KCC001635A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001635A_C01 KCC001635A_c01
cgtgaacacatttgtgatgcgcgtgcgcgagtggtacagctggcacttcccggagctggt
gaagatcgtgaacgacaactACCAGTACGCGCGGCTGGCGCTCGTGGTCAAGGACAAGGG
CGGCCTCAGCGAGGAGCACCTGGCCGCCATGACGGAGATCACCGGGGACGAGGCCAAGTC
CAAGGAGATCCTGGACGCTGCCCGCTCCTCCATGGGCCAGGACATCTCGCCCATCGACCT
GCTGAACATCGAGGTGTTTGCGCAGCGCGTCATCAAGCTGGCCGAGTACCGCCAGAAGCT
GCACGCCTACCTGCTGGACAAGATGCACGCCGTGGCGCCCAACCTGTCGGCGCTCATTGG
CGAGACGGTGGGCGCGCGCCTGATCAGCCACGCCGGCTCGCTGACCAACCTGGCCAAGTA
CCCCGCCTCCACGGTGCAGATCCTGGGCGCGGAGAAGGCGCTGTTCAGGGCGCTGAAGAC
TCGCGGCAACACGCCTAAGTACGGCCTCATCTTCCACTCGTCCTTCATCGGCCGCGCCAA
GCAGCGCAACAAGGGCCGCATCTCGCGCTACCTGGCCAACAAGTGCTCCATCGCCTCGCG
CATCGACTGCTTCATGGACGGCAACACCAACGTGTTCGGCGAGAAGATGCGCGAGCAGGT
TGAGGAGCGGCTGCGGTTCTATGAGGAGGGCGTGGCGCCGCGCAAGAACGCCAGCGTGAT
GGGCGAGGCCATGGAGGCGGTCAAGGGGCAGCTCACCGCCGAGGAGGGCGAGGGCAAGAA
GCAGAAGGACAAGAAGGACAAGAAGGAGAAGCGGAAGCGCGATGACGATGACGACGATG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001635A_C01 KCC001635A_c01
         (839 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB02430.1| nucleolar protein [Arabidopsis thaliana]              387  e-107
ref|NP_176007.1| nucleolar protein Nop56, putative [Arabidopsis ...   387  e-106
ref|NP_187892.1| nucleolar protein Nop56, putative [Arabidopsis ...   380  e-104
emb|CAA10127.1| nucleolar protein [Cicer arietinum]                   370  e-101
gb|AAH56732.1| Unknown (protein for IMAGE:6795155) [Danio rerio]      366  e-100

>dbj|BAB02430.1| nucleolar protein [Arabidopsis thaliana]
          Length = 499

 Score =  387 bits (995), Expect = e-107
 Identities = 185/279 (66%), Positives = 235/279 (83%)
 Frame = +2

Query: 2    VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
            +N+F MRVREWYSWHFPELVKIVNDNY YA+++ ++ DK  LSEEH+  +TE  GDE K+
Sbjct: 185  INSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKIIVDKSKLSEEHIPMLTEALGDEDKA 244

Query: 182  KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
            +E+++A ++SMGQD+SP+DL+N++ FAQRV+ LA+YR+KL+ YL+ KM  +APNL+ALIG
Sbjct: 245  REVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIG 304

Query: 362  ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
            E VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHSSFIGRA 
Sbjct: 305  EMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAS 364

Query: 542  QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
             +NKGRI+R+LANKCSIASRIDCF D +T  FGEK+REQVEERL FY++GVAPRKN  VM
Sbjct: 365  AKNKGRIARFLANKCSIASRIDCFSDNSTTAFGEKLREQVEERLDFYDKGVAPRKNVDVM 424

Query: 722  GEAMEAVKGQLTAEEGEGKKQKDKKDKKEKRKRDDDDDD 838
             E +E ++     ++ EG+K  D  +KK+KRK ++ +++
Sbjct: 425  KEVLENLE-----KKDEGEKTVDASEKKKKRKTEEKEEE 458

>ref|NP_176007.1| nucleolar protein Nop56, putative [Arabidopsis thaliana]
            gi|25330620|pir||D96602 nucleolar protein [imported] -
            Arabidopsis thaliana gi|6056371|gb|AAF02835.1|AC009894_6
            nucleolar protein [Arabidopsis thaliana]
            gi|11878189|gb|AAG40838.1|AF302492_1 NOP56-like protein
            [Arabidopsis thaliana] gi|14517412|gb|AAK62596.1|
            At1g56110/T6H22_9 [Arabidopsis thaliana]
            gi|20857405|gb|AAM26718.1| At1g56110/T6H22_9 [Arabidopsis
            thaliana] gi|21592692|gb|AAM64641.1| SAR DNA binding
            protein, putative [Arabidopsis thaliana]
          Length = 522

 Score =  387 bits (994), Expect = e-106
 Identities = 188/281 (66%), Positives = 235/281 (82%), Gaps = 3/281 (1%)
 Frame = +2

Query: 2    VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
            +N+F MRVREWYSWHFPELVKIVNDNY YAR++ ++ DK  L+E+H+  +TE+ GDE K+
Sbjct: 185  INSFAMRVREWYSWHFPELVKIVNDNYLYARVSKMIDDKSKLTEDHIPMLTEVLGDEDKA 244

Query: 182  KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
            KE+++A ++SMG D+SP+DL+N++ FAQ+V+ LA+YR+KL+ YL+ KM  +APNL+ALIG
Sbjct: 245  KEVIEAGKASMGSDLSPLDLINVQTFAQKVMDLADYRKKLYDYLVTKMSDIAPNLAALIG 304

Query: 362  ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
            E VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHSSFIGRA 
Sbjct: 305  EMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAS 364

Query: 542  QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
             +NKGRI+RYLANKCSIASRIDCF DG T  FGEK+REQVEERL FY++GVAPRKN  VM
Sbjct: 365  AKNKGRIARYLANKCSIASRIDCFADGATTAFGEKLREQVEERLEFYDKGVAPRKNVDVM 424

Query: 722  GEAMEAVKGQLTAEEGEGKKQKD---KKDKKEKRKRDDDDD 835
             E +E +K     +E EGK+  D   KK KK+K K +++++
Sbjct: 425  KEVIENLK-----QEEEGKEPVDASVKKSKKKKAKGEEEEE 460

>ref|NP_187892.1| nucleolar protein Nop56, putative [Arabidopsis thaliana]
          Length = 477

 Score =  380 bits (977), Expect = e-104
 Identities = 186/293 (63%), Positives = 232/293 (78%), Gaps = 15/293 (5%)
 Frame = +2

Query: 2    VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
            +N+F MRVREWYSWHFPELVKIVNDNY YA+++ ++ DK  LSEEH+  +TE  GDE K+
Sbjct: 185  INSFAMRVREWYSWHFPELVKIVNDNYLYAKVSKIIVDKSKLSEEHIPMLTEALGDEDKA 244

Query: 182  KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
            +E+++A ++SMGQD+SP+DL+N++ FAQRV+ LA+YR+KL+ YL+ KM  +APNL+ALIG
Sbjct: 245  REVIEAGKASMGQDLSPVDLINVQTFAQRVMDLADYRKKLYDYLVTKMSDIAPNLAALIG 304

Query: 362  ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
            E VGARLISHAGSLTNLAK P+ST+QILGAEKALFRALKTRGNTPKYGLIFHSSFIGRA 
Sbjct: 305  EMVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAS 364

Query: 542  QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
             +NKGRI+R+LANKCSIASRIDCF D +T  FGEK+REQVEERL FY++GVAPRKN  VM
Sbjct: 365  AKNKGRIARFLANKCSIASRIDCFSDNSTTAFGEKLREQVEERLDFYDKGVAPRKNVDVM 424

Query: 722  GEAMEAVKGQLTAEEGEGKKQKDKK---------------DKKEKRKRDDDDD 835
             E  +  + +   EE + KK+K K                 KK+K+ +  DD+
Sbjct: 425  KEKRKTEEKEEEKEEEKSKKKKKKSKAVEGEELTATDNGHSKKKKKTKSQDDE 477

>emb|CAA10127.1| nucleolar protein [Cicer arietinum]
          Length = 454

 Score =  370 bits (949), Expect = e-101
 Identities = 181/278 (65%), Positives = 228/278 (81%)
 Frame = +2

Query: 2   VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
           +N+F MRVREWYSWHFPELVKIVNDNY Y ++A  ++DK  LSE+ L  +T+  GDE K+
Sbjct: 114 INSFSMRVREWYSWHFPELVKIVNDNYLYCKVAKFIEDKSKLSEDKLEGLTDQVGDEDKA 173

Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
           KEI++AA++SMGQD+SP+DL+N+ +FAQRV+ L++YR++L+ YL  KM+ +APNL++LIG
Sbjct: 174 KEIIEAAKASMGQDLSPVDLINVHMFAQRVMDLSDYRRRLYDYLTTKMNDIAPNLASLIG 233

Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
           E VGARLISHAGSLTNLAK P+ST+QIL AEKALFRA KTR NTPKYGLIFHSSFIGRA 
Sbjct: 234 EVVGARLISHAGSLTNLAKCPSSTLQILCAEKALFRAFKTRRNTPKYGLIFHSSFIGRAS 293

Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
            +NKGR++RYLANKCSIASRIDCF +  + +FGEK+REQVEERL FY++GVAPRKN  VM
Sbjct: 294 AKNKGRMARYLANKCSIASRIDCFSENGSTIFGEKLREQVEERLDFYDKGVAPRKNIDVM 353

Query: 722 GEAMEAVKGQLTAEEGEGKKQKDKKDKKEKRKRDDDDD 835
             A+E    + T  E E ++   KK KK+K+K  D+DD
Sbjct: 354 KSAIEIADNKDT--EMETEEASAKKSKKKKQKATDEDD 389

>gb|AAH56732.1| Unknown (protein for IMAGE:6795155) [Danio rerio]
          Length = 481

 Score =  366 bits (940), Expect = e-100
 Identities = 188/272 (69%), Positives = 222/272 (81%)
 Frame = +2

Query: 2   VNTFVMRVREWYSWHFPELVKIVNDNYQYARLALVVKDKGGLSEEHLAAMTEITGDEAKS 181
           +NTF MRVREWY +HFPEL+KIV+DN  Y +LA ++ ++  LSEE L AM EIT D AK+
Sbjct: 183 INTFSMRVREWYGYHFPELIKIVSDNSTYCKLAKLIGNRKELSEEMLEAMEEITMDSAKA 242

Query: 182 KEILDAARSSMGQDISPIDLLNIEVFAQRVIKLAEYRQKLHAYLLDKMHAVAPNLSALIG 361
           + ILDA+RSSMG DISPIDL+NIE F+ RV+ L +YRQ+L  YL  KM  VAPNL+ALIG
Sbjct: 243 QAILDASRSSMGMDISPIDLINIECFSSRVVSLTDYRQELQEYLRSKMGQVAPNLAALIG 302

Query: 362 ETVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRAK 541
           E VGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHS+FIGRA 
Sbjct: 303 EVVGARLISHAGSLTNLAKYPASTVQILGAEKALFRALKTRGNTPKYGLIFHSTFIGRAA 362

Query: 542 QRNKGRISRYLANKCSIASRIDCFMDGNTNVFGEKMREQVEERLRFYEEGVAPRKNASVM 721
            +NKGRISRYLANKC+IASRIDCF +  T+VFG+K+R+QVEERL FYE G APRKN  VM
Sbjct: 363 AKNKGRISRYLANKCTIASRIDCFSEVPTSVFGDKLRDQVEERLAFYETGEAPRKNLDVM 422

Query: 722 GEAMEAVKGQLTAEEGEGKKQKDKKDKKEKRK 817
            EA+ A   ++ AE     ++K+KK KK ++K
Sbjct: 423 KEAV-AQASEVAAEIKRKLEKKEKKKKKRQKK 453



EST assemble image


clone accession position
1 CM072g08_r AV391506 1 596
2 CM089c08_r AV392274 144 704
3 LC064g11_r AV623507 375 839




Chlamydomonas reinhardtii
Kazusa DNA Research Institute