>KCC001631A_C01 KCC001631A_c01
gcacgagggcgctgcgagtggcgtgcttcaagagtgggtgtgggcgccgcatgtttgttc
ggcacgtggaggttgccaccGGCACGGCCTGGCCCGCACGGTGGTTTGCTGCTATGATGG
CGCTCCACCGGGGTCGAATCTGCATGACCGGAGATACGTCTTCGTGATCAAGTTTTGCAG
AGCTGGCCATGGCGCATCCTAGAACATGCGTGAGTGTGCGGGACAAGCGGGAACGTTACA
GGTGGCGTCATACGGGGGTGGCTGTCTGCAACGGCGTGGCAGGCTGCATCTTTCAATGGC
AACGACACGCGCCCTTGTGCGGCAGCCACTGCAAGGAGGGAGGGCGAGCTACGTCGCAGG
GCTTGAGGAGATGTTTGACGGAGTCGTTCATGTTGCGGAGCCGGCCTCGGTGTCATTGAT
TCGTGGTGCTCAAGGCCGGTCACAGGGCGCATGAATGGGTGGGCATGAGTGTGCGTGGTT
GTCACGAGCGTGTTCTGTGTGCATATGGCACCTGCTGGTGTGGTTGGCGTCTAGTCTGCA
GCTGGTCTGAATCGAGAATCATTCTACTACTTCGGGCACGCAGGCGGCAG

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001631A_C01 KCC001631A_c01
         (590 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) ...    39  0.054
ref|XP_222019.2| similar to RIKEN cDNA 9430031J16 [Rattus norveg...    37  0.16
ref|NP_780730.2| RIKEN cDNA 6430598A04 gene [Mus musculus] gi|34...    37  0.20
dbj|BAC38036.1| unnamed protein product [Mus musculus]                 37  0.20
ref|XP_144597.2| RIKEN cDNA 6430598A04 gene [Mus musculus]             37  0.20

>ref|NP_492875.2| pre-mRNA splicing SR protein related (68.2 kD) (rsr-1)
           [Caenorhabditis elegans] gi|19571645|emb|CAB04214.3| C.
           elegans RSR-1 protein (corresponding sequence F28D9.1)
           [Caenorhabditis elegans]
          Length = 601

 Score = 38.9 bits (89), Expect = 0.054
 Identities = 40/146 (27%), Positives = 53/146 (35%), Gaps = 7/146 (4%)
 Frame = -1

Query: 419 SMTPRPAPQHERLRQTSPQALRRSSPSLLAVAAAQGRVSLPLKD---AACHAVADSHPRM 249
           S +P PAP+  + R  SP A RR SPS      A  R   P K    A    +  +  R 
Sbjct: 354 SKSPPPAPKRAKSRSKSPPARRRRSPSASKSPPAPRRRRSPSKSRSPAPKREIPPARRRR 413

Query: 248 TPPVTFPLVPHTHACSRMRHGQLCKT*SRRRISGHADSTPVERHHSSKPPCGPGR----A 81
           +P  +        A SR +     +   RR  S      P  R   SK P  P R    +
Sbjct: 414 SPSASKSPPAPKRAKSRSKSPPAPR--RRRSPSQSKSPAPRRRRSPSKSPQAPRRRRSPS 471

Query: 80  GGNLHVPNKHAAPTPTLEARHSQRPR 3
           G     P +  +P      R S + R
Sbjct: 472 GSKSRSPRRRRSPAAAPRRRQSPQRR 497

>ref|XP_222019.2| similar to RIKEN cDNA 9430031J16 [Rattus norvegicus]
          Length = 747

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 41/156 (26%), Positives = 52/156 (33%), Gaps = 12/156 (7%)
 Frame = -1

Query: 467 HAHPFMRPVTGLEHHESMTPRPA------PQHERLRQTSPQALRRSSPSLLAVAAAQGRV 306
           H HP  RP + L      TP         P    L Q  P  L        + A   G  
Sbjct: 220 HPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGDGVS 279

Query: 305 SLPLKDAACHAVADSHPRMTPPV------TFPLVPHTHACSRMRHGQLCKT*SRRRISGH 144
            LP+    CH+   +     P V      T PL P   A + +  G           SG 
Sbjct: 280 RLPV---LCHSKESAGSTPAPQVPARERETPPLPPPPPAANLLLLGP----------SGR 326

Query: 143 ADSTPVERHHSSKPPCGPGRAGGNLHVPNKHAAPTP 36
           A S     H +  PP G G+  G   +PN H+   P
Sbjct: 327 ARS-----HSTPLPPQGSGQTRGERELPNSHSMICP 357

>ref|NP_780730.2| RIKEN cDNA 6430598A04 gene [Mus musculus]
           gi|34980939|gb|AAH57372.1| Unknown (protein for
           MGC:67304) [Mus musculus]
          Length = 833

 Score = 37.0 bits (84), Expect = 0.20
 Identities = 41/156 (26%), Positives = 52/156 (33%), Gaps = 12/156 (7%)
 Frame = -1

Query: 467 HAHPFMRPVTGLEHHESMTPRPA------PQHERLRQTSPQALRRSSPSLLAVAAAQGRV 306
           H HP  RP + L      TP         P    L Q  P  L        + A   G  
Sbjct: 294 HPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGDGVS 353

Query: 305 SLPLKDAACHAVADSHPRMTPPV------TFPLVPHTHACSRMRHGQLCKT*SRRRISGH 144
            LP+    CH+   +     P V      T PL P   A + +  G           SG 
Sbjct: 354 RLPV---LCHSKEPAGSTPAPQVPARERETPPLPPPPPAANLLLLGP----------SGR 400

Query: 143 ADSTPVERHHSSKPPCGPGRAGGNLHVPNKHAAPTP 36
           A S     H +  PP G G+  G   +PN H+   P
Sbjct: 401 ARS-----HSTPLPPQGSGQTRGERELPNSHSMICP 431

>dbj|BAC38036.1| unnamed protein product [Mus musculus]
          Length = 563

 Score = 37.0 bits (84), Expect = 0.20
 Identities = 41/156 (26%), Positives = 52/156 (33%), Gaps = 12/156 (7%)
 Frame = -1

Query: 467 HAHPFMRPVTGLEHHESMTPRPA------PQHERLRQTSPQALRRSSPSLLAVAAAQGRV 306
           H HP  RP + L      TP         P    L Q  P  L        + A   G  
Sbjct: 25  HPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGDGVS 84

Query: 305 SLPLKDAACHAVADSHPRMTPPV------TFPLVPHTHACSRMRHGQLCKT*SRRRISGH 144
            LP+    CH+   +     P V      T PL P   A + +  G           SG 
Sbjct: 85  RLPV---LCHSKEPAGSTPAPQVPARERETPPLPPPPPAANLLLLGP----------SGR 131

Query: 143 ADSTPVERHHSSKPPCGPGRAGGNLHVPNKHAAPTP 36
           A S     H +  PP G G+  G   +PN H+   P
Sbjct: 132 ARS-----HSTPLPPQGSGQTRGERELPNSHSMICP 162

>ref|XP_144597.2| RIKEN cDNA 6430598A04 gene [Mus musculus]
          Length = 618

 Score = 37.0 bits (84), Expect = 0.20
 Identities = 41/156 (26%), Positives = 52/156 (33%), Gaps = 12/156 (7%)
 Frame = -1

Query: 467 HAHPFMRPVTGLEHHESMTPRPA------PQHERLRQTSPQALRRSSPSLLAVAAAQGRV 306
           H HP  RP + L      TP         P    L Q  P  L        + A   G  
Sbjct: 80  HPHPHRRPASALPSRRDGTPTKTTPCEIPPPFPNLLQHRPPLLAFPQAKSASRAPGDGVS 139

Query: 305 SLPLKDAACHAVADSHPRMTPPV------TFPLVPHTHACSRMRHGQLCKT*SRRRISGH 144
            LP+    CH+   +     P V      T PL P   A + +  G           SG 
Sbjct: 140 RLPV---LCHSKEPAGSTPAPQVPARERETPPLPPPPPAANLLLLGP----------SGR 186

Query: 143 ADSTPVERHHSSKPPCGPGRAGGNLHVPNKHAAPTP 36
           A S     H +  PP G G+  G   +PN H+   P
Sbjct: 187 ARS-----HSTPLPPQGSGQTRGERELPNSHSMICP 217

EST assemble image

clone accession position 1 CM072a12_r AV391452 1 594 2 HC061d04_r AV636578 129 496 3 LC039d03_r AV621667 148 590

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