_c01
gcacgagccgactgcgcttcatccatctggccagtcggcacctaGCGTTAGCCTCACCTA
TCTGGCGCGTTGGGCGTGTAGAGCATCAAAGCATCGTTCGTCGCTTCTACGAGAAAGTAC
CCGTTTGATATCGTGACCATATCCACCGGGTTTACGTTGATCAGTCTTTGCTTGCGCAGC
AGCGCATCGTCCCGCAACCAAACCTTGCTGGCGCGGGAGCTCAGTAGCGAAATGGCTGGC
AAGAGCACGATGGCCCTTGCTTGGGCACTTGTAGCGGCCATTCTCCTGGCCTCCGGTCCT
GCCGAGGCCGCACGCAAAGCTTTCCTCAGCGACCTCGAGGCGAGCAGCAGTCAGGCAGCT
GCCAGCAGGAGCGGGCGCCGCCTGCTGCACTCTGAAATTCCGGAGGGTGCTGATGTGGAG
ATTCTCGACAGCGCGGACTACGATGTTATCGAGGTCCTGAGCGCCGCGTATGATCCCATG
ATTGGCGCATACGGCGGCTATGGCGTGTACGGATACTATGGCAACTTCTATGGCGTATAT
GGCTCTTACGCTGGTGACTTTTTTGTGGACTACATGTCTGAGCTTACCGACGAGGAGATC
TTCGCTGAGCTGGACAAAGGCGAGCTGAACCCTGCCGGCGGGCAGCTTCCGGGCGGCCAC
CGCCGCAGCCTGCTGCAGCACCACATGGGCGACGGCCACGATCACGGCCACGGCTACATG
GGGCAGGAGGTCCCCGTCGAGGACGCTGAGCTGCTGGACTGGCCGTTCGAGGTTACTGAC
TACGGCGCTGCCTTCGACGTCTTCGACAACGGTATGGGCAGCTACGGCATCTACTCTGGC
TACGCCTATGGCTCGTACAGCGGCATGACCTCGGTCTACGGCGGCTACTACGGCGGCGAA
TGGTGGCTGGACGCCGAGGGCGTGTGGCAGCACGTGGAGGAGATGGGCACGGCCGCGTGG
CTGCTGGACGACG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001655A_C01 KCC001655A_c01
         (973 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq...    65  2e-09
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ...    63  7e-09
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495...    62  1e-08
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]                  62  1e-08
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote...    62  2e-08

>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
           including a metal-binding cysteine cluster [Thermobifida
           fusca]
          Length = 1958

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 83/265 (31%), Positives = 106/265 (39%), Gaps = 8/265 (3%)
 Frame = -1

Query: 973 RRPAATRPCPSPPRAATR-PRRPATIRRRSSRRRPRSC----RCTSHRRSQSRCRSCPYR 809
           RRPAA       P  A R P RPA +RRR  RRR R C    R   HR ++ R R    R
Sbjct: 82  RRPAARHRRDRRPAVAGRGPGRPARLRRRGPRRRRRLCPRPRRTPRHRAARPRLRRTGPR 141

Query: 808 CRRRRRQRRSQ*PRTASPAAQRPRRGPP--APCSRGRDRGRRPCGAAAGCGGGRPEAARR 635
            +R    R+    RT +    R R GP   A   RGR   +RP  AA      RP AAR 
Sbjct: 142 RQRPHPHRQRPGRRTPARPGHRGRGGPAVAAAARRGRPGHQRP--AAPHPHRPRPAAARA 199

Query: 634 QGSARLCPAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSG 455
           + +A    AQ R+ RR       + +  R+   R R       R S + R +   +   G
Sbjct: 200 RRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTPRPHARGSGQGRVAGRRSGAPG 259

Query: 454 PR*HRSP-RCRESPHQHPPEFQSAAGGARSCWQLPDCCSPRGR*GKLCVRPRQDRRPGEW 278
               R P   R  P +   + ++A G             P G       RP  DRR G  
Sbjct: 260 AAGRRQPLPGRPRPVRGAQQHRAAQGAL-----------PGGH------RPEADRR-GVR 301

Query: 277 PLQVPKQGPSCSCQPFRY*APAPAR 203
           P   P++ P    +P R   P PAR
Sbjct: 302 P--APRRLPDSGTRPDRQPPPRPAR 324

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 68/201 (33%), Positives = 83/201 (40%), Gaps = 17/201 (8%)
 Frame = -1

Query: 922 RPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQR 743
           RP RPA   R  +RRRP      +  R +        R  R  R++ +  PR   P  +R
Sbjct: 13  RPHRPA---RGPARRRPAG---GAAGRGRPVVGGGVARLARPARRQPAHLPRARRPRLRR 66

Query: 742 PRRGP--PAPCSRGR-------DRGRRPCGAAAGCGGGRPEAARRQG---SARLCPAQRR 599
           PR G   P P   GR        R RRP  A AG G GRP   RR+G     RLCP  RR
Sbjct: 67  PRGGAALPGPRRGGRRRPAARHRRDRRP--AVAGRGPGRPARLRRRGPRRRRRLCPRPRR 124

Query: 598 SPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRES 419
           +PR  A      +   R++  R +  H  R R  RR      H  R GP    + R    
Sbjct: 125 TPRHRA-----ARPRLRRTGPRRQRPHPHRQRPGRRTPARPGHRGRGGPAVAAAARRGRP 179

Query: 418 PHQ-----HPPEFQSAAGGAR 371
            HQ     HP   + AA  AR
Sbjct: 180 GHQRPAAPHPHRPRPAAARAR 200

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 37/128 (28%), Positives = 49/128 (37%), Gaps = 6/128 (4%)
 Frame = -1

Query: 898 RRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQRPRRGPPAP 719
           RR+    RPR  R     R+        +R    RR  R   PR    +  RP R PP  
Sbjct: 263 RRQPLPGRPRPVRGAQQHRAAQGALPGGHRPEADRRGVRPA-PRRLPDSGTRPDRQPPPR 321

Query: 718 CSRGRDRGRRPCGAAAGCGG-GRPEAARRQGSARLCPAQ-----RRSPRR*AQTCSPQKS 557
            +R   R  RP   A      GRP   R   +    PA      RR PR   +   P+++
Sbjct: 322 PARVLARPARPVRRAGHRRPPGRPGRGRLPTAGGALPAGVGGTGRRGPRPRRRRPRPRRT 381

Query: 556 HQRKSHIR 533
           H R++  R
Sbjct: 382 HPRRNRTR 389

>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
           [Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
           elegans RSR-1 protein (corresponding sequence F28D9.1)
           [Caenorhabditis elegans]
          Length = 601

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
 Frame = -1

Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCT--SHRRSQSRCRSCPYRCRR 800
           RR  +    P+P RA +R + P    RR  RR P + +    + +R++SR +S P   RR
Sbjct: 320 RRSPSQSKSPAPKRAKSRSKSPPAPARR--RRSPSASKSPPPAPKRAKSRSKSPP--ARR 375

Query: 799 RRRQRRSQ*PRTASPAAQRPRRGP-----PAPCSRGRDRGRRPCGAAAGCGGGRPEAARR 635
           RR    S+     SP A R RR P     PAP  R     RR    +A      P+ A+ 
Sbjct: 376 RRSPSASK-----SPPAPRRRRSPSKSRSPAP-KREIPPARRRRSPSASKSPPAPKRAKS 429

Query: 634 QGSARLCPAQRRSPRR*AQTC-----SPQKSHQRKSHIRHRSCHSIRTRHSRRMRQ-SWD 473
           +  +   P +RRSP +          SP KS Q     R RS    ++R  RR R  +  
Sbjct: 430 RSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPR--RRRSPSGSKSRSPRRRRSPAAA 487

Query: 472 HTRRSGPR*HRSPRCRESP 416
             RR  P+  RSPR R SP
Sbjct: 488 PRRRQSPQRRRSPRRRRSP 506

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 67/220 (30%), Positives = 88/220 (39%), Gaps = 25/220 (11%)
 Frame = -1

Query: 973 RRPAATR-PCPSPPRAATRPRRPATIRRRSS-----------RRRPRSCRCTS------- 851
           R P+A++ P P+P RA +R + P   RRRS            RR P   R  +       
Sbjct: 349 RSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPP 408

Query: 850 --HRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGA 677
              RRS S  +S P   R + R +        SP A R RR P    S    R R P  +
Sbjct: 409 ARRRRSPSASKSPPAPKRAKSRSK--------SPPAPRRRRSPSQSKSPAPRRRRSPSKS 460

Query: 676 AAGCGGGRPEAARRQ----GSARLCPAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIR 509
                   P+A RR+    GS    P +RRSP       +P++   R+S  R RS     
Sbjct: 461 --------PQAPRRRRSPSGSKSRSPRRRRSP-----AAAPRR---RQSPQRRRS----- 499

Query: 508 TRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQS 389
               RR   S     RS P   R PR ++S  Q P   +S
Sbjct: 500 --PRRRRSPSSSSRSRSPPPPPRRPR-QDSEQQAPVAVKS 536

 Score = 36.6 bits (83), Expect = 0.66
 Identities = 53/231 (22%), Positives = 76/231 (31%)
 Frame = -1

Query: 925 TRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQ 746
           T P R   +R      R  S R T  RR+ S            RR   +   R + P   
Sbjct: 161 TGPAREKAVRDDRIPARALSPRKTPPRRNASPGGDGGGGSPAARRGGSAGNRRRSPPRRG 220

Query: 745 RPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPRR*AQTCSP 566
            PRRG P   +R     RR  G+    GG R +              RR  RR  +    
Sbjct: 221 SPRRGSPRRDTRRSPPRRR--GSPPARGGDRRD--------------RREDRRPVRDEKE 264

Query: 565 QKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQSA 386
           ++   R+  I  +  H       + +       +   PR  RSP   +S    PP  +  
Sbjct: 265 REEESRRREIERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKS----PPPARRR 320

Query: 385 AGGARSCWQLPDCCSPRGR*GKLCVRPRQDRRPGEWPLQVPKQGPSCSCQP 233
              ++S    P     R +      R R+     + P   PK+  S S  P
Sbjct: 321 RSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSP 371

>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
            unnamed protein product [Mus musculus]
          Length = 2607

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 68/202 (33%), Positives = 86/202 (41%), Gaps = 9/202 (4%)
 Frame = -1

Query: 943  SPPRAATRPRRPATIRRRSSR--RRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQ--RRSQ 776
            +P R  +R R PA  R RS    RR RS   T  RR +SR RS P R R R R   RRS 
Sbjct: 489  TPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRR-RSRTRS-PVRRRSRSRSQARRSG 546

Query: 775  *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRS 596
              R+ +PA +  R     P  RGR R R P   +A      P  ARR  S    PA+RRS
Sbjct: 547  RSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTP--ARRGRSRSRTPARRRS 604

Query: 595  PRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRR--MRQSWDHTRRSGPR*H---RSPR 431
              R        +SH R    R RS  S   ++  R   R+S  ++     + H   R  R
Sbjct: 605  RSR--SLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSR 662

Query: 430  CRESPHQHPPEFQSAAGGARSC 365
               SP       + +  G+  C
Sbjct: 663  SLSSPRSKAKSLRRSLSGSSPC 684

 Score = 57.0 bits (136), Expect = 5e-07
 Identities = 54/186 (29%), Positives = 77/186 (41%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
            R+ + +R  P+P + +     PAT RR  S          S RRS+S  R+ P   RR R
Sbjct: 1709 RKRSRSRTSPAPWKRSRSRASPATHRRSRS-----ITPLISRRRSRS--RTSPVSRRRSR 1761

Query: 793  RQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLC 614
               R +    ASP ++R  R    P +R R R R P    +      P   RR+  +R  
Sbjct: 1762 SVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRS--RSRTPPVTRRRSRSRTP 1819

Query: 613  PAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSP 434
            P  RR  R      + ++S  R S +  R   S  +  +RR  +S     R+ P   R  
Sbjct: 1820 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS-----RTSPVTRRRS 1874

Query: 433  RCRESP 416
            R R  P
Sbjct: 1875 RSRTPP 1880

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 65/214 (30%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
 Frame = -1

Query: 943  SPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQS----RCRSCPYRCRRRRRQRRSQ 776
            +P   A R R PAT R RS  R P       H RS+S    R RS     + R  QRR +
Sbjct: 378  TPSHRAGRSRSPATKRGRSRSRTPTK---RGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 434

Query: 775  *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSAR-LCPAQRR 599
                  P   R R       SR   RGR    + A  G  R     R+G +R   PA+RR
Sbjct: 435  SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 494

Query: 598  S-----PRR*AQTCSP------------QKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDH 470
            S      RR +++ +P            ++  + +S +R RS    + R S R R S   
Sbjct: 495  SRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSR-SRTP 553

Query: 469  TRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARS 368
             RRSG    R+P  R       P  +SA   +R+
Sbjct: 554  ARRSGRSRSRTPARRGRSRSRTPARRSARSRSRT 587

 Score = 49.7 bits (117), Expect = 8e-05
 Identities = 57/196 (29%), Positives = 79/196 (40%), Gaps = 10/196 (5%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATI-RRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRR 797
            R P+ + P P+    ++R RR  +  R +++ RR RS         +SR RS   + R  
Sbjct: 1586 RSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTT 1645

Query: 796  RRQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGG------GRPEAARR 635
            RR+ RS   ++ S   QR R       SR R   RR  G+             R  + RR
Sbjct: 1646 RRRDRSGSSQSTSRRRQRSR-------SRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRR 1698

Query: 634  QGSARLCPAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIR---TRHSRRMRQSWDHTR 464
            +G +R     R+  R        ++S  R S   HR   SI    +R   R R S    R
Sbjct: 1699 RGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSITPLISRRRSRSRTSPVSRR 1758

Query: 463  RSGPR*HRSPRCRESP 416
            RS     R  R R SP
Sbjct: 1759 RSRSVNRRRSRSRASP 1774

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 57/177 (32%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
 Frame = -1

Query: 934 RAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*P----- 770
           R  +R R PA  R RS  R P   R  S  R+ +R RS   R   RR + RS+ P     
Sbjct: 471 RGRSRSRTPAR-RGRSRSRTP--ARRRSRSRTPARRRS-RSRTPARRGRSRSRTPTRRRS 526

Query: 769 RTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPR 590
           RT SP  +R R    A  S GR R R P   A   G  R     R+G +R     RRS R
Sbjct: 527 RTRSPVRRRSRSRSQARRS-GRSRSRTP---ARRSGRSRSRTPARRGRSRSRTPARRSAR 582

Query: 589 R*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRES 419
             ++T + +   + ++  R RS      R  R   ++     RSG    R  + R S
Sbjct: 583 SRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTS 639

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 56/204 (27%), Positives = 82/204 (39%), Gaps = 4/204 (1%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
            +RP  +R   +  R  +R  R      RS   R RS   T  RR +SR R+       RR
Sbjct: 439  QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRT-----PARR 493

Query: 793  RQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLC 614
            R       R+ +PA +R R   PA   RGR R R P    +         +R +  AR  
Sbjct: 494  RS------RSRTPARRRSRSRTPA--RRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRS 545

Query: 613  PAQR-RSP-RR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HR 440
               R R+P RR  ++ S   + + +S  R  +  S R+R     R+    +R    R  R
Sbjct: 546  GRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARRRSR 605

Query: 439  SPRC--RESPHQHPPEFQSAAGGA 374
            S     R   H   P+ +  +G +
Sbjct: 606  SRSLVRRGRSHSRTPQRRGRSGSS 629

 Score = 41.6 bits (96), Expect = 0.021
 Identities = 35/93 (37%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
            RR + +R  P  PR  +R R P  IRRRS  R PR+      R  +S  RS P   RR  
Sbjct: 1883 RRRSRSRT-PLLPRKRSRSRSPLAIRRRSRSRTPRAA-----RGKRSLTRSPPAIRRRSA 1936

Query: 793  RQRRSQ*PRTASPAAQRPRRG---PPAPCSRGR 704
                S   R+A+P A R   G   PP   S  R
Sbjct: 1937 SGSSSDRSRSATPPATRNHSGSRTPPVALSSSR 1969

 Score = 40.0 bits (92), Expect = 0.060
 Identities = 56/201 (27%), Positives = 77/201 (37%), Gaps = 25/201 (12%)
 Frame = -1

Query: 934  RAATRPRRPATIRRRSSRRRPRSCR-CTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTAS 758
            ++ T P      RRRSSR  P   R     RRS+S   S   R R   R+RRS  P  +S
Sbjct: 1541 KSRTPP------RRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRS--PSVSS 1592

Query: 757  P------AAQRPRRGPPAP-----CSRGRDRGRRPCGAAAGCGGGRPEAAR------RQG 629
            P       + R RR   +P       RGR    +P G        R E  R      R G
Sbjct: 1593 PEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSG 1652

Query: 628  SARLCPAQRRSPRR*AQTCSPQK---SHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRS 458
            S++    +R+  R  ++    ++    +  +S  R  S  +   R   R R      +RS
Sbjct: 1653 SSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 1712

Query: 457  GPR*HRSP----RCRESPHQH 407
              R   +P    R R SP  H
Sbjct: 1713 RSRTSPAPWKRSRSRASPATH 1733

 Score = 38.1 bits (87), Expect = 0.23
 Identities = 88/347 (25%), Positives = 129/347 (36%), Gaps = 25/347 (7%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPA----TIRRRSSRRRPRSCRCTSHR-----RSQSRCRS 821
            +  +A RP PSP R++T P  PA     + +     RP +   +S          S  R 
Sbjct: 245  KEKSAVRPSPSPERSSTGPELPAPTPLLVEQHDDSPRPLAAIPSSQEPVNPSSEASPTRG 304

Query: 820  C-PYRCRRRRRQRRSQ*PRTASP--------AAQRPR--RGPPAPCSRGRDRGRRPCGAA 674
            C P +   +  Q  S      SP        A+  P   +  PAP SR R+    P    
Sbjct: 305  CSPPKSPEKPPQSTSSESCPPSPQPTKVSRHASSSPESLKPTPAPGSR-REISSSPTSKN 363

Query: 673  AGCGGGRPEAARRQGSARLCPAQRRSPRR*AQT---CSPQKSHQRKSHIRHRSCHSIRTR 503
               G      A+R  S    P+ R    R   T    S  ++  ++ H R RS    R+R
Sbjct: 364  RSHG-----RAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSR 418

Query: 502  HSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARSCWQLPDCCSPRGR*G 323
             ++R  +S    RR   R  + P    S +        +A   RS  + P   + RGR  
Sbjct: 419  SAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSP---ATRGR-- 473

Query: 322  KLCVRPRQDRRPGEWPLQVPKQGPSCSCQPFRY*APA--PARFGCGTMRCCASKD*ST*T 149
                R R   R G    + P +  S S  P R  + +  PAR G    R    +   T +
Sbjct: 474  ---SRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRS 530

Query: 148  RWIWSRYQTGTFS*KRRTML*CSTRPTRQIGEANARCRLARWMKRSR 8
                 R ++ + S  RR+    S  P R+ G + +R    R   RSR
Sbjct: 531  P---VRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSR 574

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 49/186 (26%), Positives = 72/186 (38%)
 Frame = -1

Query: 946  PSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PR 767
            P+     +R R PA  R RS  R P      + R ++SR R+   R R R R        
Sbjct: 553  PARRSGRSRSRTPAR-RGRSRSRTP------ARRSARSRSRTPARRGRSRSR-------- 597

Query: 766  TASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPRR 587
              +PA +R R    +   RGR   R P     G  G   E   +          R S RR
Sbjct: 598  --TPARRRSR--SRSLVRRGRSHSRTP--QRRGRSGSSSERKNK---------SRTSQRR 642

Query: 586  *AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQH 407
                 SP+      S  R RS  S R++ ++ +R+S   +     +  ++P  R      
Sbjct: 643  SRSNSSPEMKKSHVSSRRSRSLSSPRSK-AKSLRRSLSGSSPCPKQKSQTPTRRSRSGSS 701

Query: 406  PPEFQS 389
            PP+ +S
Sbjct: 702  PPKQKS 707

>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
          Length = 2607

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 68/202 (33%), Positives = 86/202 (41%), Gaps = 9/202 (4%)
 Frame = -1

Query: 943  SPPRAATRPRRPATIRRRSSR--RRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQ--RRSQ 776
            +P R  +R R PA  R RS    RR RS   T  RR +SR RS P R R R R   RRS 
Sbjct: 489  TPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARR-RSRTRS-PVRRRSRSRSQARRSG 546

Query: 775  *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRS 596
              R+ +PA +  R     P  RGR R R P   +A      P  ARR  S    PA+RRS
Sbjct: 547  RSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTP--ARRGRSRSRTPARRRS 604

Query: 595  PRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRR--MRQSWDHTRRSGPR*H---RSPR 431
              R        +SH R    R RS  S   ++  R   R+S  ++     + H   R  R
Sbjct: 605  RSR--SLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSR 662

Query: 430  CRESPHQHPPEFQSAAGGARSC 365
               SP       + +  G+  C
Sbjct: 663  SLSSPRSKAKSLRRSLSGSSPC 684

 Score = 60.1 bits (144), Expect = 6e-08
 Identities = 54/186 (29%), Positives = 77/186 (41%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
            R+ + +R  P+P + +     PAT RR  SR    S       R +SR R+ P   RR R
Sbjct: 1709 RKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS-------RRRSRSRTSPVSRRRSR 1761

Query: 793  RQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLC 614
               R +    ASP ++R  R    P +R R R R P    +      P   RR+  +R  
Sbjct: 1762 SVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRS--RSRTPPVTRRRSRSRTP 1819

Query: 613  PAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSP 434
            P  RR  R      + ++S  R S +  R   S  +  +RR  +S     R+ P   R  
Sbjct: 1820 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS-----RTSPVTRRRS 1874

Query: 433  RCRESP 416
            R R  P
Sbjct: 1875 RSRTPP 1880

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 65/214 (30%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
 Frame = -1

Query: 943  SPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQS----RCRSCPYRCRRRRRQRRSQ 776
            +P   A R R PAT R RS  R P       H RS+S    R RS     + R  QRR +
Sbjct: 378  TPSHRAGRSRSPATKRGRSRSRTPTK---RGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 434

Query: 775  *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSAR-LCPAQRR 599
                  P   R R       SR   RGR    + A  G  R     R+G +R   PA+RR
Sbjct: 435  SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 494

Query: 598  S-----PRR*AQTCSP------------QKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDH 470
            S      RR +++ +P            ++  + +S +R RS    + R S R R S   
Sbjct: 495  SRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSR-SRTP 553

Query: 469  TRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARS 368
             RRSG    R+P  R       P  +SA   +R+
Sbjct: 554  ARRSGRSRSRTPARRGRSRSRTPARRSARSRSRT 587

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 62/198 (31%), Positives = 80/198 (40%), Gaps = 14/198 (7%)
 Frame = -1

Query: 952  PCPSP---PRAATRPRRPATIRRRSSRRRPR--SCRCTSHRRSQSRCRSCPYRCRRRRRQ 788
            P P P    R+ +R RR  T   R++RRR R  S + TS RR +SR RS     R  RR+
Sbjct: 1623 PSPKPRGLQRSRSRSRREKT---RTTRRRDRSGSSQSTSRRRQRSRSRS-----RVTRRR 1674

Query: 787  RRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPA 608
            R      + SP  Q   R       R R R R P  +          A  ++  +R  PA
Sbjct: 1675 RGGSGYHSRSPTRQESSR---TSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPA 1731

Query: 607  QRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR------- 449
              R  R      S ++S  R S +  R   S+  R S R R S    RRS  R       
Sbjct: 1732 THRRSRSRTPLISRRRSRSRTSPVSRRRSRSVNRRRS-RSRASPVSRRRSRSRTPPVTRR 1790

Query: 448  --*HRSPRCRESPHQHPP 401
                R+P  R S  + PP
Sbjct: 1791 RSRSRTPTRRRSRSRTPP 1808

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 57/177 (32%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
 Frame = -1

Query: 934 RAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*P----- 770
           R  +R R PA  R RS  R P   R  S  R+ +R RS   R   RR + RS+ P     
Sbjct: 471 RGRSRSRTPAR-RGRSRSRTP--ARRRSRSRTPARRRS-RSRTPARRGRSRSRTPARRRS 526

Query: 769 RTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPR 590
           RT SP  +R R    A  S GR R R P   A   G  R     R+G +R     RRS R
Sbjct: 527 RTRSPVRRRSRSRSQARRS-GRSRSRTP---ARRSGRSRSRTPARRGRSRSRTPARRSAR 582

Query: 589 R*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRES 419
             ++T + +   + ++  R RS      R  R   ++     RSG    R  + R S
Sbjct: 583 SRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTS 639

 Score = 41.6 bits (96), Expect = 0.021
 Identities = 35/93 (37%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
            RR + +R  P  PR  +R R P  IRRRS  R PR+      R  +S  RS P   RR  
Sbjct: 1883 RRRSRSRT-PLLPRKRSRSRSPLAIRRRSRSRTPRAA-----RGKRSLTRSPPAIRRRSA 1936

Query: 793  RQRRSQ*PRTASPAAQRPRRG---PPAPCSRGR 704
                S   R+A+P A R   G   PP   S  R
Sbjct: 1937 SGSSSDRSRSATPPATRNHSGSRTPPVALSSSR 1969

 Score = 40.8 bits (94), Expect = 0.035
 Identities = 87/349 (24%), Positives = 132/349 (36%), Gaps = 27/349 (7%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPA----TIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYR- 809
            +  +A RP PSP R++T P  PA     + +     RP +   +S         + P R 
Sbjct: 245  KEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRG 304

Query: 808  CRRRRRQRRSQ*PRTAS----PAAQRPRRG-------------PPAPCSRGRDRGRRPCG 680
            C   +   +   P++ S    P + +P +G              PAP SR R+    P  
Sbjct: 305  CSPPKSPEKP--PQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSR-REISSSPTS 361

Query: 679  AAAGCGGGRPEAARRQGSARLCPAQRRSPRR*AQT---CSPQKSHQRKSHIRHRSCHSIR 509
                 G      A+R  S    P+ R    R   T    S  ++  ++ H R RS    R
Sbjct: 362  KNRSHG-----RAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRR 416

Query: 508  TRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARSCWQLPDCCSPRGR 329
            +R ++R  +S    RR   R  + P    S +        +A   RS  + P   + RGR
Sbjct: 417  SRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSP---ATRGR 473

Query: 328  *GKLCVRPRQDRRPGEWPLQVPKQGPSCSCQPFRY*APA--PARFGCGTMRCCASKD*ST 155
                  R R   R G    + P +  S S  P R  + +  PAR G    R  A +   T
Sbjct: 474  -----SRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRT 528

Query: 154  *TRWIWSRYQTGTFS*KRRTML*CSTRPTRQIGEANARCRLARWMKRSR 8
             +     R ++ + S  RR+    S  P R+ G + +R    R   RSR
Sbjct: 529  RSP---VRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSR 574

 Score = 39.7 bits (91), Expect = 0.078
 Identities = 56/201 (27%), Positives = 77/201 (37%), Gaps = 25/201 (12%)
 Frame = -1

Query: 934  RAATRPRRPATIRRRSSRRRPRSCR-CTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTAS 758
            ++ T P      RRRSSR  P   R     RRS+S   S   R R   R+RRS  P  +S
Sbjct: 1541 KSHTPP------RRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRS--PSVSS 1592

Query: 757  P------AAQRPRRGPPAP-----CSRGRDRGRRPCGAAAGCGGGRPEAAR------RQG 629
            P       + R RR   +P       RGR    +P G        R E  R      R G
Sbjct: 1593 PEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSG 1652

Query: 628  SARLCPAQRRSPRR*AQTCSPQK---SHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRS 458
            S++    +R+  R  ++    ++    +  +S  R  S  +   R   R R      +RS
Sbjct: 1653 SSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 1712

Query: 457  GPR*HRSP----RCRESPHQH 407
              R   +P    R R SP  H
Sbjct: 1713 RSRTSPAPWKRSRSRASPATH 1733

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 60/203 (29%), Positives = 78/203 (37%), Gaps = 30/203 (14%)
 Frame = -1

Query: 943  SPPRAATRPRRPATIRRRSSRRRPRSCRCTSH---------RRSQSRCRSCPYRCRRRRR 791
            +PPR  +    P   R+    RR RS   +           RRS S     P    R  R
Sbjct: 1544 TPPRRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRSPSVSSPEPTEKSRSSR 1603

Query: 790  QRRS-Q*PRTASPAAQRPRRG-PPAPCSRGRDRGR--------RPCGAAAGCGGGRPEAA 641
            +RRS   PRT + +    RRG  P+P  RG  R R        R        G  +  + 
Sbjct: 1604 RRRSVSSPRTKTTS----RRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSR 1659

Query: 640  RRQGS---ARLCPAQR-------RSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRR 491
            RRQ S   +R+   +R       RSP R  Q  S   S +R+   R       R+R SR 
Sbjct: 1660 RRQRSRSRSRVTRRRRGGSGYHSRSPTR--QESSRTSSRRRRGRSRTPLTSRKRSR-SRT 1716

Query: 490  MRQSWDHTR-RSGPR*HRSPRCR 425
                W  +R R+ P  HR  R R
Sbjct: 1717 SPAPWKRSRSRASPATHRRSRSR 1739

>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
           plenty-of-prolines-101; serine/arginine repetitive
           matrix protein 1 [Rattus norvegicus]
          Length = 958

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
 Frame = -1

Query: 946 PSPPRAATRPR---RPATIRRRSSRRRPRSCRCTSHRRSQ--SRCRSCPYRCRRRRRQRR 782
           PSP + + + +   RP +  R  SR R RS R  SH R +   R RS  Y  RRR   RR
Sbjct: 318 PSPEKNSKKEKEKTRPRSRSRSKSRSRTRS-RSPSHTRPRRRHRSRSRSYSPRRRPSPRR 376

Query: 781 SQ*PRTASPAAQRPRRGPPAP---CSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCP 611
              PR  +P    PRR PP P    SR   R RR   A+         ++R +   +  P
Sbjct: 377 RPSPRRRTP----PRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPP 432

Query: 610 AQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSI----RTRHS---------RRMRQSWDH 470
            +  SP R  +  SP  S  R+   RHR         +TRHS         R+ R S   
Sbjct: 433 KRTSSPPRKTRRLSPSASPPRR---RHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSP 489

Query: 469 TRRSGP-R*HRSPRCRESPHQHP 404
            R SG    H+    RESP   P
Sbjct: 490 GRTSGKVTKHKGTEKRESPSPAP 512

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 67/240 (27%), Positives = 85/240 (34%), Gaps = 49/240 (20%)
 Frame = -1

Query: 973  RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRC---- 806
            RR    R  P PPR   R R P   RRRSS     S   +S  RS+S  +  P R     
Sbjct: 381  RRRTPPRRMPPPPRHR-RSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPP 439

Query: 805  RRRRRQRRSQ*P-----RTASPAAQRPR-RGPPAPCSRGRDRGRRPCGAAAGCGGGR--- 653
            R+ RR   S  P     R +SPA   P+ R  P P    R R  R    + G   G+   
Sbjct: 440  RKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSR-VSVSPGRTSGKVTK 498

Query: 652  ---------PEAARRQGSARLCPA---------------QRRSPRR*AQTCSPQKSHQRK 545
                     P  A +     L  +               QRR  RR  Q  S +    ++
Sbjct: 499  HKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSEDERPKR 558

Query: 544  SHI---------RHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSP---RCRESPHQHPP 401
            SH+         RH    S      +R +++    RR  P    SP   R R SP   PP
Sbjct: 559  SHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRRRRRSP----SPPPARRRRSPSPAPP 614

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 61/213 (28%), Positives = 82/213 (37%), Gaps = 16/213 (7%)
 Frame = -1

Query: 943  SPPRAAT---RPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ* 773
            SP R+A+   R R+  T  RR  RRR  S      RRS S     P     RRR+  +  
Sbjct: 573  SPSRSASPSPRKRQKETSPRR--RRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPP 630

Query: 772  PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSP 593
            PR  +P+   PRR  P+P        RR   +        P   RR  S    P +R SP
Sbjct: 631  PRRRTPSPP-PRRRSPSPRRYSPPIQRRYSPS--------PPPKRRTASPPPPPKRRASP 681

Query: 592  -----RR*AQTCSPQKSHQRKSHIRHRSCHSIRTRH--------SRRMRQSWDHTRRSGP 452
                 RR + +  P+   QR   +  R   S+ ++H        S R  +S    +R  P
Sbjct: 682  SPPPKRRVSHSPPPK---QRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 738

Query: 451  R*HRSPRCRESPHQHPPEFQSAAGGARSCWQLP 353
                SPR R      PP  +  A  +    Q P
Sbjct: 739  ----SPRPRAPQTSSPPPVRRGASASPQGRQSP 767

 Score = 37.7 bits (86), Expect = 0.30
 Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
 Frame = -1

Query: 613 PAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMR---QSWDHTRRSGPR*H 443
           P+  ++ ++  +   P+   + KS  R RS     TR  RR R   +S+   RR  PR  
Sbjct: 318 PSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRR 377

Query: 442 RSPRCRESPHQHPP 401
            SPR R  P + PP
Sbjct: 378 PSPRRRTPPRRMPP 391

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 55/184 (29%), Positives = 70/184 (37%), Gaps = 21/184 (11%)
 Frame = -1

Query: 967  PAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTS---HRRSQSRCRSCPYRCRRR 797
            PA  R  PSP   A  P  P   RRR S   P   R  S    RRS S  R  P   +RR
Sbjct: 602  PARRRRSPSP---APPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP-PIQRR 657

Query: 796  RRQRRSQ*PRTASPAAQRPRRGPPAPCSRGR--------------DRGRRPCGAAAGCGG 659
                     RTASP     RR  P+P  + R               + R P  ++    G
Sbjct: 658  YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKG 717

Query: 658  GRPEAARRQGSARLCPAQRRSPR---R*AQTCSPQKSHQRKS-HIRHRSCHSIRTRHSRR 491
              P  + R+  +   P +R SP    R  QT SP    +  S   + R   S  TR  RR
Sbjct: 718  SSPGRSTREARSPQ-PNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 776

Query: 490  MRQS 479
            + ++
Sbjct: 777  VSRT 780



EST assemble image


clone accession position
1 CM075e12_r AV391640 1 438
2 MX019b07_r BP086869 45 550
3 MX034a02_r BP087412 301 682
4 LC031f04_r AV621130 441 973
5 MX065e09_r BP088636 520 860




Chlamydomonas reinhardtii
Kazusa DNA Research Institute