KCC001628A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001628A_C01 KCC001628A_c01
cgcttatgagtgtgttacacgatgGACACAGCGTTGTGGATTATGGTCCTCGTCTCCTCG
TACTGCGCCGTGTCAGCGCCACCGTCGCCCAAGTTTTTAGTATTTTAGTCTTTTTTTATG
GCGACAGGGCCGGCCACAGTGTCACCTGCCACGCCAGTTGGTCCGCAGACCTTCAAACAC
CATCCAGATATTGTACGGGCGGCGGGCAGGTATCCTCAACGACCACCAACAACGAAATCC
AAAAAACACGAGGTCATATCCCGGGAAACCCACGGGCTGCAGTGCGGGCAAAACTCACAC
AGGGGCACTTCACCCCACTCAATTCACACTCTTGACCCACCAATCCACTGACTGACGCAC
GACATTGACTGTACACCATCTCCCAGGGCATCCCCGGGACACCAAGTAAAAATTCGAAGG
CCCTGCATTGGGCACCTCGCTGCGTGCTGTCCCAAGCTCTGGCTTTCTTGGGAATTGGTT
GGCGGCGACACACGCGCCAAGGACACACGCATTCAAACCGTTATGATGACACGCGCACAA
TGACACGCGCACAGAAGCCCAAGTGACATTGTAGGGACCGGGCCCCTCGGACCGGTCGTT
AC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001628A_C01 KCC001628A_c01
         (602 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK07183.1|AF317323_1 immunoglobulin lambda light chain V3 [A...    35  1.1
ref|NP_648321.2| CG32043-PA [Drosophila melanogaster] gi|2466166...    34  1.8
gb|AAL39574.1| LD13887p [Drosophila melanogaster]                      34  1.8
ref|XP_286371.1| hypothetical protein XP_286371 [Mus musculus]         33  2.4
gb|AAO47867.1| RH24480p [Drosophila melanogaster]                      33  2.4

>gb|AAK07183.1|AF317323_1 immunoglobulin lambda light chain V3 [Ambystoma mexicanum]
          Length = 119

 Score = 34.7 bits (78), Expect = 1.1
 Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 96  FSILVFFYGDRAGHSVTCHASWSADL-QTPSRYCTGGGQVSSTTTNNEIQKTRGHIP 263
           F +LV   G  A HSVT   S +A L QT    CT GG+++  T     Q+  G +P
Sbjct: 8   FGLLVLLTGSWAQHSVTQGPSMTASLGQTAKLSCTLGGELTIATNVAFFQQRFGRVP 64

>ref|NP_648321.2| CG32043-PA [Drosophila melanogaster] gi|24661666|ref|NP_729500.1|
           CG32043-PB [Drosophila melanogaster]
           gi|23093828|gb|AAF50261.2| CG32043-PA [Drosophila
           melanogaster] gi|23093829|gb|AAF50260.2| CG32043-PB
           [Drosophila melanogaster]
          Length = 783

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 29/101 (28%), Positives = 41/101 (39%), Gaps = 7/101 (6%)
 Frame = +1

Query: 124 TGPATVSPATPVGPQTFKHHPDIVRAAGRYPQRPPTTKSKKHEVISRETHGLQCGQNSHR 303
           T PA     TP  PQ  +    + +   +  Q+    + ++H +    TH     Q+SH 
Sbjct: 597 TMPAGAVAGTPTTPQ-HQQQQHLHQQHQQQQQQQQQQQQQQHMLQHPHTHPHPHAQHSHP 655

Query: 304 GTSPHSI-HTLDPPI------H*LTHDIDCTPSPRASPGHQ 405
            T PHS+ H L P          L H     PSP + P HQ
Sbjct: 656 HTLPHSLPHHLQPGTPTRSSHPQLQHPHHYPPSPHSHPHHQ 696

>gb|AAL39574.1| LD13887p [Drosophila melanogaster]
          Length = 479

 Score = 33.9 bits (76), Expect = 1.8
 Identities = 29/101 (28%), Positives = 41/101 (39%), Gaps = 7/101 (6%)
 Frame = +1

Query: 124 TGPATVSPATPVGPQTFKHHPDIVRAAGRYPQRPPTTKSKKHEVISRETHGLQCGQNSHR 303
           T PA     TP  PQ  +    + +   +  Q+    + ++H +    TH     Q+SH 
Sbjct: 293 TMPAGAVAGTPTTPQ-HQQQQHLHQQHQQQQQQQQQQQQQQHMLQHPHTHPHPHAQHSHP 351

Query: 304 GTSPHSI-HTLDPPI------H*LTHDIDCTPSPRASPGHQ 405
            T PHS+ H L P          L H     PSP + P HQ
Sbjct: 352 HTLPHSLPHHLQPGTPTRSSHPQLQHPHHYPPSPHSHPHHQ 392

>ref|XP_286371.1| hypothetical protein XP_286371 [Mus musculus]
          Length = 109

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +3

Query: 336 PTNPLTDARH*LYTISQGIPGTPSKNSKALHWAPRCVLSQALAFLG-----IGWRRHTRQ 500
           P  PL  ARH       G+PG   K    L WAP  ++   L  LG     +GW+  T  
Sbjct: 50  PAPPLRPARH---QARDGLPGIIQKQGGLLSWAPEDLVRSQLGGLGSSGPLLGWKLQTIV 106

Query: 501 G 503
           G
Sbjct: 107 G 107

>gb|AAO47867.1| RH24480p [Drosophila melanogaster]
          Length = 206

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 29/95 (30%), Positives = 41/95 (42%), Gaps = 7/95 (7%)
 Frame = +1

Query: 52  VSSYCAVSAPPSPKFLVF*SFFMATGPATVSPATPVG---PQTFKHHPDIVRAAGRYPQR 222
           +  Y  V+ PP+ +  +   F     P T SPA   G   PQ   H P    AA   PQ 
Sbjct: 15  LEGYKRVAWPPASEERIIREF--TPQPQTQSPAPGAGGYYPQA--HAPTAAAAAPPQPQL 70

Query: 223 P----PTTKSKKHEVISRETHGLQCGQNSHRGTSP 315
           P     T   ++ +   ++  G   GQ+S+RG SP
Sbjct: 71  PYSQDQTDLQQQQQQQQQQYPGAYAGQDSYRGASP 105



EST assemble image


clone accession position
1 CM087d05_r AV392486 1 496
2 CM071e12_r AV391330 19 602




Chlamydomonas reinhardtii
Kazusa DNA Research Institute