Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001655A_C01 KCC001655A_c01
(973 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00057775.1| COG1205: Distinct helicase family with a uniq... 65 2e-09
ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ... 63 7e-09
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 62 1e-08
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 62 1e-08
ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix prote... 62 2e-08
>ref|ZP_00057775.1| COG1205: Distinct helicase family with a unique C-terminal domain
including a metal-binding cysteine cluster [Thermobifida
fusca]
Length = 1958
Score = 65.1 bits (157), Expect = 2e-09
Identities = 83/265 (31%), Positives = 106/265 (39%), Gaps = 8/265 (3%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATR-PRRPATIRRRSSRRRPRSC----RCTSHRRSQSRCRSCPYR 809
RRPAA P A R P RPA +RRR RRR R C R HR ++ R R R
Sbjct: 82 RRPAARHRRDRRPAVAGRGPGRPARLRRRGPRRRRRLCPRPRRTPRHRAARPRLRRTGPR 141
Query: 808 CRRRRRQRRSQ*PRTASPAAQRPRRGPP--APCSRGRDRGRRPCGAAAGCGGGRPEAARR 635
+R R+ RT + R R GP A RGR +RP AA RP AAR
Sbjct: 142 RQRPHPHRQRPGRRTPARPGHRGRGGPAVAAAARRGRPGHQRP--AAPHPHRPRPAAARA 199
Query: 634 QGSARLCPAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSG 455
+ +A AQ R+ RR + + R+ R R R S + R + + G
Sbjct: 200 RRTAGGAGAQLRARRRATAGRRRRPARPRRPLRRLRRTPRPHARGSGQGRVAGRRSGAPG 259
Query: 454 PR*HRSP-RCRESPHQHPPEFQSAAGGARSCWQLPDCCSPRGR*GKLCVRPRQDRRPGEW 278
R P R P + + ++A G P G RP DRR G
Sbjct: 260 AAGRRQPLPGRPRPVRGAQQHRAAQGAL-----------PGGH------RPEADRR-GVR 301
Query: 277 PLQVPKQGPSCSCQPFRY*APAPAR 203
P P++ P +P R P PAR
Sbjct: 302 P--APRRLPDSGTRPDRQPPPRPAR 324
Score = 64.7 bits (156), Expect = 2e-09
Identities = 68/201 (33%), Positives = 83/201 (40%), Gaps = 17/201 (8%)
Frame = -1
Query: 922 RPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQR 743
RP RPA R +RRRP + R + R R R++ + PR P +R
Sbjct: 13 RPHRPA---RGPARRRPAG---GAAGRGRPVVGGGVARLARPARRQPAHLPRARRPRLRR 66
Query: 742 PRRGP--PAPCSRGR-------DRGRRPCGAAAGCGGGRPEAARRQG---SARLCPAQRR 599
PR G P P GR R RRP A AG G GRP RR+G RLCP RR
Sbjct: 67 PRGGAALPGPRRGGRRRPAARHRRDRRP--AVAGRGPGRPARLRRRGPRRRRRLCPRPRR 124
Query: 598 SPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRES 419
+PR A + R++ R + H R R RR H R GP + R
Sbjct: 125 TPRHRA-----ARPRLRRTGPRRQRPHPHRQRPGRRTPARPGHRGRGGPAVAAAARRGRP 179
Query: 418 PHQ-----HPPEFQSAAGGAR 371
HQ HP + AA AR
Sbjct: 180 GHQRPAAPHPHRPRPAAARAR 200
Score = 35.4 bits (80), Expect = 1.5
Identities = 37/128 (28%), Positives = 49/128 (37%), Gaps = 6/128 (4%)
Frame = -1
Query: 898 RRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQRPRRGPPAP 719
RR+ RPR R R+ +R RR R PR + RP R PP
Sbjct: 263 RRQPLPGRPRPVRGAQQHRAAQGALPGGHRPEADRRGVRPA-PRRLPDSGTRPDRQPPPR 321
Query: 718 CSRGRDRGRRPCGAAAGCGG-GRPEAARRQGSARLCPAQ-----RRSPRR*AQTCSPQKS 557
+R R RP A GRP R + PA RR PR + P+++
Sbjct: 322 PARVLARPARPVRRAGHRRPPGRPGRGRLPTAGGALPAGVGGTGRRGPRPRRRRPRPRRT 381
Query: 556 HQRKSHIR 533
H R++ R
Sbjct: 382 HPRRNRTR 389
>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
[Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
elegans RSR-1 protein (corresponding sequence F28D9.1)
[Caenorhabditis elegans]
Length = 601
Score = 63.2 bits (152), Expect = 7e-09
Identities = 66/199 (33%), Positives = 89/199 (44%), Gaps = 13/199 (6%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCT--SHRRSQSRCRSCPYRCRR 800
RR + P+P RA +R + P RR RR P + + + +R++SR +S P RR
Sbjct: 320 RRSPSQSKSPAPKRAKSRSKSPPAPARR--RRSPSASKSPPPAPKRAKSRSKSPP--ARR 375
Query: 799 RRRQRRSQ*PRTASPAAQRPRRGP-----PAPCSRGRDRGRRPCGAAAGCGGGRPEAARR 635
RR S+ SP A R RR P PAP R RR +A P+ A+
Sbjct: 376 RRSPSASK-----SPPAPRRRRSPSKSRSPAP-KREIPPARRRRSPSASKSPPAPKRAKS 429
Query: 634 QGSARLCPAQRRSPRR*AQTC-----SPQKSHQRKSHIRHRSCHSIRTRHSRRMRQ-SWD 473
+ + P +RRSP + SP KS Q R RS ++R RR R +
Sbjct: 430 RSKSPPAPRRRRSPSQSKSPAPRRRRSPSKSPQAPR--RRRSPSGSKSRSPRRRRSPAAA 487
Query: 472 HTRRSGPR*HRSPRCRESP 416
RR P+ RSPR R SP
Sbjct: 488 PRRRQSPQRRRSPRRRRSP 506
Score = 49.7 bits (117), Expect = 8e-05
Identities = 67/220 (30%), Positives = 88/220 (39%), Gaps = 25/220 (11%)
Frame = -1
Query: 973 RRPAATR-PCPSPPRAATRPRRPATIRRRSS-----------RRRPRSCRCTS------- 851
R P+A++ P P+P RA +R + P RRRS RR P R +
Sbjct: 349 RSPSASKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPP 408
Query: 850 --HRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGA 677
RRS S +S P R + R + SP A R RR P S R R P +
Sbjct: 409 ARRRRSPSASKSPPAPKRAKSRSK--------SPPAPRRRRSPSQSKSPAPRRRRSPSKS 460
Query: 676 AAGCGGGRPEAARRQ----GSARLCPAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIR 509
P+A RR+ GS P +RRSP +P++ R+S R RS
Sbjct: 461 --------PQAPRRRRSPSGSKSRSPRRRRSP-----AAAPRR---RQSPQRRRS----- 499
Query: 508 TRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQS 389
RR S RS P R PR ++S Q P +S
Sbjct: 500 --PRRRRSPSSSSRSRSPPPPPRRPR-QDSEQQAPVAVKS 536
Score = 36.6 bits (83), Expect = 0.66
Identities = 53/231 (22%), Positives = 76/231 (31%)
Frame = -1
Query: 925 TRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTASPAAQ 746
T P R +R R S R T RR+ S RR + R + P
Sbjct: 161 TGPAREKAVRDDRIPARALSPRKTPPRRNASPGGDGGGGSPAARRGGSAGNRRRSPPRRG 220
Query: 745 RPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPRR*AQTCSP 566
PRRG P +R RR G+ GG R + RR RR +
Sbjct: 221 SPRRGSPRRDTRRSPPRRR--GSPPARGGDRRD--------------RREDRRPVRDEKE 264
Query: 565 QKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQSA 386
++ R+ I + H + + + PR RSP +S PP +
Sbjct: 265 REEESRRREIERKKRHEEAELRQKAIASVAARAKSGSPRRRRSPSASKS----PPPARRR 320
Query: 385 AGGARSCWQLPDCCSPRGR*GKLCVRPRQDRRPGEWPLQVPKQGPSCSCQP 233
++S P R + R R+ + P PK+ S S P
Sbjct: 321 RSPSQSKSPAPKRAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSP 371
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 62.0 bits (149), Expect = 1e-08
Identities = 68/202 (33%), Positives = 86/202 (41%), Gaps = 9/202 (4%)
Frame = -1
Query: 943 SPPRAATRPRRPATIRRRSSR--RRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQ--RRSQ 776
+P R +R R PA R RS RR RS T RR +SR RS P R R R R RRS
Sbjct: 489 TPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRR-RSRTRS-PVRRRSRSRSQARRSG 546
Query: 775 *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRS 596
R+ +PA + R P RGR R R P +A P ARR S PA+RRS
Sbjct: 547 RSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTP--ARRGRSRSRTPARRRS 604
Query: 595 PRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRR--MRQSWDHTRRSGPR*H---RSPR 431
R +SH R R RS S ++ R R+S ++ + H R R
Sbjct: 605 RSR--SLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSR 662
Query: 430 CRESPHQHPPEFQSAAGGARSC 365
SP + + G+ C
Sbjct: 663 SLSSPRSKAKSLRRSLSGSSPC 684
Score = 57.0 bits (136), Expect = 5e-07
Identities = 54/186 (29%), Positives = 77/186 (41%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
R+ + +R P+P + + PAT RR S S RRS+S R+ P RR R
Sbjct: 1709 RKRSRSRTSPAPWKRSRSRASPATHRRSRS-----ITPLISRRRSRS--RTSPVSRRRSR 1761
Query: 793 RQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLC 614
R + ASP ++R R P +R R R R P + P RR+ +R
Sbjct: 1762 SVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRS--RSRTPPVTRRRSRSRTP 1819
Query: 613 PAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSP 434
P RR R + ++S R S + R S + +RR +S R+ P R
Sbjct: 1820 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS-----RTSPVTRRRS 1874
Query: 433 RCRESP 416
R R P
Sbjct: 1875 RSRTPP 1880
Score = 55.8 bits (133), Expect = 1e-06
Identities = 65/214 (30%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Frame = -1
Query: 943 SPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQS----RCRSCPYRCRRRRRQRRSQ 776
+P A R R PAT R RS R P H RS+S R RS + R QRR +
Sbjct: 378 TPSHRAGRSRSPATKRGRSRSRTPTK---RGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 434
Query: 775 *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSAR-LCPAQRR 599
P R R SR RGR + A G R R+G +R PA+RR
Sbjct: 435 SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 494
Query: 598 S-----PRR*AQTCSP------------QKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDH 470
S RR +++ +P ++ + +S +R RS + R S R R S
Sbjct: 495 SRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRSGRSR-SRTP 553
Query: 469 TRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARS 368
RRSG R+P R P +SA +R+
Sbjct: 554 ARRSGRSRSRTPARRGRSRSRTPARRSARSRSRT 587
Score = 49.7 bits (117), Expect = 8e-05
Identities = 57/196 (29%), Positives = 79/196 (40%), Gaps = 10/196 (5%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATI-RRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRR 797
R P+ + P P+ ++R RR + R +++ RR RS +SR RS + R
Sbjct: 1586 RSPSVSSPEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTT 1645
Query: 796 RRQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGG------GRPEAARR 635
RR+ RS ++ S QR R SR R RR G+ R + RR
Sbjct: 1646 RRRDRSGSSQSTSRRRQRSR-------SRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRR 1698
Query: 634 QGSARLCPAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIR---TRHSRRMRQSWDHTR 464
+G +R R+ R ++S R S HR SI +R R R S R
Sbjct: 1699 RGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSITPLISRRRSRSRTSPVSRR 1758
Query: 463 RSGPR*HRSPRCRESP 416
RS R R R SP
Sbjct: 1759 RSRSVNRRRSRSRASP 1774
Score = 48.1 bits (113), Expect = 2e-04
Identities = 57/177 (32%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
Frame = -1
Query: 934 RAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*P----- 770
R +R R PA R RS R P R S R+ +R RS R RR + RS+ P
Sbjct: 471 RGRSRSRTPAR-RGRSRSRTP--ARRRSRSRTPARRRS-RSRTPARRGRSRSRTPTRRRS 526
Query: 769 RTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPR 590
RT SP +R R A S GR R R P A G R R+G +R RRS R
Sbjct: 527 RTRSPVRRRSRSRSQARRS-GRSRSRTP---ARRSGRSRSRTPARRGRSRSRTPARRSAR 582
Query: 589 R*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRES 419
++T + + + ++ R RS R R ++ RSG R + R S
Sbjct: 583 SRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTS 639
Score = 44.7 bits (104), Expect = 0.002
Identities = 56/204 (27%), Positives = 82/204 (39%), Gaps = 4/204 (1%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
+RP +R + R +R R RS R RS T RR +SR R+ RR
Sbjct: 439 QRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRT-----PARR 493
Query: 793 RQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLC 614
R R+ +PA +R R PA RGR R R P + +R + AR
Sbjct: 494 RS------RSRTPARRRSRSRTPA--RRGRSRSRTPTRRRSRTRSPVRRRSRSRSQARRS 545
Query: 613 PAQR-RSP-RR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HR 440
R R+P RR ++ S + + +S R + S R+R R+ +R R R
Sbjct: 546 GRSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTPARRGRSRSRTPARRRSR 605
Query: 439 SPRC--RESPHQHPPEFQSAAGGA 374
S R H P+ + +G +
Sbjct: 606 SRSLVRRGRSHSRTPQRRGRSGSS 629
Score = 41.6 bits (96), Expect = 0.021
Identities = 35/93 (37%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
RR + +R P PR +R R P IRRRS R PR+ R +S RS P RR
Sbjct: 1883 RRRSRSRT-PLLPRKRSRSRSPLAIRRRSRSRTPRAA-----RGKRSLTRSPPAIRRRSA 1936
Query: 793 RQRRSQ*PRTASPAAQRPRRG---PPAPCSRGR 704
S R+A+P A R G PP S R
Sbjct: 1937 SGSSSDRSRSATPPATRNHSGSRTPPVALSSSR 1969
Score = 40.0 bits (92), Expect = 0.060
Identities = 56/201 (27%), Positives = 77/201 (37%), Gaps = 25/201 (12%)
Frame = -1
Query: 934 RAATRPRRPATIRRRSSRRRPRSCR-CTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTAS 758
++ T P RRRSSR P R RRS+S S R R R+RRS P +S
Sbjct: 1541 KSRTPP------RRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRS--PSVSS 1592
Query: 757 P------AAQRPRRGPPAP-----CSRGRDRGRRPCGAAAGCGGGRPEAAR------RQG 629
P + R RR +P RGR +P G R E R R G
Sbjct: 1593 PEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSG 1652
Query: 628 SARLCPAQRRSPRR*AQTCSPQK---SHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRS 458
S++ +R+ R ++ ++ + +S R S + R R R +RS
Sbjct: 1653 SSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 1712
Query: 457 GPR*HRSP----RCRESPHQH 407
R +P R R SP H
Sbjct: 1713 RSRTSPAPWKRSRSRASPATH 1733
Score = 38.1 bits (87), Expect = 0.23
Identities = 88/347 (25%), Positives = 129/347 (36%), Gaps = 25/347 (7%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPA----TIRRRSSRRRPRSCRCTSHR-----RSQSRCRS 821
+ +A RP PSP R++T P PA + + RP + +S S R
Sbjct: 245 KEKSAVRPSPSPERSSTGPELPAPTPLLVEQHDDSPRPLAAIPSSQEPVNPSSEASPTRG 304
Query: 820 C-PYRCRRRRRQRRSQ*PRTASP--------AAQRPR--RGPPAPCSRGRDRGRRPCGAA 674
C P + + Q S SP A+ P + PAP SR R+ P
Sbjct: 305 CSPPKSPEKPPQSTSSESCPPSPQPTKVSRHASSSPESLKPTPAPGSR-REISSSPTSKN 363
Query: 673 AGCGGGRPEAARRQGSARLCPAQRRSPRR*AQT---CSPQKSHQRKSHIRHRSCHSIRTR 503
G A+R S P+ R R T S ++ ++ H R RS R+R
Sbjct: 364 RSHG-----RAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRRSR 418
Query: 502 HSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARSCWQLPDCCSPRGR*G 323
++R +S RR R + P S + +A RS + P + RGR
Sbjct: 419 SAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSP---ATRGR-- 473
Query: 322 KLCVRPRQDRRPGEWPLQVPKQGPSCSCQPFRY*APA--PARFGCGTMRCCASKD*ST*T 149
R R R G + P + S S P R + + PAR G R + T +
Sbjct: 474 ---SRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPTRRRSRTRS 530
Query: 148 RWIWSRYQTGTFS*KRRTML*CSTRPTRQIGEANARCRLARWMKRSR 8
R ++ + S RR+ S P R+ G + +R R RSR
Sbjct: 531 P---VRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSR 574
Score = 33.9 bits (76), Expect = 4.3
Identities = 49/186 (26%), Positives = 72/186 (38%)
Frame = -1
Query: 946 PSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PR 767
P+ +R R PA R RS R P + R ++SR R+ R R R R
Sbjct: 553 PARRSGRSRSRTPAR-RGRSRSRTP------ARRSARSRSRTPARRGRSRSR-------- 597
Query: 766 TASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPRR 587
+PA +R R + RGR R P G G E + R S RR
Sbjct: 598 --TPARRRSR--SRSLVRRGRSHSRTP--QRRGRSGSSSERKNK---------SRTSQRR 642
Query: 586 *AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQH 407
SP+ S R RS S R++ ++ +R+S + + ++P R
Sbjct: 643 SRSNSSPEMKKSHVSSRRSRSLSSPRSK-AKSLRRSLSGSSPCPKQKSQTPTRRSRSGSS 701
Query: 406 PPEFQS 389
PP+ +S
Sbjct: 702 PPKQKS 707
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 62.0 bits (149), Expect = 1e-08
Identities = 68/202 (33%), Positives = 86/202 (41%), Gaps = 9/202 (4%)
Frame = -1
Query: 943 SPPRAATRPRRPATIRRRSSR--RRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQ--RRSQ 776
+P R +R R PA R RS RR RS T RR +SR RS P R R R R RRS
Sbjct: 489 TPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARR-RSRTRS-PVRRRSRSRSQARRSG 546
Query: 775 *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRS 596
R+ +PA + R P RGR R R P +A P ARR S PA+RRS
Sbjct: 547 RSRSRTPARRSGRSRSRTPARRGRSRSRTPARRSARSRSRTP--ARRGRSRSRTPARRRS 604
Query: 595 PRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRR--MRQSWDHTRRSGPR*H---RSPR 431
R +SH R R RS S ++ R R+S ++ + H R R
Sbjct: 605 RSR--SLVRRGRSHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSHVSSRRSR 662
Query: 430 CRESPHQHPPEFQSAAGGARSC 365
SP + + G+ C
Sbjct: 663 SLSSPRSKAKSLRRSLSGSSPC 684
Score = 60.1 bits (144), Expect = 6e-08
Identities = 54/186 (29%), Positives = 77/186 (41%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
R+ + +R P+P + + PAT RR SR S R +SR R+ P RR R
Sbjct: 1709 RKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLIS-------RRRSRSRTSPVSRRRSR 1761
Query: 793 RQRRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLC 614
R + ASP ++R R P +R R R R P + P RR+ +R
Sbjct: 1762 SVNRRRSRSRASPVSRRRSRSRTPPVTRRRSRSRTPTRRRS--RSRTPPVTRRRSRSRTP 1819
Query: 613 PAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSP 434
P RR R + ++S R S + R S + +RR +S R+ P R
Sbjct: 1820 PVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRS-----RTSPVTRRRS 1874
Query: 433 RCRESP 416
R R P
Sbjct: 1875 RSRTPP 1880
Score = 55.8 bits (133), Expect = 1e-06
Identities = 65/214 (30%), Positives = 87/214 (40%), Gaps = 22/214 (10%)
Frame = -1
Query: 943 SPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQS----RCRSCPYRCRRRRRQRRSQ 776
+P A R R PAT R RS R P H RS+S R RS + R QRR +
Sbjct: 378 TPSHRAGRSRSPATKRGRSRSRTPTK---RGHSRSRSPQWRRSRSAQRWGKSRSPQRRGR 434
Query: 775 *PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSAR-LCPAQRR 599
P R R SR RGR + A G R R+G +R PA+RR
Sbjct: 435 SRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRR 494
Query: 598 S-----PRR*AQTCSP------------QKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDH 470
S RR +++ +P ++ + +S +R RS + R S R R S
Sbjct: 495 SRSRTPARRRSRSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSQARRSGRSR-SRTP 553
Query: 469 TRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARS 368
RRSG R+P R P +SA +R+
Sbjct: 554 ARRSGRSRSRTPARRGRSRSRTPARRSARSRSRT 587
Score = 54.7 bits (130), Expect = 2e-06
Identities = 62/198 (31%), Positives = 80/198 (40%), Gaps = 14/198 (7%)
Frame = -1
Query: 952 PCPSP---PRAATRPRRPATIRRRSSRRRPR--SCRCTSHRRSQSRCRSCPYRCRRRRRQ 788
P P P R+ +R RR T R++RRR R S + TS RR +SR RS R RR+
Sbjct: 1623 PSPKPRGLQRSRSRSRREKT---RTTRRRDRSGSSQSTSRRRQRSRSRS-----RVTRRR 1674
Query: 787 RRSQ*PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPA 608
R + SP Q R R R R R P + A ++ +R PA
Sbjct: 1675 RGGSGYHSRSPTRQESSR---TSSRRRRGRSRTPLTSRKRSRSRTSPAPWKRSRSRASPA 1731
Query: 607 QRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR------- 449
R R S ++S R S + R S+ R S R R S RRS R
Sbjct: 1732 THRRSRSRTPLISRRRSRSRTSPVSRRRSRSVNRRRS-RSRASPVSRRRSRSRTPPVTRR 1790
Query: 448 --*HRSPRCRESPHQHPP 401
R+P R S + PP
Sbjct: 1791 RSRSRTPTRRRSRSRTPP 1808
Score = 48.1 bits (113), Expect = 2e-04
Identities = 57/177 (32%), Positives = 75/177 (42%), Gaps = 5/177 (2%)
Frame = -1
Query: 934 RAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ*P----- 770
R +R R PA R RS R P R S R+ +R RS R RR + RS+ P
Sbjct: 471 RGRSRSRTPAR-RGRSRSRTP--ARRRSRSRTPARRRS-RSRTPARRGRSRSRTPARRRS 526
Query: 769 RTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSPR 590
RT SP +R R A S GR R R P A G R R+G +R RRS R
Sbjct: 527 RTRSPVRRRSRSRSQARRS-GRSRSRTP---ARRSGRSRSRTPARRGRSRSRTPARRSAR 582
Query: 589 R*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSPRCRES 419
++T + + + ++ R RS R R ++ RSG R + R S
Sbjct: 583 SRSRTPARRGRSRSRTPARRRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKSRTS 639
Score = 41.6 bits (96), Expect = 0.021
Identities = 35/93 (37%), Positives = 42/93 (44%), Gaps = 3/93 (3%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRR 794
RR + +R P PR +R R P IRRRS R PR+ R +S RS P RR
Sbjct: 1883 RRRSRSRT-PLLPRKRSRSRSPLAIRRRSRSRTPRAA-----RGKRSLTRSPPAIRRRSA 1936
Query: 793 RQRRSQ*PRTASPAAQRPRRG---PPAPCSRGR 704
S R+A+P A R G PP S R
Sbjct: 1937 SGSSSDRSRSATPPATRNHSGSRTPPVALSSSR 1969
Score = 40.8 bits (94), Expect = 0.035
Identities = 87/349 (24%), Positives = 132/349 (36%), Gaps = 27/349 (7%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPA----TIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYR- 809
+ +A RP PSP R++T P PA + + RP + +S + P R
Sbjct: 245 KEKSAVRPSPSPERSSTGPELPAPTPLLVEQHVDSPRPLAAIPSSQEPVNPSSEASPTRG 304
Query: 808 CRRRRRQRRSQ*PRTAS----PAAQRPRRG-------------PPAPCSRGRDRGRRPCG 680
C + + P++ S P + +P +G PAP SR R+ P
Sbjct: 305 CSPPKSPEKP--PQSTSSESCPPSPQPTKGSRHASSSPESLKPTPAPGSR-REISSSPTS 361
Query: 679 AAAGCGGGRPEAARRQGSARLCPAQRRSPRR*AQT---CSPQKSHQRKSHIRHRSCHSIR 509
G A+R S P+ R R T S ++ ++ H R RS R
Sbjct: 362 KNRSHG-----RAKRDKSHSHTPSHRAGRSRSPATKRGRSRSRTPTKRGHSRSRSPQWRR 416
Query: 508 TRHSRRMRQSWDHTRRSGPR*HRSPRCRESPHQHPPEFQSAAGGARSCWQLPDCCSPRGR 329
+R ++R +S RR R + P S + +A RS + P + RGR
Sbjct: 417 SRSAQRWGKSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSP---ATRGR 473
Query: 328 *GKLCVRPRQDRRPGEWPLQVPKQGPSCSCQPFRY*APA--PARFGCGTMRCCASKD*ST 155
R R R G + P + S S P R + + PAR G R A + T
Sbjct: 474 -----SRSRTPARRGRSRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRTPARRRSRT 528
Query: 154 *TRWIWSRYQTGTFS*KRRTML*CSTRPTRQIGEANARCRLARWMKRSR 8
+ R ++ + S RR+ S P R+ G + +R R RSR
Sbjct: 529 RSP---VRRRSRSRSQARRSGRSRSRTPARRSGRSRSRTPARRGRSRSR 574
Score = 39.7 bits (91), Expect = 0.078
Identities = 56/201 (27%), Positives = 77/201 (37%), Gaps = 25/201 (12%)
Frame = -1
Query: 934 RAATRPRRPATIRRRSSRRRPRSCR-CTSHRRSQSRCRSCPYRCRRRRRQRRSQ*PRTAS 758
++ T P RRRSSR P R RRS+S S R R R+RRS P +S
Sbjct: 1541 KSHTPP------RRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRS--PSVSS 1592
Query: 757 P------AAQRPRRGPPAP-----CSRGRDRGRRPCGAAAGCGGGRPEAAR------RQG 629
P + R RR +P RGR +P G R E R R G
Sbjct: 1593 PEPTEKSRSSRRRRSVSSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSG 1652
Query: 628 SARLCPAQRRSPRR*AQTCSPQK---SHQRKSHIRHRSCHSIRTRHSRRMRQSWDHTRRS 458
S++ +R+ R ++ ++ + +S R S + R R R +RS
Sbjct: 1653 SSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRTPLTSRKRS 1712
Query: 457 GPR*HRSP----RCRESPHQH 407
R +P R R SP H
Sbjct: 1713 RSRTSPAPWKRSRSRASPATH 1733
Score = 38.5 bits (88), Expect = 0.17
Identities = 60/203 (29%), Positives = 78/203 (37%), Gaps = 30/203 (14%)
Frame = -1
Query: 943 SPPRAATRPRRPATIRRRSSRRRPRSCRCTSH---------RRSQSRCRSCPYRCRRRRR 791
+PPR + P R+ RR RS + RRS S P R R
Sbjct: 1544 TPPRRRSSRSSPELTRKARVSRRSRSASSSPEIRSRTPPRRRRSPSVSSPEPTEKSRSSR 1603
Query: 790 QRRS-Q*PRTASPAAQRPRRG-PPAPCSRGRDRGR--------RPCGAAAGCGGGRPEAA 641
+RRS PRT + + RRG P+P RG R R R G + +
Sbjct: 1604 RRRSVSSPRTKTTS----RRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSR 1659
Query: 640 RRQGS---ARLCPAQR-------RSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRR 491
RRQ S +R+ +R RSP R Q S S +R+ R R+R SR
Sbjct: 1660 RRQRSRSRSRVTRRRRGGSGYHSRSPTR--QESSRTSSRRRRGRSRTPLTSRKRSR-SRT 1716
Query: 490 MRQSWDHTR-RSGPR*HRSPRCR 425
W +R R+ P HR R R
Sbjct: 1717 SPAPWKRSRSRASPATHRRSRSR 1739
>ref|XP_233556.2| similar to Ser/Arg-related nuclear matrix protein;
plenty-of-prolines-101; serine/arginine repetitive
matrix protein 1 [Rattus norvegicus]
Length = 958
Score = 61.6 bits (148), Expect = 2e-08
Identities = 67/203 (33%), Positives = 85/203 (41%), Gaps = 22/203 (10%)
Frame = -1
Query: 946 PSPPRAATRPR---RPATIRRRSSRRRPRSCRCTSHRRSQ--SRCRSCPYRCRRRRRQRR 782
PSP + + + + RP + R SR R RS R SH R + R RS Y RRR RR
Sbjct: 318 PSPEKNSKKEKEKTRPRSRSRSKSRSRTRS-RSPSHTRPRRRHRSRSRSYSPRRRPSPRR 376
Query: 781 SQ*PRTASPAAQRPRRGPPAP---CSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCP 611
PR +P PRR PP P SR R RR A+ ++R + + P
Sbjct: 377 RPSPRRRTP----PRRMPPPPRHRRSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPP 432
Query: 610 AQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSI----RTRHS---------RRMRQSWDH 470
+ SP R + SP S R+ RHR +TRHS R+ R S
Sbjct: 433 KRTSSPPRKTRRLSPSASPPRR---RHRPSSPATPPPKTRHSPTPQQSNRARKSRVSVSP 489
Query: 469 TRRSGP-R*HRSPRCRESPHQHP 404
R SG H+ RESP P
Sbjct: 490 GRTSGKVTKHKGTEKRESPSPAP 512
Score = 45.4 bits (106), Expect = 0.001
Identities = 67/240 (27%), Positives = 85/240 (34%), Gaps = 49/240 (20%)
Frame = -1
Query: 973 RRPAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRC---- 806
RR R P PPR R R P RRRSS S +S RS+S + P R
Sbjct: 381 RRRTPPRRMPPPPRHR-RSRSPGRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPP 439
Query: 805 RRRRRQRRSQ*P-----RTASPAAQRPR-RGPPAPCSRGRDRGRRPCGAAAGCGGGR--- 653
R+ RR S P R +SPA P+ R P P R R R + G G+
Sbjct: 440 RKTRRLSPSASPPRRRHRPSSPATPPPKTRHSPTPQQSNRARKSR-VSVSPGRTSGKVTK 498
Query: 652 ---------PEAARRQGSARLCPA---------------QRRSPRR*AQTCSPQKSHQRK 545
P A + L + QRR RR Q S + ++
Sbjct: 499 HKGTEKRESPSPAPKPRKVELSESEEDKGSKMAAADSVQQRRQYRRQNQQSSSEDERPKR 558
Query: 544 SHI---------RHRSCHSIRTRHSRRMRQSWDHTRRSGPR*HRSP---RCRESPHQHPP 401
SH+ RH S +R +++ RR P SP R R SP PP
Sbjct: 559 SHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRRRRRSP----SPPPARRRRSPSPAPP 614
Score = 39.3 bits (90), Expect = 0.10
Identities = 61/213 (28%), Positives = 82/213 (37%), Gaps = 16/213 (7%)
Frame = -1
Query: 943 SPPRAAT---RPRRPATIRRRSSRRRPRSCRCTSHRRSQSRCRSCPYRCRRRRRQRRSQ* 773
SP R+A+ R R+ T RR RRR S RRS S P RRR+ +
Sbjct: 573 SPSRSASPSPRKRQKETSPRR--RRRSPSPPPARRRRSPSPAPPPPPPPPPRRRRSPTPP 630
Query: 772 PRTASPAAQRPRRGPPAPCSRGRDRGRRPCGAAAGCGGGRPEAARRQGSARLCPAQRRSP 593
PR +P+ PRR P+P RR + P RR S P +R SP
Sbjct: 631 PRRRTPSPP-PRRRSPSPRRYSPPIQRRYSPS--------PPPKRRTASPPPPPKRRASP 681
Query: 592 -----RR*AQTCSPQKSHQRKSHIRHRSCHSIRTRH--------SRRMRQSWDHTRRSGP 452
RR + + P+ QR + R S+ ++H S R +S +R P
Sbjct: 682 SPPPKRRVSHSPPPK---QRSPPVTKRRSPSLSSKHRKGSSPGRSTREARSPQPNKRHSP 738
Query: 451 R*HRSPRCRESPHQHPPEFQSAAGGARSCWQLP 353
SPR R PP + A + Q P
Sbjct: 739 ----SPRPRAPQTSSPPPVRRGASASPQGRQSP 767
Score = 37.7 bits (86), Expect = 0.30
Identities = 24/74 (32%), Positives = 35/74 (46%), Gaps = 3/74 (4%)
Frame = -1
Query: 613 PAQRRSPRR*AQTCSPQKSHQRKSHIRHRSCHSIRTRHSRRMR---QSWDHTRRSGPR*H 443
P+ ++ ++ + P+ + KS R RS TR RR R +S+ RR PR
Sbjct: 318 PSPEKNSKKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRRPSPRRR 377
Query: 442 RSPRCRESPHQHPP 401
SPR R P + PP
Sbjct: 378 PSPRRRTPPRRMPP 391
Score = 33.9 bits (76), Expect = 4.3
Identities = 55/184 (29%), Positives = 70/184 (37%), Gaps = 21/184 (11%)
Frame = -1
Query: 967 PAATRPCPSPPRAATRPRRPATIRRRSSRRRPRSCRCTS---HRRSQSRCRSCPYRCRRR 797
PA R PSP A P P RRR S P R S RRS S R P +RR
Sbjct: 602 PARRRRSPSP---APPPPPPPPPRRRRSPTPPPRRRTPSPPPRRRSPSPRRYSP-PIQRR 657
Query: 796 RRQRRSQ*PRTASPAAQRPRRGPPAPCSRGR--------------DRGRRPCGAAAGCGG 659
RTASP RR P+P + R + R P ++ G
Sbjct: 658 YSPSPPPKRRTASPPPPPKRRASPSPPPKRRVSHSPPPKQRSPPVTKRRSPSLSSKHRKG 717
Query: 658 GRPEAARRQGSARLCPAQRRSPR---R*AQTCSPQKSHQRKS-HIRHRSCHSIRTRHSRR 491
P + R+ + P +R SP R QT SP + S + R S TR RR
Sbjct: 718 SSPGRSTREARSPQ-PNKRHSPSPRPRAPQTSSPPPVRRGASASPQGRQSPSPSTRPIRR 776
Query: 490 MRQS 479
+ ++
Sbjct: 777 VSRT 780