KCC001648A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001648A_C01 KCC001648A_c01
ctgttATTCTTTGCGCAATGACACTCACCAGTTACCGAGTGAGGACAGTTTGTAAATCGT
AGAAATTAGCGCTCCGTCGCGATAGGACATGGAACGGAGCCCACAAATTCTGCTAGCAGC
AACAGGAAGCGTCGCTAGCATCAAGGTTGCGACGCTCTGCCGATTGCTACTGGAGATAGG
CGACGTAAAACTGATTGTCACCAGCTCAGCGAAGCATTTCATCAACGAGGACGAGCTGCC
GGATGCGGTGAAGCCGATTCTAGGGGACGAGACGGAGTGGCGGCAATGGCGCGCCGTGGG
CGACCCCGTGCTTCACATCGACCTGCGCCGCTGGGCCGACGTGCTGGTGGTTGCACCGCT
GTCCGCCAACAGCCTGGCCAAGCTGGCAAACGGTATGGCTGACAACCTGCTGACGTGTGT
GGTACGTGCCTGGGACTTCCGCAAGCCCCTGCTGGTTGCGCCCGCCATGAATACGGCCAT
GTGGGCGTCGCCGTTCACCGCTCGTCCACTAGACACGCTCACACAGCTGGGCGCCGGCGC
TGTCAGTAGCAGCAGCAGCGGCGGCGGTGGCAGGTACGCTGCAG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001648A_C01 KCC001648A_c01
         (584 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s gi|28948674|p...   182  4e-45
ref|NP_188430.1| HAL3A protein [Arabidopsis thaliana] gi|1312431...   182  4e-45
gb|AAF79709.1|AC020889_17 T1N15.24 [Arabidopsis thaliana]             180  1e-44
sp|P94063|HL3B_ARATH Halotolerance protein Hal3b gi|2047324|gb|A...   180  1e-44
ref|NP_068595.2| hypothetical protein MDS018 [Homo sapiens] gi|1...   157  1e-37

>pdb|1MVL|A Chain A, Ppc Decarboxylase Mutant C175s gi|28948674|pdb|1MVN|A
           Chain A, Ppc Decarboxylase Mutant C175s Complexed With
           Pantothenoylaminoethenethiol
          Length = 209

 Score =  182 bits (461), Expect = 4e-45
 Identities = 89/156 (57%), Positives = 113/156 (72%), Gaps = 5/156 (3%)
 Frame = +2

Query: 80  R*DME-----RSPQILLAATGSVASIKVATLCRLLLEIGDVKLIVTSSAKHFINEDELPD 244
           R DME     R P++LLAA+GSVA+IK   LC    E  +V+ +VT S+ HF+++  LP 
Sbjct: 8   RQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQ 67

Query: 245 AVKPILGDETEWRQWRAVGDPVLHIDLRRWADVLVVAPLSANSLAKLANGMADNLLTCVV 424
            V  +  DE EW  W  +GDPVLHI+LRRWADVLV+APLSAN+L K+A G+ DNLLTC++
Sbjct: 68  EVT-LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126

Query: 425 RAWDFRKPLLVAPAMNTAMWASPFTARPLDTLTQLG 532
           RAWD+ KPL VAPAMNT MW +PFT R L +L +LG
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELG 162

>ref|NP_188430.1| HAL3A protein [Arabidopsis thaliana]
           gi|13124313|sp|Q9SWE5|HL3A_ARATH Halotolerance protein
           Hal3a (AtHal3a) gi|10835869|pdb|1E20|A Chain A, The Fmn
           Binding Protein Athal3
           gi|5802225|gb|AAD51616.1|AF166262_1 HAL3A protein
           [Arabidopsis thaliana] gi|11994209|dbj|BAB01331.1| HAL3A
           protein [Arabidopsis thaliana]
          Length = 209

 Score =  182 bits (461), Expect = 4e-45
 Identities = 89/156 (57%), Positives = 113/156 (72%), Gaps = 5/156 (3%)
 Frame = +2

Query: 80  R*DME-----RSPQILLAATGSVASIKVATLCRLLLEIGDVKLIVTSSAKHFINEDELPD 244
           R DME     R P++LLAA+GSVA+IK   LC    E  +V+ +VT S+ HF+++  LP 
Sbjct: 8   RQDMEVNTTPRKPRVLLAASGSVAAIKFGNLCHCFTEWAEVRAVVTKSSLHFLDKLSLPQ 67

Query: 245 AVKPILGDETEWRQWRAVGDPVLHIDLRRWADVLVVAPLSANSLAKLANGMADNLLTCVV 424
            V  +  DE EW  W  +GDPVLHI+LRRWADVLV+APLSAN+L K+A G+ DNLLTC++
Sbjct: 68  EVT-LYTDEDEWSSWNKIGDPVLHIELRRWADVLVIAPLSANTLGKIAGGLCDNLLTCII 126

Query: 425 RAWDFRKPLLVAPAMNTAMWASPFTARPLDTLTQLG 532
           RAWD+ KPL VAPAMNT MW +PFT R L +L +LG
Sbjct: 127 RAWDYTKPLFVAPAMNTLMWNNPFTERHLLSLDELG 162

>gb|AAF79709.1|AC020889_17 T1N15.24 [Arabidopsis thaliana]
          Length = 464

 Score =  180 bits (456), Expect = 1e-44
 Identities = 85/146 (58%), Positives = 109/146 (74%)
 Frame = +2

Query: 95  RSPQILLAATGSVASIKVATLCRLLLEIGDVKLIVTSSAKHFINEDELPDAVKPILGDET 274
           R P+ILLAA+GSVASIK + LC    E  +VK + + S+ +F+++  LP  V  +  DE 
Sbjct: 273 RKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVT-LYTDED 331

Query: 275 EWRQWRAVGDPVLHIDLRRWADVLVVAPLSANSLAKLANGMADNLLTCVVRAWDFRKPLL 454
           EW  W  +GDPVLHI+LRRWADV+++APLSAN+LAK+A G+ DNLLTC+VRAWD+ KPL 
Sbjct: 332 EWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLF 391

Query: 455 VAPAMNTAMWASPFTARPLDTLTQLG 532
           VAPAMNT MW +PFT R L  L +LG
Sbjct: 392 VAPAMNTLMWNNPFTERHLVLLDELG 417

>sp|P94063|HL3B_ARATH Halotolerance protein Hal3b gi|2047324|gb|AAB53106.1| HAL3B protein
           [Arabidopsis thaliana]
          Length = 201

 Score =  180 bits (456), Expect = 1e-44
 Identities = 85/146 (58%), Positives = 109/146 (74%)
 Frame = +2

Query: 95  RSPQILLAATGSVASIKVATLCRLLLEIGDVKLIVTSSAKHFINEDELPDAVKPILGDET 274
           R P+ILLAA+GSVASIK + LC    E  +VK + + S+ +F+++  LP  V  +  DE 
Sbjct: 10  RKPRILLAASGSVASIKFSNLCHCFSEWAEVKAVASKSSLNFVDKPSLPQNVT-LYTDED 68

Query: 275 EWRQWRAVGDPVLHIDLRRWADVLVVAPLSANSLAKLANGMADNLLTCVVRAWDFRKPLL 454
           EW  W  +GDPVLHI+LRRWADV+++APLSAN+LAK+A G+ DNLLTC+VRAWD+ KPL 
Sbjct: 69  EWSSWNKIGDPVLHIELRRWADVMIIAPLSANTLAKIAGGLCDNLLTCIVRAWDYSKPLF 128

Query: 455 VAPAMNTAMWASPFTARPLDTLTQLG 532
           VAPAMNT MW +PFT R L  L +LG
Sbjct: 129 VAPAMNTLMWNNPFTERHLVLLDELG 154

>ref|NP_068595.2| hypothetical protein MDS018 [Homo sapiens]
           gi|14042206|dbj|BAB55151.1| unnamed protein product
           [Homo sapiens]
          Length = 204

 Score =  157 bits (397), Expect = 1e-37
 Identities = 78/150 (52%), Positives = 102/150 (68%), Gaps = 2/150 (1%)
 Frame = +2

Query: 89  MERSPQILLAATGSVASIKVATLCRLLLEIG--DVKLIVTSSAKHFINEDELPDAVKPIL 262
           MER   +L+  TGSVA++K+  L   LL+I   +V ++ T  AKHF +  ++P     + 
Sbjct: 14  MERKFHVLVGVTGSVAALKLPLLVSKLLDIPGLEVSVVTTERAKHFYSPQDIPVT---LY 70

Query: 263 GDETEWRQWRAVGDPVLHIDLRRWADVLVVAPLSANSLAKLANGMADNLLTCVVRAWDFR 442
            D  EW  W++  DPVLHIDLRRWAD+L+VAPL AN+L K+A+G+ DNLLTCV+RAWD  
Sbjct: 71  SDADEWEMWKSRSDPVLHIDLRRWADLLLVAPLDANTLGKVASGICDNLLTCVMRAWDRS 130

Query: 443 KPLLVAPAMNTAMWASPFTARPLDTLTQLG 532
           KPLL  PAMNTAMW  P TA+ +D L   G
Sbjct: 131 KPLLFCPAMNTAMWEHPITAQQVDQLKAFG 160



EST assemble image


clone accession position
1 CM074h04_r AV391535 1 584
2 MX204c06_r BP089276 6 426




Chlamydomonas reinhardtii
Kazusa DNA Research Institute