Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001647A_C01 KCC001647A_c01
(510 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S32437 pol polyprotein - Volvox carteri f. nagariensis retr... 163 1e-39
pir||T07965 reverse transcriptase homolog - Volvox carteri trans... 162 2e-39
ref|NP_198431.1| copia-related retrotransposable element [Arabid... 154 8e-37
pir||T10803 probable RNA-directed DNA polymerase (EC 2.7.7.49) -... 151 4e-36
gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi] 145 2e-34
>pir||S32437 pol polyprotein - Volvox carteri f. nagariensis retrotransposon Osser
gi|288597|emb|CAA49283.1| gag,protease,endonuclease,
reverse transcriptase,RNaseH [Volvox carteri]
Length = 1462
Score = 163 bits (413), Expect = 1e-39
Identities = 84/157 (53%), Positives = 107/157 (67%), Gaps = 2/157 (1%)
Frame = +2
Query: 2 MSAPTAAHWNLATGVLRYLVGTATQRLVYTRGQGD--VMGWCDSDYAGDLSKRRSTTGFV 175
MS PT HW A GV+RY+ GTA +V++ + + G+CDSDYA + RRSTTG+V
Sbjct: 1274 MSKPTVEHWQAAKGVVRYIAGTAGLGIVFSPKSSNPSLHGYCDSDYAACVDTRRSTTGYV 1333
Query: 176 FTYNGTAVSWASRLQATVAVSTVEAEYMAASFATKEALWLRKILSEMGVEVGTMCMQGDN 355
F G AVSW+SRLQ TVA ST EAEYMA+ ATKEALW R + ++ + V ++ + D+
Sbjct: 1334 FLNAGGAVSWSSRLQPTVATSTAEAEYMASGAATKEALWYRHLARDLQMRVSSVPILCDS 1393
Query: 356 QGAIACTENAISSIRTKHIDVQHHFVRQRVERGEVQF 466
Q AI N ISS R+KHIDV HHFVR+RV RGE+ F
Sbjct: 1394 QAAIKIINNPISSARSKHIDVLHHFVRERVARGEIVF 1430
>pir||T07965 reverse transcriptase homolog - Volvox carteri transposon Lusen
gi|2415368|gb|AAB70784.1| protease/reverse transcriptase
[Volvox carteri]
Length = 1053
Score = 162 bits (411), Expect = 2e-39
Identities = 82/154 (53%), Positives = 108/154 (69%)
Frame = +2
Query: 2 MSAPTAAHWNLATGVLRYLVGTATQRLVYTRGQGDVMGWCDSDYAGDLSKRRSTTGFVFT 181
MSAPT AH LA GVLRY+ GT L Y + G+ D+D+AGD + RRSTTG+ F
Sbjct: 867 MSAPTKAHMGLALGVLRYVSGTRALGLRYCGDASNFCGYSDADWAGDPATRRSTTGYAFL 926
Query: 182 YNGTAVSWASRLQATVAVSTVEAEYMAASFATKEALWLRKILSEMGVEVGTMCMQGDNQG 361
AVSW+S+LQ TVA S+VEAEY AA+ A +EALWLRK+ S++ + G + +Q D+QG
Sbjct: 927 LGSAAVSWSSQLQRTVAASSVEAEYQAAAAAVREALWLRKLASDLDLSPGAVNVQLDSQG 986
Query: 362 AIACTENAISSIRTKHIDVQHHFVRQRVERGEVQ 463
A++ N I+S+R+KHIDV HH V +RV RGEV+
Sbjct: 987 ALSLGNNPITSVRSKHIDVHHHIVCERVARGEVK 1020
>ref|NP_198431.1| copia-related retrotransposable element [Arabidopsis thaliana]
gi|10176701|dbj|BAB09923.1| copia-like retrotransposable
element [Arabidopsis thaliana]
Length = 1342
Score = 154 bits (388), Expect = 8e-37
Identities = 75/155 (48%), Positives = 104/155 (66%), Gaps = 1/155 (0%)
Frame = +2
Query: 2 MSAPTAAHWNLATGVLRYLVGTATQRLVYTRGQG-DVMGWCDSDYAGDLSKRRSTTGFVF 178
MS P+ HW V+RY+ GT L + + ++ G+CDSDYA DL +RRS TGFVF
Sbjct: 1153 MSKPSKEHWQAVKWVMRYMKGTQDTCLRFKKDDKFEIRGYCDSDYATDLDRRRSITGFVF 1212
Query: 179 TYNGTAVSWASRLQATVAVSTVEAEYMAASFATKEALWLRKILSEMGVEVGTMCMQGDNQ 358
T G +SW S LQ VA+ST EAEYMA + A KEA+WLR + +EMG E + + D+Q
Sbjct: 1213 TAGGNTISWKSGLQRVVALSTTEAEYMALAEAVKEAIWLRGLAAEMGFEQDAVEVMCDSQ 1272
Query: 359 GAIACTENAISSIRTKHIDVQHHFVRQRVERGEVQ 463
AIA ++N++ RTKHIDV++HF+R+++ GE+Q
Sbjct: 1273 SAIALSKNSVHHERTKHIDVRYHFIREKIADGEIQ 1307
>pir||T10803 probable RNA-directed DNA polymerase (EC 2.7.7.49) - Volvox carteri
f. nagariensis retrotransposon Lueckenbuesser
gi|1916937|gb|AAB51275.1| reverse transcriptase, gag,
polyprotein [Volvox carteri f. nagariensis]
Length = 1350
Score = 151 bits (382), Expect = 4e-36
Identities = 80/156 (51%), Positives = 106/156 (67%), Gaps = 1/156 (0%)
Frame = +2
Query: 2 MSAPTA-AHWNLATGVLRYLVGTATQRLVYTRGQGDVMGWCDSDYAGDLSKRRSTTGFVF 178
MS P +HW A VLRY+ T +V+ G ++G+ DSD+ D RRST G+VF
Sbjct: 1165 MSKPAVISHWEAAKSVLRYVKSTLAYGIVFC-GSQSLVGYADSDWPSDPDSRRST-GYVF 1222
Query: 179 TYNGTAVSWASRLQATVAVSTVEAEYMAASFATKEALWLRKILSEMGVEVGTMCMQGDNQ 358
NG A+SW SRLQ TVA S+VEAEYMAA+ AT+EA+WLRK++ ++G EV + ++ D+Q
Sbjct: 1223 ILNGGAISWKSRLQPTVAASSVEAEYMAAASATREAVWLRKLMRDLGYEVRAVEIKDDSQ 1282
Query: 359 GAIACTENAISSIRTKHIDVQHHFVRQRVERGEVQF 466
GAIA N I+S R+KHIDV HHFVR++ G V F
Sbjct: 1283 GAIALIRNPITSERSKHIDVIHHFVREKESSGSVSF 1318
>gb|AAK70406.1|AF369930_1 pol polyprotein [Citrus x paradisi]
Length = 297
Score = 145 bits (367), Expect = 2e-34
Identities = 73/154 (47%), Positives = 104/154 (67%), Gaps = 1/154 (0%)
Frame = +2
Query: 2 MSAPTAAHWNLATGVLRYLVGTATQRLVYTRGQGD-VMGWCDSDYAGDLSKRRSTTGFVF 178
M P + W +LRYL GT L++ + G +G+CDSD+AGDL K+RST+G+VF
Sbjct: 107 MHNPGKSQWLAVKWILRYLYGTVDVGLLFKKNCGQQCVGYCDSDFAGDLDKQRSTSGYVF 166
Query: 179 TYNGTAVSWASRLQATVAVSTVEAEYMAASFATKEALWLRKILSEMGVEVGTMCMQGDNQ 358
T G +VSW S LQ+T+A+ST EAEY+AA+ A KEA+WL+ +L ++GV + + DNQ
Sbjct: 167 TLGGGSVSWRSILQSTIALSTTEAEYIAATEAVKEAIWLKGLLGDLGVIQENIAVFCDNQ 226
Query: 359 GAIACTENAISSIRTKHIDVQHHFVRQRVERGEV 460
AI +N RTKHIDV++H+VR+ +E G+V
Sbjct: 227 SAIFLAKNQTYHARTKHIDVKYHYVREIIEGGDV 260
