KCC001635A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC001635A_C01 KCC001635A_c01
cgtgaacacatttgtgatgcgcgtgcgcgagtggtacagctggcacttcccggagctggt
gaagatcgtgaacgacaactACCAGTACGCGCGGCTGGCGCTCGTGGTCAAGGACAAGGG
CGGCCTCAGCGAGGAGCACCTGGCCGCCATGACGGAGATCACCGGGGACGAGGCCAAGTC
CAAGGAGATCCTGGACGCTGCCCGCTCCTCCATGGGCCAGGACATCTCGCCCATCGACCT
GCTGAACATCGAGGTGTTTGCGCAGCGCGTCATCAAGCTGGCCGAGTACCGCCAGAAGCT
GCACGCCTACCTGCTGGACAAGATGCACGCCGTGGCGCCCAACCTGTCGGCGCTCATTGG
CGAGACGGTGGGCGCGCGCCTGATCAGCCACGCCGGCTCGCTGACCAACCTGGCCAAGTA
CCCCGCCTCCACGGTGCAGATCCTGGGCGCGGAGAAGGCGCTGTTCAGGGCGCTGAAGAC
TCGCGGCAACACGCCTAAGTACGGCCTCATCTTCCACTCGTCCTTCATCGGCCGCGCCAA
GCAGCGCAACAAGGGCCGCATCTCGCGCTACCTGGCCAACAAGTGCTCCATCGCCTCGCG
CATCGACTGCTTCATGGACGGCAACACCAACGTGTTCGGCGAGAAGATGCGCGAGCAGGT
TGAGGAGCGGCTGCGGTTCTATGAGGAGGGCGTGGCGCCGCGCAAGAACGCCAGCGTGAT
GGGCGAGGCCATGGAGGCGGTCAAGGGGCAGCTCACCGCCGAGGAGGGCGAGGGCAAGAA
GCAGAAGGACAAGAAGGACAAGAAGGAGAAGCGGAAGCGCGATGACGATGACGACGATG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001635A_C01 KCC001635A_c01
(839 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02430.1| nucleolar protein [Arabidopsis thaliana] 387 e-107
ref|NP_176007.1| nucleolar protein Nop56, putative [Arabidopsis ... 387 e-106
ref|NP_187892.1| nucleolar protein Nop56, putative [Arabidopsis ... 380 e-104
emb|CAA10127.1| nucleolar protein [Cicer arietinum] 370 e-101
gb|AAH56732.1| Unknown (protein for IMAGE:6795155) [Danio rerio] 366 e-100
>dbj|BAB02430.1| nucleolar protein [Arabidopsis thaliana]
Length = 499
Score = 387 bits (995), Expect = e-107
Identities = 185/279 (66%), Positives = 235/279 (83%)
Frame = +2
Query: 2 VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
+N+F MRVREWYSWHFPELVKIVNDNY YA+++ ++ DK LSEEH+ +TE GDE K+
Sbjct: 185 INSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKIIVDKSKLSEEHIPMLTEALGDEDKA 244
Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
+E+++A ++SMGQD+SP+DL+N++ FAQRV+ LA+YR+KL+ YL+ KM +APNL+ALIG
Sbjct: 245 REVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIG 304
Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
E VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHSSFIGRA
Sbjct: 305 EMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAS 364
Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
+NKGRI+R+LANKCSIASRIDCF D +T FGEK+REQVEERL FY++GVAPRKN VM
Sbjct: 365 AKNKGRIARFLANKCSIASRIDCFSDNSTTAFGEKLREQVEERLDFYDKGVAPRKNVDVM 424
Query: 722 GEAMEAVKGQLTAEEGEGKKQKDKKDKKEKRKRDDDDDD 838
E +E ++ ++ EG+K D +KK+KRK ++ +++
Sbjct: 425 KEVLENLE-----KKDEGEKTVDASEKKKKRKTEEKEEE 458
>ref|NP_176007.1| nucleolar protein Nop56, putative [Arabidopsis thaliana]
gi|25330620|pir||D96602 nucleolar protein [imported] -
Arabidopsis thaliana gi|6056371|gb|AAF02835.1|AC009894_6
nucleolar protein [Arabidopsis thaliana]
gi|11878189|gb|AAG40838.1|AF302492_1 NOP56-like protein
[Arabidopsis thaliana] gi|14517412|gb|AAK62596.1|
At1g56110/T6H22_9 [Arabidopsis thaliana]
gi|20857405|gb|AAM26718.1| At1g56110/T6H22_9 [Arabidopsis
thaliana] gi|21592692|gb|AAM64641.1| SAR DNA binding
protein, putative [Arabidopsis thaliana]
Length = 522
Score = 387 bits (994), Expect = e-106
Identities = 188/281 (66%), Positives = 235/281 (82%), Gaps = 3/281 (1%)
Frame = +2
Query: 2 VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
+N+F MRVREWYSWHFPELVKIVNDNY YAR++ ++ DK L+E+H+ +TE+ GDE K+
Sbjct: 185 INSFAMRVREWYSWHFPELVKIVNDNYLYARVSKMIDDKSKLTEDHIPMLTEVLGDEDKA 244
Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
KE+++A ++SMG D+SP+DL+N++ FAQ+V+ LA+YR+KL+ YL+ KM +APNL+ALIG
Sbjct: 245 KEVIEAGKASMGSDLSPLDLINVQTFAQKVMDLADYRKKLYDYLVTKMSDIAPNLAALIG 304
Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
E VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHSSFIGRA
Sbjct: 305 EMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAS 364
Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
+NKGRI+RYLANKCSIASRIDCF DG T FGEK+REQVEERL FY++GVAPRKN VM
Sbjct: 365 AKNKGRIARYLANKCSIASRIDCFADGATTAFGEKLREQVEERLEFYDKGVAPRKNVDVM 424
Query: 722 GEAMEAVKGQLTAEEGEGKKQKD---KKDKKEKRKRDDDDD 835
E +E +K +E EGK+ D KK KK+K K +++++
Sbjct: 425 KEVIENLK-----QEEEGKEPVDASVKKSKKKKAKGEEEEE 460
>ref|NP_187892.1| nucleolar protein Nop56, putative [Arabidopsis thaliana]
Length = 477
Score = 380 bits (977), Expect = e-104
Identities = 186/293 (63%), Positives = 232/293 (78%), Gaps = 15/293 (5%)
Frame = +2
Query: 2 VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
+N+F MRVREWYSWHFPELVKIVNDNY YA+++ ++ DK LSEEH+ +TE GDE K+
Sbjct: 185 INSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKIIVDKSKLSEEHIPMLTEALGDEDKA 244
Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
+E+++A ++SMGQD+SP+DL+N++ FAQRV+ LA+YR+KL+ YL+ KM +APNL+ALIG
Sbjct: 245 REVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIG 304
Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
E VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHSSFIGRA
Sbjct: 305 EMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAS 364
Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
+NKGRI+R+LANKCSIASRIDCF D +T FGEK+REQVEERL FY++GVAPRKN VM
Sbjct: 365 AKNKGRIARFLANKCSIASRIDCFSDNSTTAFGEKLREQVEERLDFYDKGVAPRKNVDVM 424
Query: 722 GEAMEAVKGQLTAEEGEGKKQKDKK---------------DKKEKRKRDDDDD 835
E + + + EE + KK+K K KK+K+ + DD+
Sbjct: 425 KEKRKTEEKEEEKEEEKSKKKKKKSKAVEGEELTATDNGHSKKKKKTKSQDDE 477
>emb|CAA10127.1| nucleolar protein [Cicer arietinum]
Length = 454
Score = 370 bits (949), Expect = e-101
Identities = 181/278 (65%), Positives = 228/278 (81%)
Frame = +2
Query: 2 VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
+N+F MRVREWYSWHFPELVKIVNDNY Y ++A ++DK LSE+ L +T+ GDE K+
Sbjct: 114 INSFSMRVREWYSWHFPELVKIVNDNYLYCKVAKFIEDKSKLSEDKLEGLTDQVGDEDKA 173
Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
KEI++AA++SMGQD+SP+DL+N+ +FAQRV+ L++YR++L+ YL KM+ +APNL++LIG
Sbjct: 174 KEIIEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIG 233
Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
E VGARLISHAGSLTNLAK P+ST+QIL AEKALFRA KTR NTPKYGLIFHSSFIGRA
Sbjct: 234 EVVGARLISHAGSLTNLAKCPSSTLQILCAEKALFRAFKTRRNTPKYGLIFHSSFIGRAS 293
Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
+NKGR++RYLANKCSIASRIDCF + + +FGEK+REQVEERL FY++GVAPRKN VM
Sbjct: 294 AKNKGRMARYLANKCSIASRIDCFSENGSTIFGEKLREQVEERLDFYDKGVAPRKNIDVM 353
Query: 722 GEAMEAVKGQLTAEEGEGKKQKDKKDKKEKRKRDDDDD 835
A+E + T E E ++ KK KK+K+K D+DD
Sbjct: 354 KSAIEIADNKDT--EMETEEASAKKSKKKKQKATDEDD 389
>gb|AAH56732.1| Unknown (protein for IMAGE:6795155) [Danio rerio]
Length = 481
Score = 366 bits (940), Expect = e-100
Identities = 188/272 (69%), Positives = 222/272 (81%)
Frame = +2
Query: 2 VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
+NTF MRVREWY +HFPEL+KIV+DN Y +LA ++ ++ LSEE L AM EIT D AK+
Sbjct: 183 INTFSMRVREWYGYHFPELIKIVSDNSTYCKLAKLIGNRKELSEEMLEAMEEITMDSAKA 242
Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
+ ILDA+RSSMG DISPIDL+NIE F+ RV+ L +YRQ+L YL KM VAPNL+ALIG
Sbjct: 243 QAILDASRSSMGMDISPIDLINIECFSSRVVSLTDYRQELQEYLRSKMGQVAPNLAALIG 302
Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
E VGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA
Sbjct: 303 EVVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAA 362
Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
+NKGRISRYLANKC+IASRIDCF + T+VFG+K+R+QVEERL FYE G APRKN VM
Sbjct: 363 AKNKGRISRYLANKCTIASRIDCFSEVPTSVFGDKLRDQVEERLAFYETGEAPRKNLDVM 422
Query: 722 GEAMEAVKGQLTAEEGEGKKQKDKKDKKEKRK 817
EA+ A ++ AE ++K+KK KK ++K
Sbjct: 423 KEAV-AQASEVAAEIKRKLEKKEKKKKKRQKK 453
EST assemble image
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|
clone |
accession |
position |
1 |
CM072g08_r |
AV391506 |
1 |
596 |
2 |
CM089c08_r |
AV392274 |
144 |
704 |
3 |
LC064g11_r |
AV623507 |
375 |
839 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute