KCC001629A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001629A_C01 KCC001629A_c01
CATCAAAAGCACAAGACAATTTATGATGTTCCAAATGACAATATTTCAGCTCATAACTTA
GCTGGATTGATGTACCCACGCGTTTATGGTTTAGACGTGTTTGGCCATCTTCCCGAGGCT
GTCACGGCCGCTGCGCGCGCTCTTCCTTTTCTGTAGTTGACCATGGATCTGAATGCTGGC
ACGCTACTGGGCAAGTCCGGCGTGGAGCCAGCCCTGGAGGCCTGGTGCTTCCTGGCGACG
TGGGCGATGATAGGCACGGCGGTGCCTGTCTTCCTAGCCCTCATCGCCGGCATCACTGCG
CCGTATGGGCGATACGTCAGGTCGGGCTGGGGCATCTTCTTGAACGCCCGCGTCGCGTGG
CTGACACAAGAGATACCCTCCCTCATAGTCTTCGTCGTCATGCTGTTGTTGTTTTCGACT
CCTGACAGCTTCCTGCAGCACCCGCTCAGCGCTCGCACGGTCCTATCTGGCGCGTTCTGC
GCCCACTACGTCTACCGCTCAATTGTGTTCCCCTTCATCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001629A_C01 KCC001629A_c01
         (521 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_510071.1| steroid 5 alpha-reductase (XM969) [Caenorhabdit...    67  1e-10
ref|NP_510077.1| steroid 5 alpha-reductase family member (XM985)...    64  9e-10
dbj|BAC87862.1| steroid 5alpha-reductase [Ipomoea nil]                 54  2e-06
ref|NP_181340.1| 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid ...    50  1e-05
gb|AAC49264.1| steroid reductase DET2 [Arabidopsis thaliana]           50  1e-05

>ref|NP_510071.1| steroid 5 alpha-reductase (XM969) [Caenorhabditis elegans]
           gi|7503255|pir||T22101 hypothetical protein F42F12.3 -
           Caenorhabditis elegans gi|3877047|emb|CAA92173.1|
           Hypothetical protein F42F12.3 [Caenorhabditis elegans]
          Length = 243

 Score = 67.0 bits (162), Expect = 1e-10
 Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 2/97 (2%)
 Frame = +1

Query: 232 LATWAMIGTAVPVFLALIAGITAPYGRYV-RSGWGIFLNARVAWLTQEIPSLIVFVVMLL 408
           +  WAMIGTA  VF AL  G+TA YGRY  ++ WGI  N ++AW  QE P+         
Sbjct: 7   MMAWAMIGTAFFVFFALKMGLTAGYGRYTNQAQWGI--NPKLAWFIQESPA--------- 55

Query: 409 LFSTPDSFLQHPLSAR-TVLSGAFCAHYVYRSIVFPF 516
            F  P  FL   LS+   +L+  F  HY YR++++PF
Sbjct: 56  -FFIPFYFLFGGLSSTGRILNCIFLVHYFYRALIYPF 91

>ref|NP_510077.1| steroid 5 alpha-reductase family member (XM985) [Caenorhabditis
           elegans] gi|7499445|pir||T21123 hypothetical protein
           F19H6.4 - Caenorhabditis elegans
           gi|3876116|emb|CAA92168.1| Hypothetical protein F19H6.4
           [Caenorhabditis elegans]
          Length = 243

 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 38/92 (41%), Positives = 53/92 (57%), Gaps = 1/92 (1%)
 Frame = +1

Query: 241 WAMIGTAVPVFLALIAGITAPYGRYV-RSGWGIFLNARVAWLTQEIPSLIVFVVMLLLFS 417
           WAMIG AV VFLAL  G TA YGRY  RS +GI  N ++AW  QE P+  + +  L    
Sbjct: 10  WAMIGMAVIVFLALTRGFTAGYGRYADRSKYGI--NPKLAWFIQEAPAFFIPLYYL---- 63

Query: 418 TPDSFLQHPLSARTVLSGAFCAHYVYRSIVFP 513
                 + P ++   L+ AF  HY +R++++P
Sbjct: 64  -----RRGPSNSGYELNAAFLFHYFFRALIYP 90

>dbj|BAC87862.1| steroid 5alpha-reductase [Ipomoea nil]
          Length = 266

 Score = 53.5 bits (127), Expect = 2e-06
 Identities = 33/100 (33%), Positives = 56/100 (56%), Gaps = 1/100 (1%)
 Frame = +1

Query: 217 EAWCFL-ATWAMIGTAVPVFLALIAGITAPYGRYVRSGWGIFLNARVAWLTQEIPSLIVF 393
           + W F  + + ++  A PV++A    ITAP+G++VR GWG  ++  +AW   E P+ I  
Sbjct: 11  DQWLFRHSVFVLLLIAPPVYIAC-RFITAPFGKHVRPGWGPTISPPLAWFLMESPA-IWL 68

Query: 394 VVMLLLFSTPDSFLQHPLSARTVLSGAFCAHYVYRSIVFP 513
            ++L  F    S   +PL+   +L   +  HY +R+IV+P
Sbjct: 69  TLLLFPFGRSSS---NPLA--QILMAPYLLHYAHRTIVYP 103

>ref|NP_181340.1| 3-oxo-5-alpha-steroid 4-dehydrogenase (steroid 5-alpha-reductase),
           putative [Arabidopsis thaliana]
           gi|20177876|sp|Q38944|DET2_ARATH Probable steroid
           reductase DET2 gi|25345320|pir||C84800
           3-oxo-5-alpha-steroid 4-dehydrogenase [imported] -
           Arabidopsis thaliana gi|4895180|gb|AAD32767.1|AC007661_4
           3-oxo-5-alpha-steroid 4-dehydrogenase [Arabidopsis
           thaliana] gi|15028207|gb|AAK76600.1| putative
           3-oxo-5-alpha-steroid 4-dehydrogenase [Arabidopsis
           thaliana] gi|19310675|gb|AAL85068.1| putative
           3-oxo-5-alpha-steroid 4-dehydrogenase [Arabidopsis
           thaliana]
          Length = 262

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +1

Query: 259 AVPVFLALIAGITAPYGRYVRSGWGIFLNARVAWLTQEIPSLIVFVVMLLLFSTPDSFLQ 438
           A P    L+  + APYG++ R+GWG  ++  +AW   E P+L    + LLLF     F +
Sbjct: 20  AGPPTAVLLKFLQAPYGKHNRTGWGPTVSPPIAWFVMESPTL---WLTLLLF----PFGR 72

Query: 439 HPLSART-VLSGAFCAHYVYRSIVFP 513
           H L+ ++ +L   +  HY +R+I++P
Sbjct: 73  HALNPKSLLLFSPYLIHYFHRTIIYP 98

>gb|AAC49264.1| steroid reductase DET2 [Arabidopsis thaliana]
          Length = 262

 Score = 50.4 bits (119), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +1

Query: 259 AVPVFLALIAGITAPYGRYVRSGWGIFLNARVAWLTQEIPSLIVFVVMLLLFSTPDSFLQ 438
           A P    L+  + APYG++ R+GWG  ++  +AW   E P+L    + LLLF     F +
Sbjct: 20  AGPPTAVLLKFLQAPYGKHNRTGWGPTVSPPIAWFVMESPTL---WLTLLLF----PFGR 72

Query: 439 HPLSART-VLSGAFCAHYVYRSIVFP 513
           H L+ ++ +L   +  HY +R+I++P
Sbjct: 73  HALNPKSLLLFSPYLIHYFHRTIIYP 98



EST assemble image


clone accession position
1 HC033d01_r AV634434 1 593
2 MX040c03_r BP087648 76 529
3 LC091c10_r AV625350 79 503
4 LC070b03_r AV623891 79 501
5 CM071f07_r AV391325 93 709
6 LC077h03_r AV624443 99 508
7 LC023g03_r AV620562 101 624
8 LC022f08_r AV620476 102 624
9 LC099c09_r AV625880 105 522




Chlamydomonas reinhardtii
Kazusa DNA Research Institute