KCC001639A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001639A_C01 KCC001639A_c01
CAAACCAGCCTGCATATATTTGTGCTGACCTAGCTCAAGACCAAACACAACCCTCAAGCA
GATCTTTCGCCTTTGCGCCAATTTCTGTCGCTTCACTTCCGTAGTCGTCCTTCCTAGCCA
GAAAGCAGCAGCAGGAGCCATGCTGCCACGGCCAACGAGTCACTCCAAGGCGCTAGGCCC
GGGCGTGGCCGGCCCGGAGCTCGCGGTGGCCACCTCCGCGGTGCTGGACCGGCCCCCGCA
GCCTGGCGCACACCTGCCGCTCAGCGGCGCCGCGCCCTGCGCCGTGGACCCCAGCTCGCT
GAACGACCCCCGCCAGCACACCAAGTACCCCTACGTGACGGGCACGTCCGTGCTTGCCGT
CAAGTACAAGGACGGCGTGCTGCTGGGCTGCGACACACTGGGCGCCTACGGCAGCACCAA
GCGCTACAAGAGCACGCAGCGCCTGTACCGCGTGAACGACAAGTGCGTGGTGGCGGCGGG
CGGCGAGATCAGCGAATTCCAGCACATCTCCAAACTGCTGGACGAGCTGACACCGACGAC
TACGCATGACAAGGGAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001639A_C01 KCC001639A_c01
         (557 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA96839.1| beta 7 subunit of 20S proteasome [Oryza sativa (...    92  4e-18
pir||T51986 C 3.4.25.1 proteasome endopeptidase complex () chain...    89  5e-17
ref|NP_176040.1| 20S proteasome beta subunit G1 (PBG1) [Arabidop...    88  7e-17
ref|NP_595308.1| 20s proteasome component (beta 7 ) [Schizosacch...    80  2e-14
ref|NP_116708.1| B-type subunit of proteasome, euk. & archae. mu...    79  4e-14

>dbj|BAA96839.1| beta 7 subunit of 20S proteasome [Oryza sativa (japonica
           cultivar-group)]
          Length = 256

 Score = 92.4 bits (228), Expect = 4e-18
 Identities = 47/99 (47%), Positives = 62/99 (62%)
 Frame = +2

Query: 236 PQPGAHLPLSGAAPCAVDPSSLNDPRQHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGS 415
           P  G+H   S AA    D        Q T+YPYVTG+S++A+KYKDGV++  DT  +YGS
Sbjct: 6   PMDGSHASGSKAAAAVADGPGT----QRTQYPYVTGSSIIALKYKDGVIMASDTGASYGS 61

Query: 416 TKRYKSTQRLYRVNDKCVVAAGGEISEFQHISKLLDELT 532
           T RYKS +R+  V    ++ A GE S+FQ I + LDELT
Sbjct: 62  TLRYKSVERIKAVGKHSLIGASGEFSDFQEILRYLDELT 100

>pir||T51986 C 3.4.25.1 proteasome endopeptidase complex () chain PBG1
           [imported] - Arabidopsis thaliana
           gi|3421123|gb|AAC32074.1| 20S proteasome beta subunit
           PBG1 [Arabidopsis thaliana]
          Length = 246

 Score = 88.6 bits (218), Expect = 5e-17
 Identities = 42/73 (57%), Positives = 54/73 (73%)
 Frame = +2

Query: 314 QHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVAAGGEIS 493
           Q T YPYVTGTSV+A+KYKDGVL+  D  G+YGST RYK+ +R+  +    ++ A GEIS
Sbjct: 22  QRTLYPYVTGTSVVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 494 EFQHISKLLDELT 532
           +FQ I + LDELT
Sbjct: 82  DFQEILRYLDELT 94

>ref|NP_176040.1| 20S proteasome beta subunit G1 (PBG1) [Arabidopsis thaliana]
           gi|25290070|pir||D96606 20S proteasome beta subunit
           (PBG1) [imported] - Arabidopsis thaliana
           gi|12323023|gb|AAG51500.1|AC058785_3 20S proteasome beta
           subunit (PBG1) [Arabidopsis thaliana]
           gi|14190405|gb|AAK55683.1|AF378880_1 At1g56450/F13N6_3
           [Arabidopsis thaliana] gi|15010590|gb|AAK73954.1|
           At1g56450/F13N6_3 [Arabidopsis thaliana]
           gi|15450551|gb|AAK96453.1| At1g56450/F13N6_3
           [Arabidopsis thaliana]
          Length = 246

 Score = 88.2 bits (217), Expect = 7e-17
 Identities = 41/73 (56%), Positives = 54/73 (73%)
 Frame = +2

Query: 314 QHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVAAGGEIS 493
           Q T YPYVTGTS++A+KYKDGVL+  D  G+YGST RYK+ +R+  +    ++ A GEIS
Sbjct: 22  QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81

Query: 494 EFQHISKLLDELT 532
           +FQ I + LDELT
Sbjct: 82  DFQEILRYLDELT 94

>ref|NP_595308.1| 20s proteasome component (beta 7 ) [Schizosaccharomyces pombe]
           gi|17380267|sp|Q9USQ9|PSB4_SCHPO Probable proteasome
           subunit beta type 4 gi|7493731|pir||T40554 yeast
           proteasome component PRE4 homolog - fission yeast
           (Schizosaccharomyces pombe) gi|5830510|emb|CAB54818.1|
           SPBC577.10 [Schizosaccharomyces pombe]
          Length = 262

 Score = 79.7 bits (195), Expect = 2e-14
 Identities = 37/78 (47%), Positives = 54/78 (68%)
 Frame = +2

Query: 296 SLNDPRQHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVA 475
           S + P Q T  P VTG+SVLA+K+ DGV++  D L +YGS  R+   +RL +V D  +V 
Sbjct: 28  STDAPIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVG 87

Query: 476 AGGEISEFQHISKLLDEL 529
           AGG+IS++Q I +LL++L
Sbjct: 88  AGGDISDYQQIQRLLEKL 105

>ref|NP_116708.1| B-type subunit of proteasome, euk. & archae. multicatalytic
           proteinase complex likelyinvolved in an
           ATP/ubiquitin-dependent nonlysosomal proteolytic
           pathway. eukary: the proteasome is composed of ~24
           subunits forming a ring-shaped structure; Pre4p
           [Saccharomyces cerevisiae]
           gi|266838|sp|P30657|PSB4_YEAST Proteasome component PRE4
           (Macropain subunit PRE4) (Proteinase YSCE subunit PRE4)
           (Multicatalytic endopeptidase complex subunit PRE4)
           gi|539340|pir||A46610 C 3.4.25.1 proteasome
           endopeptidase complex () chain PRE4 - yeast
           (Saccharomyces cerevisiae) gi|11514004|pdb|1G0U|M Chain
           M, A Gated Channel Into The Proteasome Core Particle
           gi|11514018|pdb|1G0U|1 Chain 1, A Gated Channel Into The
           Proteasome Core Particle gi|4223|emb|CAA48629.1|
           proteasome Pre4 subunit [Saccharomyces cerevisiae]
           gi|836805|dbj|BAA09289.1| proteosome component PRE4
           [Saccharomyces cerevisiae] gi|742353|prf||2009376D
           proteasome:SUBUNIT=Pre4
          Length = 266

 Score = 79.0 bits (193), Expect = 4e-14
 Identities = 36/81 (44%), Positives = 52/81 (63%)
 Frame = +2

Query: 308 PRQHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVAAGGE 487
           P  +T+ P VTGTSV+++KY +GV++  D LG+YGS  R+   +RL  V D  VV   G+
Sbjct: 30  PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89

Query: 488 ISEFQHISKLLDELTPTTTHD 550
           IS+ QHI +LL +L     +D
Sbjct: 90  ISDMQHIERLLKDLVTENAYD 110



EST assemble image


clone accession position
1 CM073h03_r AV391402 1 557
2 MX037e08_r BP087563 1 276
3 HC013b08_r AV632832 12 479




Chlamydomonas reinhardtii
Kazusa DNA Research Institute