KCC001637A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001637A_C01 KCC001637A_c01
CAAAGCCTGATCATTTATCAAAACCGTTCTAGCTTCCTAAGTCGAAAACATGAGCTACAA
GGCAAAGACCGTCGTCTCCGCTCGTCGGGACCAGAAGAAGGGCCGCGTTGGCCTGACTGA
GGAGCAGAAGCAGGAGATCCGCGAGGCATTCGACCTCTTCGATACCGATGGCAGCGGCAC
CATCGACGCCAAGGAGCTGAAGGTGGCCATGCGTGCTCTGGCGCTTCGAGCCGAAGAAGG
AGGAGATCAAGAAGATGATCTCGGAGATTGACAAGGACGGCTCGGGCACCATCGACTTTG
AGGAGTTCCTGACCATGATGACCGCCAAGATGGGCGAGCGTGACTCTCGAGAGGAGATTC
TGAAGGCGTTCCGGCTCTTCGACGACGACAACTCGGGCACCATCACCATCAAGGACCTCC
GGCGTGTGGCCAAGGAGCTGGGCGAGAACCTGACTGAGGAGGAGCTCCAAGAGATGATTG
CGGAGGCGGACCGCAACGACGACAACGAGATCGACGAGGACGAGTTCATCCGGATCATGA
AGAAGACCTCGCTCTTCTAAACGACGCGGCTGGACT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001637A_C01 KCC001637A_c01
         (576 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P05434|CATR_CHLRE CALTRACTIN (CENTRIN) (20 KD CALCIUM-BINDING...   218  3e-83
sp|P54213|CATR_DUNSA CALTRACTIN (CENTRIN) gi|7441476|pir||T10724...   186  4e-70
sp|Q06827|CATR_SCHDU CALTRACTIN (CENTRIN) gi|631935|pir||S42551 ...   184  1e-64
gb|AAC04626.1| centrin [Marsilea vestita]                             181  1e-63
emb|CAA58718.1| centrin [Micromonas pusilla]                          187  3e-61

>sp|P05434|CATR_CHLRE CALTRACTIN (CENTRIN) (20 KD CALCIUM-BINDING PROTEIN)
           gi|71695|pir||BCKM caltractin - Chlamydomonas
           reinhardtii gi|18127|emb|CAA31163.1| unnamed protein
           product [Chlamydomonas reinhardtii]
           gi|18133|emb|CAA41039.1| caltractin [Chlamydomonas
           reinhardtii]
          Length = 169

 Score =  218 bits (556), Expect(2) = 3e-83
 Identities = 111/111 (100%), Positives = 111/111 (100%)
 Frame = +3

Query: 225 FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI 404
           FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI
Sbjct: 59  FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI 118

Query: 405 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 557
           TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF
Sbjct: 119 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 169

 Score =  112 bits (280), Expect(2) = 3e-83
 Identities = 57/63 (90%), Positives = 59/63 (93%)
 Frame = +2

Query: 50  MSYKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALALR 229
           MSYKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL   
Sbjct: 1   MSYKAKTVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFE 60

Query: 230 AEE 238
            ++
Sbjct: 61  PKK 63

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 27/66 (40%), Positives = 44/66 (65%)
 Frame = +3

Query: 342 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 521
           + ++EI +AF LFD D SGTI  K+L+   + LG    +EE+++MI+E D++    ID +
Sbjct: 25  EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFE 84

Query: 522 EFIRIM 539
           EF+ +M
Sbjct: 85  EFLTMM 90

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 18/44 (40%), Positives = 25/44 (55%)
 Frame = +2

Query: 122 EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALALRAEEGGDQE 253
           + ++EI +AF LFD D SGTI  K+L+   + L     E   QE
Sbjct: 98  DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQE 141

>sp|P54213|CATR_DUNSA CALTRACTIN (CENTRIN) gi|7441476|pir||T10724 probable caltractin -
           green alga (Dunaliella salina) gi|1293682|gb|AAB67855.1|
           caltractin-like protein [Dunaliella salina]
          Length = 169

 Score =  186 bits (473), Expect(2) = 4e-70
 Identities = 92/111 (82%), Positives = 103/111 (91%)
 Frame = +3

Query: 225 FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI 404
           FEPKKEEIKKMI++IDK GSGTIDFEEFL MMT+KMGERDSREEI+KAF+LFDDDN+G I
Sbjct: 59  FEPKKEEIKKMIADIDKAGSGTIDFEEFLQMMTSKMGERDSREEIIKAFKLFDDDNTGFI 118

Query: 405 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 557
           T+K+L+RVAKELGENLT+EELQEM  EADRN D +IDEDEF RIMKKTSLF
Sbjct: 119 TLKNLKRVAKELGENLTDEELQEMTDEADRNGDGQIDEDEFYRIMKKTSLF 169

 Score =  100 bits (249), Expect(2) = 4e-70
 Identities = 55/64 (85%), Positives = 58/64 (89%), Gaps = 1/64 (1%)
 Frame = +2

Query: 50  MSYKAKTVVSARRDQKKGRVG-LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALAL 226
           MSY+ KTVVSARRDQKKGRVG LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL  
Sbjct: 1   MSYR-KTVVSARRDQKKGRVGGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGF 59

Query: 227 RAEE 238
             ++
Sbjct: 60  EPKK 63

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 27/66 (40%), Positives = 44/66 (65%)
 Frame = +3

Query: 342 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 521
           + ++EI +AF LFD D SGTI  K+L+   + LG    +EE+++MIA+ D+     ID +
Sbjct: 25  EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKAGSGTIDFE 84

Query: 522 EFIRIM 539
           EF+++M
Sbjct: 85  EFLQMM 90

>sp|Q06827|CATR_SCHDU CALTRACTIN (CENTRIN) gi|631935|pir||S42551 caltractin - Scherffelia
           dubia gi|21209|emb|CAA49153.1| caltractin [Scherffelia
           dubia]
          Length = 168

 Score =  184 bits (468), Expect(2) = 1e-64
 Identities = 90/111 (81%), Positives = 103/111 (92%)
 Frame = +3

Query: 225 FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI 404
           FEPKKEEIKKMI++IDKDGSGTIDFEEFL MMTAKMGERDSREEI+KAFRLFDDD +G I
Sbjct: 58  FEPKKEEIKKMIADIDKDGSGTIDFEEFLQMMTAKMGERDSREEIMKAFRLFDDDETGKI 117

Query: 405 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 557
           + K+L+RVAKELGEN+T+EELQEMI EADR+ D E++E+EF RIMKKTSLF
Sbjct: 118 SFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTSLF 168

 Score = 84.3 bits (207), Expect(2) = 1e-64
 Identities = 47/64 (73%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
 Frame = +2

Query: 50  MSYKAKTVVSARRDQKKGR-VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALAL 226
           MSY+     SARRD+ K R  GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL  
Sbjct: 1   MSYRK--AASARRDKAKTRSAGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGF 58

Query: 227 RAEE 238
             ++
Sbjct: 59  EPKK 62

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 27/66 (40%), Positives = 45/66 (67%)
 Frame = +3

Query: 342 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 521
           + ++EI +AF LFD D SGTI  K+L+   + LG    +EE+++MIA+ D++    ID +
Sbjct: 24  EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFE 83

Query: 522 EFIRIM 539
           EF+++M
Sbjct: 84  EFLQMM 89

>gb|AAC04626.1| centrin [Marsilea vestita]
          Length = 170

 Score =  181 bits (458), Expect(2) = 1e-63
 Identities = 88/111 (79%), Positives = 102/111 (91%)
 Frame = +3

Query: 225 FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI 404
           FEPKKEEIKKMI++IDKDGSGTIDFE+FL MMT KMGERDS+EEI+KAFRLFDDD +G I
Sbjct: 60  FEPKKEEIKKMIADIDKDGSGTIDFEDFLQMMTTKMGERDSKEEIMKAFRLFDDDETGKI 119

Query: 405 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 557
           + K+L+RVAKELGEN+T+EELQEMI EADR+ D EI+E+EF RIMKKTSLF
Sbjct: 120 SFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEINEEEFYRIMKKTSLF 170

 Score = 84.7 bits (208), Expect(2) = 1e-63
 Identities = 46/64 (71%), Positives = 51/64 (78%), Gaps = 1/64 (1%)
 Frame = +2

Query: 50  MSYKAKTVVSARRDQKKGRV-GLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALAL 226
           MS   K V + RRD+ KGR  GL+EEQKQEIREAFDLFDTDGSGTIDAKELKVAMRAL  
Sbjct: 1   MSNFRKGVGTGRRDKNKGRAQGLSEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGF 60

Query: 227 RAEE 238
             ++
Sbjct: 61  EPKK 64

 Score = 56.6 bits (135), Expect = 2e-07
 Identities = 26/66 (39%), Positives = 45/66 (67%)
 Frame = +3

Query: 342 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 521
           + ++EI +AF LFD D SGTI  K+L+   + LG    +EE+++MIA+ D++    ID +
Sbjct: 26  EQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFE 85

Query: 522 EFIRIM 539
           +F+++M
Sbjct: 86  DFLQMM 91

>emb|CAA58718.1| centrin [Micromonas pusilla]
          Length = 148

 Score =  187 bits (474), Expect(2) = 3e-61
 Identities = 91/111 (81%), Positives = 104/111 (92%)
 Frame = +3

Query: 225 FEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTI 404
           FEPKKEEIKKMI++IDKDGSGTIDFEEFLTMMTAKMGERDSREEI+KAFRLFDDD +G I
Sbjct: 38  FEPKKEEIKKMIADIDKDGSGTIDFEEFLTMMTAKMGERDSREEIMKAFRLFDDDETGKI 97

Query: 405 TIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDEDEFIRIMKKTSLF 557
           + K+L+RVAKELGEN+T+EELQEMI EADR+ D E++E+EF RIMKKTSLF
Sbjct: 98  SFKNLKRVAKELGENMTDEELQEMIDEADRDGDGEVNEEEFFRIMKKTSLF 148

 Score = 70.5 bits (171), Expect(2) = 3e-61
 Identities = 35/42 (83%), Positives = 37/42 (87%)
 Frame = +2

Query: 113 LTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALALRAEE 238
           LTEEQKQEIR AFDLFDTDGSGTIDAKELKVAMRAL    ++
Sbjct: 1   LTEEQKQEIRXAFDLFDTDGSGTIDAKELKVAMRALGFEPKK 42

 Score = 56.2 bits (134), Expect = 3e-07
 Identities = 27/66 (40%), Positives = 43/66 (64%)
 Frame = +3

Query: 342 DSREEILKAFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDED 521
           + ++EI  AF LFD D SGTI  K+L+   + LG    +EE+++MIA+ D++    ID +
Sbjct: 4   EQKQEIRXAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMIADIDKDGSGTIDFE 63

Query: 522 EFIRIM 539
           EF+ +M
Sbjct: 64  EFLTMM 69



EST assemble image


clone accession position
1 HC080b09_r AV637977 1 539
2 MX226b11_r BP090595 3 368
3 LC009d04_r AV619515 96 561
4 LCL010d04_r AV626511 102 622
5 LC001d11_r AV618924 107 649
6 HC056e03_r AV636205 111 623
7 LC072f02_r AV624074 112 574
8 MX204e09_r BP089296 112 575
9 CM073d06_r AV391417 116 722
10 MX249f12_r BP092094 121 598
11 MX048g10_r BP087988 375 682




Chlamydomonas reinhardtii
Kazusa DNA Research Institute