Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001639A_C01 KCC001639A_c01
(557 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA96839.1| beta 7 subunit of 20S proteasome [Oryza sativa (... 92 4e-18
pir||T51986 C 3.4.25.1 proteasome endopeptidase complex () chain... 89 5e-17
ref|NP_176040.1| 20S proteasome beta subunit G1 (PBG1) [Arabidop... 88 7e-17
ref|NP_595308.1| 20s proteasome component (beta 7 ) [Schizosacch... 80 2e-14
ref|NP_116708.1| B-type subunit of proteasome, euk. & archae. mu... 79 4e-14
>dbj|BAA96839.1| beta 7 subunit of 20S proteasome [Oryza sativa (japonica
cultivar-group)]
Length = 256
Score = 92.4 bits (228), Expect = 4e-18
Identities = 47/99 (47%), Positives = 62/99 (62%)
Frame = +2
Query: 236 PQPGAHLPLSGAAPCAVDPSSLNDPRQHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGS 415
P G+H S AA D Q T+YPYVTG+S++A+KYKDGV++ DT +YGS
Sbjct: 6 PMDGSHASGSKAAAAVADGPGT----QRTQYPYVTGSSIIALKYKDGVIMASDTGASYGS 61
Query: 416 TKRYKSTQRLYRVNDKCVVAAGGEISEFQHISKLLDELT 532
T RYKS +R+ V ++ A GE S+FQ I + LDELT
Sbjct: 62 TLRYKSVERIKAVGKHSLIGASGEFSDFQEILRYLDELT 100
>pir||T51986 C 3.4.25.1 proteasome endopeptidase complex () chain PBG1
[imported] - Arabidopsis thaliana
gi|3421123|gb|AAC32074.1| 20S proteasome beta subunit
PBG1 [Arabidopsis thaliana]
Length = 246
Score = 88.6 bits (218), Expect = 5e-17
Identities = 42/73 (57%), Positives = 54/73 (73%)
Frame = +2
Query: 314 QHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVAAGGEIS 493
Q T YPYVTGTSV+A+KYKDGVL+ D G+YGST RYK+ +R+ + ++ A GEIS
Sbjct: 22 QRTLYPYVTGTSVVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81
Query: 494 EFQHISKLLDELT 532
+FQ I + LDELT
Sbjct: 82 DFQEILRYLDELT 94
>ref|NP_176040.1| 20S proteasome beta subunit G1 (PBG1) [Arabidopsis thaliana]
gi|25290070|pir||D96606 20S proteasome beta subunit
(PBG1) [imported] - Arabidopsis thaliana
gi|12323023|gb|AAG51500.1|AC058785_3 20S proteasome beta
subunit (PBG1) [Arabidopsis thaliana]
gi|14190405|gb|AAK55683.1|AF378880_1 At1g56450/F13N6_3
[Arabidopsis thaliana] gi|15010590|gb|AAK73954.1|
At1g56450/F13N6_3 [Arabidopsis thaliana]
gi|15450551|gb|AAK96453.1| At1g56450/F13N6_3
[Arabidopsis thaliana]
Length = 246
Score = 88.2 bits (217), Expect = 7e-17
Identities = 41/73 (56%), Positives = 54/73 (73%)
Frame = +2
Query: 314 QHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVAAGGEIS 493
Q T YPYVTGTS++A+KYKDGVL+ D G+YGST RYK+ +R+ + ++ A GEIS
Sbjct: 22 QRTLYPYVTGTSIVAIKYKDGVLMASDMGGSYGSTLRYKNIERVKAIGKHSLLGASGEIS 81
Query: 494 EFQHISKLLDELT 532
+FQ I + LDELT
Sbjct: 82 DFQEILRYLDELT 94
>ref|NP_595308.1| 20s proteasome component (beta 7 ) [Schizosaccharomyces pombe]
gi|17380267|sp|Q9USQ9|PSB4_SCHPO Probable proteasome
subunit beta type 4 gi|7493731|pir||T40554 yeast
proteasome component PRE4 homolog - fission yeast
(Schizosaccharomyces pombe) gi|5830510|emb|CAB54818.1|
SPBC577.10 [Schizosaccharomyces pombe]
Length = 262
Score = 79.7 bits (195), Expect = 2e-14
Identities = 37/78 (47%), Positives = 54/78 (68%)
Frame = +2
Query: 296 SLNDPRQHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVA 475
S + P Q T P VTG+SVLA+K+ DGV++ D L +YGS R+ +RL +V D +V
Sbjct: 28 STDAPIQRTVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVG 87
Query: 476 AGGEISEFQHISKLLDEL 529
AGG+IS++Q I +LL++L
Sbjct: 88 AGGDISDYQQIQRLLEKL 105
>ref|NP_116708.1| B-type subunit of proteasome, euk. & archae. multicatalytic
proteinase complex likelyinvolved in an
ATP/ubiquitin-dependent nonlysosomal proteolytic
pathway. eukary: the proteasome is composed of ~24
subunits forming a ring-shaped structure; Pre4p
[Saccharomyces cerevisiae]
gi|266838|sp|P30657|PSB4_YEAST Proteasome component PRE4
(Macropain subunit PRE4) (Proteinase YSCE subunit PRE4)
(Multicatalytic endopeptidase complex subunit PRE4)
gi|539340|pir||A46610 C 3.4.25.1 proteasome
endopeptidase complex () chain PRE4 - yeast
(Saccharomyces cerevisiae) gi|11514004|pdb|1G0U|M Chain
M, A Gated Channel Into The Proteasome Core Particle
gi|11514018|pdb|1G0U|1 Chain 1, A Gated Channel Into The
Proteasome Core Particle gi|4223|emb|CAA48629.1|
proteasome Pre4 subunit [Saccharomyces cerevisiae]
gi|836805|dbj|BAA09289.1| proteosome component PRE4
[Saccharomyces cerevisiae] gi|742353|prf||2009376D
proteasome:SUBUNIT=Pre4
Length = 266
Score = 79.0 bits (193), Expect = 4e-14
Identities = 36/81 (44%), Positives = 52/81 (63%)
Frame = +2
Query: 308 PRQHTKYPYVTGTSVLAVKYKDGVLLGCDTLGAYGSTKRYKSTQRLYRVNDKCVVAAGGE 487
P +T+ P VTGTSV+++KY +GV++ D LG+YGS R+ +RL V D VV G+
Sbjct: 30 PMVNTQQPIVTGTSVISMKYDNGVIIAADNLGSYGSLLRFNGVERLIPVGDNTVVGISGD 89
Query: 488 ISEFQHISKLLDELTPTTTHD 550
IS+ QHI +LL +L +D
Sbjct: 90 ISDMQHIERLLKDLVTENAYD 110