KCC001645A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001645A_C01 KCC001645A_c01
gtggtgactcgcttcccgcccgagccgtcaggctacctgcacattgggcacgccaaggCG
GTGCTGCTGAACCAGTACTTTGCGGACATGTACAAGGGCAAGCTGCTGGTGCGCTTCGAC
GACACCAACCCCTCCAAGGAGAAGGATGAGTTCGTGGAGAACATCATGAAGGACATTGCG
GACCTGGGCCTGCGCTACGAGAAGCTGACGTACACGTCGGACTACTTCCCGCAGCTGCTG
GATCTGGGCGAGCGCATGATCCGCGCCGGCCTCATGTACGCCGACGACACGCCCGTGGAG
GCCATGCGCGAGCAGCGCGGCCGCGGCGAGGAGAGCGCCTGCCGCGGCCGCAGCGTGGAG
GAGAACCTGCGGCTGTGGGAGGAGATGAAGGCGGGCAGCGAGGTGGGGCTGGCCAACGCC
ATGCGCTTCAAGATCGACATGAAGTCGGTGAACGGCACCATGCGCGACCCGGTGGCCTTC
CGCTGCAACCTGACGCACCACTGGCGCACCGGCACCAAGTACAAGCTGTACCCCACCTAC
GACTGCGCCTGCCCCTTTGTGGACGCGGTGGAGGGCGTGACGCACGCGCTGCGCACCTCG
GAGTACCGCGACCGCGAGGAGCAGTACTACTGGATCCTGTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001645A_C01 KCC001645A_c01
         (642 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM08833.1|AC113335_13 Putative glutamyl-tRNA synthetase [Ory...   291  7e-78
dbj|BAA90375.1| unnamed protein product [Oryza sativa (japonica ...   288  6e-77
pir||T01200 probable glutamate-tRNA ligase (EC 6.1.1.17) F21E10....   288  6e-77
ref|NP_850874.1| glutamate-tRNA ligase (glutamyl-tRNA synthetase...   288  6e-77
ref|NP_011269.2| Protein required for cell viability; Ygl245wp [...   286  2e-76

>gb|AAM08833.1|AC113335_13 Putative glutamyl-tRNA synthetase [Oryza sativa (japonica
           cultivar-group)] gi|31431616|gb|AAP53367.1| putative
           glutamyl-tRNA synthetase [Oryza sativa (japonica
           cultivar-group)]
          Length = 713

 Score =  291 bits (744), Expect = 7e-78
 Identities = 135/213 (63%), Positives = 168/213 (78%)
 Frame = +1

Query: 1   VVTRFPPEPSGYLHIGHAKAVLLNQYFADMYKGKLLVRFDDTNPSKEKDEFVENIMKDIA 180
           V  RF PEPSGYLHIGHAKA LLN+YFA+ Y+G+L+VRFDDTNPSKE +EFVEN++KDI 
Sbjct: 206 VCVRFAPEPSGYLHIGHAKAALLNKYFAERYQGRLIVRFDDTNPSKESNEFVENLLKDIE 265

Query: 181 DLGLRYEKLTYTSDYFPQLLDLGERMIRAGLMYADDTPVEAMREQRGRGEESACRGRSVE 360
            LG++Y+ +TYTSDYFP+L+++ E++I+ G  Y DDTP E MR +R  G ES CR  +VE
Sbjct: 266 TLGIKYDAVTYTSDYFPKLMEMAEKLIKQGKAYVDDTPKEQMRSERMDGVESKCRNNTVE 325

Query: 361 ENLRLWEEMKAGSEVGLANAMRFKIDMKSVNGTMRDPVAFRCNLTHHWRTGTKYKLYPTY 540
           ENL LW+EM  GSE G+   +R K+DM+  N ++RDPV +RCN   H R G+KYK+YPTY
Sbjct: 326 ENLSLWKEMINGSERGMQCCVRGKLDMQDPNKSLRDPVYYRCNTDPHHRIGSKYKVYPTY 385

Query: 541 DCACPFVDAVEGVTHALRTSEYRDREEQYYWIL 639
           D ACPFVDA+EGVTHALR+SEY DR  QYY IL
Sbjct: 386 DFACPFVDALEGVTHALRSSEYHDRNAQYYRIL 418

>dbj|BAA90375.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
          Length = 715

 Score =  288 bits (736), Expect = 6e-77
 Identities = 133/213 (62%), Positives = 167/213 (77%)
 Frame = +1

Query: 1   VVTRFPPEPSGYLHIGHAKAVLLNQYFADMYKGKLLVRFDDTNPSKEKDEFVENIMKDIA 180
           V  RF PEPSGYLHIGHAKA LLN+YFA+ YKG+L+VRFDDTNPSKE +EFVEN++KD+ 
Sbjct: 208 VCVRFAPEPSGYLHIGHAKAGLLNKYFAERYKGRLIVRFDDTNPSKESNEFVENVLKDVE 267

Query: 181 DLGLRYEKLTYTSDYFPQLLDLGERMIRAGLMYADDTPVEAMREQRGRGEESACRGRSVE 360
            LG++Y+ +TYTSDYFPQL+++ E +I+ G  Y DDTP E MR +R  G ES CR  +V+
Sbjct: 268 TLGIKYDIVTYTSDYFPQLMEMAENLIKQGKAYVDDTPKEQMRSERMDGVESKCRNNTVQ 327

Query: 361 ENLRLWEEMKAGSEVGLANAMRFKIDMKSVNGTMRDPVAFRCNLTHHWRTGTKYKLYPTY 540
           +NL LW+EM  G+E G+   +R K+DM+  N ++RDPV +RCN   H R G+KYK+YPTY
Sbjct: 328 DNLSLWKEMINGTERGMQCCVRGKLDMQDPNKSLRDPVYYRCNTDPHHRIGSKYKVYPTY 387

Query: 541 DCACPFVDAVEGVTHALRTSEYRDREEQYYWIL 639
           D ACPFVDA+EGVTHALR+SEY DR  QYY IL
Sbjct: 388 DFACPFVDALEGVTHALRSSEYHDRNAQYYRIL 420

>pir||T01200 probable glutamate-tRNA ligase (EC 6.1.1.17) F21E10.12 -
           Arabidopsis thaliana gi|3047084|gb|AAC13597.1| similar
           to aminoacyl-tRNA synthetases [Arabidopsis thaliana]
          Length = 728

 Score =  288 bits (736), Expect = 6e-77
 Identities = 132/213 (61%), Positives = 169/213 (78%)
 Frame = +1

Query: 1   VVTRFPPEPSGYLHIGHAKAVLLNQYFADMYKGKLLVRFDDTNPSKEKDEFVENIMKDIA 180
           V  RF PEPSGYLHIGHAKA LLN+YFA+ Y+G+++VRFDDTNP+KE +EFV+N++KDI 
Sbjct: 223 VKLRFAPEPSGYLHIGHAKAALLNKYFAERYQGEVIVRFDDTNPAKESNEFVDNLVKDIG 282

Query: 181 DLGLRYEKLTYTSDYFPQLLDLGERMIRAGLMYADDTPVEAMREQRGRGEESACRGRSVE 360
            LG++YEK+TYTSDYFP+L+D+ E+++R G  Y DDTP E M+++R  G +S CR  SVE
Sbjct: 283 TLGIKYEKVTYTSDYFPELMDMAEKLMREGKAYVDDTPREQMQKERMDGIDSKCRNHSVE 342

Query: 361 ENLRLWEEMKAGSEVGLANAMRFKIDMKSVNGTMRDPVAFRCNLTHHWRTGTKYKLYPTY 540
           ENL+LW+EM AGSE GL   +R K +M+  N  MRDPV +RCN   H R G KYK+YPTY
Sbjct: 343 ENLKLWKEMIAGSERGLQCCVRGKFNMQDPNKAMRDPVYYRCNPMSHHRIGDKYKIYPTY 402

Query: 541 DCACPFVDAVEGVTHALRTSEYRDREEQYYWIL 639
           D ACPFVD++EG+THALR+SEY DR  QY+ +L
Sbjct: 403 DFACPFVDSLEGITHALRSSEYHDRNAQYFKVL 435

>ref|NP_850874.1| glutamate-tRNA ligase (glutamyl-tRNA synthetase) (GluRS), putative
           [Arabidopsis thaliana] gi|25293270|pir||T52043 probable
           glutamate-tRNA ligase (EC 6.1.1.17) [imported] -
           Arabidopsis thaliana gi|3435196|gb|AAC36469.1|
           glutamyl-tRNA synthetase [Arabidopsis thaliana]
           gi|20466252|gb|AAM20443.1| glutamyl-tRNA synthetase
           [Arabidopsis thaliana] gi|23198080|gb|AAN15567.1|
           glutamyl-tRNA synthetase [Arabidopsis thaliana]
          Length = 719

 Score =  288 bits (736), Expect = 6e-77
 Identities = 132/213 (61%), Positives = 169/213 (78%)
 Frame = +1

Query: 1   VVTRFPPEPSGYLHIGHAKAVLLNQYFADMYKGKLLVRFDDTNPSKEKDEFVENIMKDIA 180
           V  RF PEPSGYLHIGHAKA LLN+YFA+ Y+G+++VRFDDTNP+KE +EFV+N++KDI 
Sbjct: 214 VKLRFAPEPSGYLHIGHAKAALLNKYFAERYQGEVIVRFDDTNPAKESNEFVDNLVKDIG 273

Query: 181 DLGLRYEKLTYTSDYFPQLLDLGERMIRAGLMYADDTPVEAMREQRGRGEESACRGRSVE 360
            LG++YEK+TYTSDYFP+L+D+ E+++R G  Y DDTP E M+++R  G +S CR  SVE
Sbjct: 274 TLGIKYEKVTYTSDYFPELMDMAEKLMREGKAYVDDTPREQMQKERMDGIDSKCRNHSVE 333

Query: 361 ENLRLWEEMKAGSEVGLANAMRFKIDMKSVNGTMRDPVAFRCNLTHHWRTGTKYKLYPTY 540
           ENL+LW+EM AGSE GL   +R K +M+  N  MRDPV +RCN   H R G KYK+YPTY
Sbjct: 334 ENLKLWKEMIAGSERGLQCCVRGKFNMQDPNKAMRDPVYYRCNPMSHHRIGDKYKIYPTY 393

Query: 541 DCACPFVDAVEGVTHALRTSEYRDREEQYYWIL 639
           D ACPFVD++EG+THALR+SEY DR  QY+ +L
Sbjct: 394 DFACPFVDSLEGITHALRSSEYHDRNAQYFKVL 426

>ref|NP_011269.2| Protein required for cell viability; Ygl245wp [Saccharomyces
           cerevisiae]
          Length = 708

 Score =  286 bits (731), Expect = 2e-76
 Identities = 138/214 (64%), Positives = 170/214 (78%), Gaps = 1/214 (0%)
 Frame = +1

Query: 1   VVTRFPPEPSGYLHIGHAKAVLLNQYFADMYKGKLLVRFDDTNPSKEKDEFVENIMKDIA 180
           VVTRFPPEPSGYLHIGHAKA LLNQYFA  YKGKL++RFDDTNPSKEK+EF ++I++D+ 
Sbjct: 202 VVTRFPPEPSGYLHIGHAKAALLNQYFAQAYKGKLIIRFDDTNPSKEKEEFQDSILEDLD 261

Query: 181 DLGLRYEKLTYTSDYFPQLLDLGERMIRAGLMYADDTPVEAMREQRGRGEESACRGRSVE 360
            LG++ +++TY+SDYF ++ D   +MI+ G  Y DDTP E MRE+R  G  SA R RSVE
Sbjct: 262 LLGIKGDRITYSSDYFQEMYDYCVQMIKDGKAYCDDTPTEKMREERMDGVASARRDRSVE 321

Query: 361 ENLRLW-EEMKAGSEVGLANAMRFKIDMKSVNGTMRDPVAFRCNLTHHWRTGTKYKLYPT 537
           ENLR++ EEMK G+E GL N +R KID K++N T+RDPV +RCNLT H RTG+ +K+YPT
Sbjct: 322 ENLRIFTEEMKNGTEEGLKNCVRAKIDYKALNKTLRDPVIYRCNLTPHHRTGSTWKIYPT 381

Query: 538 YDCACPFVDAVEGVTHALRTSEYRDREEQYYWIL 639
           YD   P VDA+EGVTHALRT EYRDR  QY W+L
Sbjct: 382 YDFCVPIVDAIEGVTHALRTIEYRDRNAQYDWML 415



EST assemble image


clone accession position
1 HC037f03_r AV634765 1 174
2 CM074c01_r AV391516 59 660
3 LCL017a06_r AV626870 388 642




Chlamydomonas reinhardtii
Kazusa DNA Research Institute