KCC001654A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001654A_C01 KCC001654A_c01
ATTCTAAGAGGTTTTATTCTAGGTCTGACCTTGCCCTAATTGACAGCCCGAGCGACTTGC
AACACCGTTCTCTCAACCAACTCGGCGAAGCAGCCTCAAGCCACGATGTCGCTGGCCGGC
AAAAACATCTTCGTCACTGGTGGCCTGGGCTTCATTGGCAGCCACACCGTGCTGGTGCTG
CTGGAGCATGGCGCCACCGTGCACCTCATCGACAACATGGCCAACAGCTTCGAGCGTGTG
TTTGAGCACATGAAGAAGCTGGCCGGTGACAAGGCCGACAAGATGAAGTTCACCAAGTGC
GACATCAACGACAAGGAGACCCTGACCACGATCTTCGAGAAGGAGCACTTTGACTGCGTC
ATCCACTTTGCCGGCTACAAGGCTGTGGGCGAGTCGGTGGACAAGCCGCTCGAGTACTAC
CACAACAACTTCGTGGGCACCGTGATCCTGCTGGAGGTCATGCGCGCCCACAAGTGCAAG
AACATGGTGTTCAGCAGCAGCTGCACCGTGTACGGCATGCCCGATGAGGTGCCCATCACC
GAGTCCGCGCCGCTCAAGGCCATCTCCCCCTACGGCCGCACTAAGCTGTTCCAGGAGGAC
ATGTTCCGCGACCTGGCCGTGTCCGACAAGGACTGGCGCATCCTGCTGCTGCGCTACTTC
AACCCCATCGGCGCGCACCCCAGCGGCGAGCTGGGTGAGCACCCCGTGGGCATCCCCAAC
AACCTCATGCCGTACATCCAGCAGGTGGCTCTGGGCCAGCGCGAGTTCCTGCGTGTGTTT
GGCAACGACTACCCCACGCCCGACGGCACCGCCATCCGCGACTACATCCACGTCATGGAC
CTGGCGGAGGGCCACGTCAGCGCTGTGGTCAAGACCCTGGCCACCCCCGACCTGGGCTGC
ACGCCCATCAACCTGGGCACCGGCAAGGGCACGTCGGTGCTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001654A_C01 KCC001654A_c01
         (942 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_192834.1| UDP-glucose 4-epimerase (UDP-galactose 4-epimer...   340  3e-92
ref|NP_194123.1| UDP-glucose 4-epimerase (UDP-galactose 4-epimer...   340  3e-92
gb|AAM62752.1| UDP-galactose 4-epimerase-like protein [Arabidops...   339  3e-92
sp|Q9SN58|GAE2_ARATH Probable UDP-glucose 4-epimerase At4g10960 ...   339  3e-92
gb|AAM61178.1| UDPglucose 4-epimerase-like protein [Arabidopsis ...   339  5e-92

>ref|NP_192834.1| UDP-glucose 4-epimerase (UDP-galactose 4-epimerase)
           (Galactowaldenase), putative [Arabidopsis thaliana]
           gi|7437227|pir||T04291 probable UDPglucose 4-epimerase
           (EC 5.1.3.2) - Arabidopsis thaliana
           gi|4539370|emb|CAB40064.1| UDP-galactose
           4-epimerase-like protein [Arabidopsis thaliana]
           gi|7267794|emb|CAB81197.1| UDP-galactose
           4-epimerase-like protein [Arabidopsis thaliana]
           gi|17529138|gb|AAL38795.1| putative UDP-galactose
           4-epimerase [Arabidopsis thaliana]
           gi|21436233|gb|AAM51255.1| putative UDP-galactose
           4-epimerase [Arabidopsis thaliana]
           gi|22655248|gb|AAM98214.1| UDP-galactose
           4-epimerase-like protein [Arabidopsis thaliana]
          Length = 351

 Score =  340 bits (871), Expect = 3e-92
 Identities = 163/277 (58%), Positives = 209/277 (74%)
 Frame = +1

Query: 112 LAGKNIFVTGGLGFIGSHTVLVLLEHGATVHLIDNMANSFERVFEHMKKLAGDKADKMKF 291
           +  +N+ V+GG G+IGSHTVL LL  G +V ++DN+ NS     + +KKLA +  +++ F
Sbjct: 1   MMARNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSF 60

Query: 292 TKCDINDKETLTTIFEKEHFDCVIHFAGYKAVGESVDKPLEYYHNNFVGTVILLEVMRAH 471
            + D+ D+  L  IF +  FD VIHFAG KAVGESV+KPL YY+NN VGT+ LLEVM  H
Sbjct: 61  HQVDLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQH 120

Query: 472 KCKNMVFSSSCTVYGMPDEVPITESAPLKAISPYGRTKLFQEDMFRDLAVSDKDWRILLL 651
            CKN+VFSSS TVYG P EVP TE  P+ A++PYGRTKLF E++ RD+  SD +W+I+LL
Sbjct: 121 GCKNLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILL 180

Query: 652 RYFNPIGAHPSGELGEHPVGIPNNLMPYIQQVALGQREFLRVFGNDYPTPDGTAIRDYIH 831
           RYFNP+GAHPSG++GE P GIPNNLMP++QQVA+G+R  L VFGNDY T DGT +RDYIH
Sbjct: 181 RYFNPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIH 240

Query: 832 VMDLAEGHVSAVVKTLATPDLGCTPINLGTGKGTSVL 942
           V+DLA+GH++A+ K L    +GC   NLGTG GTSVL
Sbjct: 241 VIDLADGHIAALRK-LEDCKIGCEVYNLGTGNGTSVL 276

>ref|NP_194123.1| UDP-glucose 4-epimerase (UDP-galactose 4-epimerase)
           (Galactowaldenase), putative [Arabidopsis thaliana]
           gi|11386854|sp|Q9T0A7|GAE3_ARATH Probable UDP-glucose
           4-epimerase At4g23920 (Galactowaldenase) (UDP-galactose
           4-epimerase) gi|7437229|pir||T08911 UDPglucose
           4-epimerase (EC 5.1.3.2) T32A16.90 - Arabidopsis
           thaliana gi|4972096|emb|CAB43892.1| UDPglucose
           4-epimerase-like protein [Arabidopsis thaliana]
           gi|7269241|emb|CAB81310.1| UDPglucose 4-epimerase-like
           protein [Arabidopsis thaliana]
           gi|26452462|dbj|BAC43316.1| putative UDPglucose
           4-epimerase [Arabidopsis thaliana]
           gi|30793827|gb|AAP40366.1| putative UDPglucose
           4-epimerase [Arabidopsis thaliana]
          Length = 350

 Score =  340 bits (871), Expect = 3e-92
 Identities = 164/274 (59%), Positives = 206/274 (74%)
 Frame = +1

Query: 121 KNIFVTGGLGFIGSHTVLVLLEHGATVHLIDNMANSFERVFEHMKKLAGDKADKMKFTKC 300
           K++ VTGG G+IGSHTVL LLE G +  ++DN  NS     + +KKLAG+  +++ F + 
Sbjct: 3   KSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFHQV 62

Query: 301 DINDKETLTTIFEKEHFDCVIHFAGYKAVGESVDKPLEYYHNNFVGTVILLEVMRAHKCK 480
           D+ D+  L  IF +  FD VIHFAG KAVGESV+KPL YY+NN VGTV LLEVM  + CK
Sbjct: 63  DLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLLEVMAQYGCK 122

Query: 481 NMVFSSSCTVYGMPDEVPITESAPLKAISPYGRTKLFQEDMFRDLAVSDKDWRILLLRYF 660
           N+VFSSS TVYG P EVP TE +P+ A +PYGRTKLF E++ RD+  SD +W+I+LLRYF
Sbjct: 123 NLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYF 182

Query: 661 NPIGAHPSGELGEHPVGIPNNLMPYIQQVALGQREFLRVFGNDYPTPDGTAIRDYIHVMD 840
           NP+GAHPSG +GE P+G+PNNLMPY+QQVA+G+R  L VFG DY T DGT +RDYIHVMD
Sbjct: 183 NPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMD 242

Query: 841 LAEGHVSAVVKTLATPDLGCTPINLGTGKGTSVL 942
           LA+GH++A+ K L    + C   NLGTG GTSVL
Sbjct: 243 LADGHIAALRK-LDDLKISCEVYNLGTGNGTSVL 275

>gb|AAM62752.1| UDP-galactose 4-epimerase-like protein [Arabidopsis thaliana]
          Length = 348

 Score =  339 bits (870), Expect = 3e-92
 Identities = 163/274 (59%), Positives = 208/274 (75%)
 Frame = +1

Query: 121 KNIFVTGGLGFIGSHTVLVLLEHGATVHLIDNMANSFERVFEHMKKLAGDKADKMKFTKC 300
           +N+ V+GG G+IGSHTVL LL  G +V ++DN+ NS     + +KKLA +  +++ F + 
Sbjct: 3   RNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQV 62

Query: 301 DINDKETLTTIFEKEHFDCVIHFAGYKAVGESVDKPLEYYHNNFVGTVILLEVMRAHKCK 480
           D+ D+  L  IF +  FD VIHFAG KAVGESV+KPL YY+NN VGT+ LLEVM  H CK
Sbjct: 63  DLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCK 122

Query: 481 NMVFSSSCTVYGMPDEVPITESAPLKAISPYGRTKLFQEDMFRDLAVSDKDWRILLLRYF 660
           N+VFSSS TVYG P EVP TE  P+ A++PYGRTKLF E++ RD+  SD +W+I+LLRYF
Sbjct: 123 NLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYF 182

Query: 661 NPIGAHPSGELGEHPVGIPNNLMPYIQQVALGQREFLRVFGNDYPTPDGTAIRDYIHVMD 840
           NP+GAHPSG++GE P GIPNNLMP++QQVA+G+R  L VFGNDY T DGT +RDYIHV+D
Sbjct: 183 NPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHVID 242

Query: 841 LAEGHVSAVVKTLATPDLGCTPINLGTGKGTSVL 942
           LA+GH++A+ K L    +GC   NLGTG GTSVL
Sbjct: 243 LADGHIAALRK-LEDCKIGCEVYNLGTGNGTSVL 275

>sp|Q9SN58|GAE2_ARATH Probable UDP-glucose 4-epimerase At4g10960 (Galactowaldenase)
           (UDP-galactose 4-epimerase) gi|7437224|pir||T01881
           UDPglucose 4-epimerase (EC 5.1.3.2) F8M12.10 -
           Arabidopsis thaliana gi|3513739|gb|AAC33955.1| Similar
           to uridine diphosphate glucose epimerase; F8M12.10
           [Arabidopsis thaliana]
          Length = 350

 Score =  339 bits (870), Expect = 3e-92
 Identities = 163/274 (59%), Positives = 208/274 (75%)
 Frame = +1

Query: 121 KNIFVTGGLGFIGSHTVLVLLEHGATVHLIDNMANSFERVFEHMKKLAGDKADKMKFTKC 300
           +N+ V+GG G+IGSHTVL LL  G +V ++DN+ NS     + +KKLA +  +++ F + 
Sbjct: 3   RNVLVSGGAGYIGSHTVLQLLLGGYSVVVVDNLDNSSAVSLQRVKKLAAEHGERLSFHQV 62

Query: 301 DINDKETLTTIFEKEHFDCVIHFAGYKAVGESVDKPLEYYHNNFVGTVILLEVMRAHKCK 480
           D+ D+  L  IF +  FD VIHFAG KAVGESV+KPL YY+NN VGT+ LLEVM  H CK
Sbjct: 63  DLRDRSALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNLVGTITLLEVMAQHGCK 122

Query: 481 NMVFSSSCTVYGMPDEVPITESAPLKAISPYGRTKLFQEDMFRDLAVSDKDWRILLLRYF 660
           N+VFSSS TVYG P EVP TE  P+ A++PYGRTKLF E++ RD+  SD +W+I+LLRYF
Sbjct: 123 NLVFSSSATVYGSPKEVPCTEEFPISALNPYGRTKLFIEEICRDVYGSDPEWKIILLRYF 182

Query: 661 NPIGAHPSGELGEHPVGIPNNLMPYIQQVALGQREFLRVFGNDYPTPDGTAIRDYIHVMD 840
           NP+GAHPSG++GE P GIPNNLMP++QQVA+G+R  L VFGNDY T DGT +RDYIHV+D
Sbjct: 183 NPVGAHPSGDIGEDPRGIPNNLMPFVQQVAVGRRPHLTVFGNDYNTKDGTGVRDYIHVID 242

Query: 841 LAEGHVSAVVKTLATPDLGCTPINLGTGKGTSVL 942
           LA+GH++A+ K L    +GC   NLGTG GTSVL
Sbjct: 243 LADGHIAALRK-LEDCKIGCEVYNLGTGNGTSVL 275

>gb|AAM61178.1| UDPglucose 4-epimerase-like protein [Arabidopsis thaliana]
          Length = 350

 Score =  339 bits (869), Expect = 5e-92
 Identities = 163/274 (59%), Positives = 206/274 (74%)
 Frame = +1

Query: 121 KNIFVTGGLGFIGSHTVLVLLEHGATVHLIDNMANSFERVFEHMKKLAGDKADKMKFTKC 300
           K++ VTGG G+IGSHTVL LLE G +  ++DN  NS     + +KKLAG+  +++ F + 
Sbjct: 3   KSVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENRNRLSFHQV 62

Query: 301 DINDKETLTTIFEKEHFDCVIHFAGYKAVGESVDKPLEYYHNNFVGTVILLEVMRAHKCK 480
           D+ D+  L  IF +  FD VIHFAG KAVGESV+KPL YY+NN VGT+ LLEVM  + CK
Sbjct: 63  DLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTITLLEVMAQYGCK 122

Query: 481 NMVFSSSCTVYGMPDEVPITESAPLKAISPYGRTKLFQEDMFRDLAVSDKDWRILLLRYF 660
           N+VFSSS TVYG P EVP TE +P+ A +PYGRTKLF E++ RD+  SD +W+I+LLRYF
Sbjct: 123 NLVFSSSATVYGWPKEVPCTEESPISATNPYGRTKLFIEEICRDVHRSDSEWKIILLRYF 182

Query: 661 NPIGAHPSGELGEHPVGIPNNLMPYIQQVALGQREFLRVFGNDYPTPDGTAIRDYIHVMD 840
           NP+GAHPSG +GE P+G+PNNLMPY+QQVA+G+R  L VFG DY T DGT +RDYIHVMD
Sbjct: 183 NPVGAHPSGYIGEDPLGVPNNLMPYVQQVAVGRRPHLTVFGTDYKTKDGTGVRDYIHVMD 242

Query: 841 LAEGHVSAVVKTLATPDLGCTPINLGTGKGTSVL 942
           LA+GH++A+ K L    + C   NLGTG GTSVL
Sbjct: 243 LADGHIAALRK-LDDLKISCEVYNLGTGNGTSVL 275



EST assemble image


clone accession position
1 LC033f07_r AV621269 1 561
2 LC042d09_r AV621904 102 561
3 HC071h02_r AV637338 108 549
4 MX210e08_r BP089605 112 416
5 HC090g04_r AV638783 121 599
6 HC077f02_r AV637796 121 548
7 LC014h09_r AV619914 313 842
8 LC045b01_r AV622246 364 885
9 LC062e06_r AV623353 537 1047
10 CM075e11_r AV391662 539 1041




Chlamydomonas reinhardtii
Kazusa DNA Research Institute