Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001651A_C01 KCC001651A_c01
(635 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC07816.1| glucose-6-phosphate 1-dehydrogenase [Trypanosoma... 33 4.5
ref|NP_048668.1| a312aR [Paramecium bursaria Chlorella virus 1] ... 32 5.9
ref|XP_295965.1| hypothetical protein XP_295965 [Homo sapiens] 32 5.9
ref|XP_324472.1| hypothetical protein [Neurospora crassa] gi|288... 32 7.7
>emb|CAC07816.1| glucose-6-phosphate 1-dehydrogenase [Trypanosoma brucei]
Length = 521
Score = 32.7 bits (73), Expect = 4.5
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Frame = -3
Query: 582 QKNAMKTRAGPASALHCNSQKDTPGIHAHTH-TDRAVPS*HRTSVCVPQPYQ 430
Q+N + RA P+ A++ TPG+ + TH T+ + HR ++ +P Y+
Sbjct: 391 QRNELIIRAQPSEAMYLRLTAKTPGVLSDTHQTELDLSYEHRYNITLPDAYE 442
>ref|NP_048668.1| a312aR [Paramecium bursaria Chlorella virus 1]
gi|7461457|pir||T17811 hypothetical protein a312aR -
Chlorella virus PBCV-1 gi|2447210|gb|AAC97068.1| a312aR
[Paramecium bursaria Chlorella virus 1]
Length = 70
Score = 32.3 bits (72), Expect = 5.9
Identities = 15/26 (57%), Positives = 18/26 (68%), Gaps = 1/26 (3%)
Frame = +3
Query: 462 CVRRAQLCLYACARVCL-VYLFGCCS 536
C+RRA +CL+ C VCL V LF CS
Sbjct: 29 CLRRAFVCLFVCLFVCLFVCLFSSCS 54
>ref|XP_295965.1| hypothetical protein XP_295965 [Homo sapiens]
Length = 299
Score = 32.3 bits (72), Expect = 5.9
Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 3/143 (2%)
Frame = -1
Query: 530 TAKKIHQAYTRTRIQTELCPPDTGPLYVSPNRTNSKN*HPCKCRLSHLSQPFSVLLSLVA 351
T K IH A RT + P T P S T + H +HL+Q +++ +
Sbjct: 108 TCKNIHLACPRTCHHIQKHTPCTSPHASSHKHTPRTSSHASSHAKTHLAQTYTLHVLARV 167
Query: 350 FRCSATSAIVK-LSMQIE**LYVLYTASAKLLCHSLQRAPP--RHHKLTHE*YAETALGW 180
C T S E Y L+ + + C + A P RHH H +
Sbjct: 168 ITCKNTPRTSSHASSHTE--TYTLHILARVITCKNTHLACPRTRHHMQKHTPRMSSHASS 225
Query: 179 RQEIMRTGQRQSSTASSFPGSVL 111
+ T SS A ++ VL
Sbjct: 226 HKHTPCTSSHASSHAKTYTSHVL 248
>ref|XP_324472.1| hypothetical protein [Neurospora crassa]
gi|28881399|emb|CAD70440.1| related to tol protein
[Neurospora crassa] gi|28918186|gb|EAA27865.1|
hypothetical protein [Neurospora crassa]
Length = 847
Score = 32.0 bits (71), Expect = 7.7
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +3
Query: 99 TKRIEHRPGKRRRSGGLALSR-SHDFLSPPQCSFCILLMRQLVVPRGRPL 245
T + + PG R +G + L+ H F S +CSFC L++R ++ + R L
Sbjct: 48 TDKSDFHPGSRDSTGNIRLATIDHVFSSYHECSFCSLVLRLILRVKERHL 97
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 680,476,253
Number of Sequences: 1537769
Number of extensions: 15853234
Number of successful extensions: 44154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 41862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44130
length of database: 498,525,298
effective HSP length: 119
effective length of database: 315,530,787
effective search space used: 29028832404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
