KCC001624A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001624A_C01 KCC001624A_c01
ctggcagacaccgaatgcaggcagcgcaaaggaatggatccatataggatttcaaatgat
gaagcaacgttctgctggcaTTCGCATCATACAGGCATGGCCGTGTGAAGAATGGGCTCG
CGGGATCACCGGGCCGCGCGGCACGTCAATTGTCAAGCCGTTTTATCATCACTGTGTGTC
GGTTCTTACGTTTGAGGCGCCTTGGGAGGGCTGCCGCTTGTTTGTTTGGTAGCTGGTACC
GGGGTGGGGCTTGGTTTTGATTGGGTCGTGGGATTGAGCTGGTCAATCCTCTTGAGCTGT
GCAGTCCTGCGCAACATCATGCTTGCGATGATTGTATGGACGGACACTGCAGCTGTCACA
TAATTCCTTGTGGCATGCATGCAGCATGATGCGCGTAGGACATGCACGTTTATTTATACG
GGTTCACCGTAAATTGCTTGCTTTATGGCTTGAGTCTGTTTGGTCCTTCCTTTCTTTCCC
AATGACACGCGTGTGTTGCATGAGGTTTTACGGGAGCCGGCTTGTAGGCTCGGCACTGGA
ATGGCATTGCGCATACGCATGCATGCATTTTGGTACTGGTCATGCGCACTGGTGCACTCT
GGTTTTTGCGTACGATGGTGCGCACCAAGGTCTTAAAGCAAGTTCGTGGCATGTGGCCGA
CAGGAAGAACGAGCGCCGTGGGGGGGCCGGCCTAACGGGGACTTGACTTACTGGTCCGTT
GCCTCAATGCACGGAACATCGGGGAGCACTGTGCGGCATCAGCTGTATCAGGGACGCGCT
TCCCATGCACGCGCCATCACTGCTGAAGTGGGGGTGTGGGTTGACGGTGGGTAAACGGTG
GGTCAACGGTGGGTCAACGGGCCTCTGAGGCCACCCATGTCAGCATGACACGGTGCAGTG
TGGTGGTAAGGTATGGTGGTTAGGTTGGTCTAGGGGGACCAGCAGCAGATGTCATGGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001624A_C01 KCC001624A_c01
         (959 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL27643.1| SD06513p [Drosophila melanogaster]                      39  0.10
ref|NP_723904.1| CG31732-PC [Drosophila melanogaster] gi|2608027...    37  0.38
ref|NP_723906.1| CG31732-PD [Drosophila melanogaster] gi|2294653...    37  0.38
ref|NP_723905.1| CG31732-PA [Drosophila melanogaster] gi|2294653...    37  0.38
ref|NP_525078.2| small conductance calcium-activated potassium c...    37  0.50

>gb|AAL27643.1| SD06513p [Drosophila melanogaster]
          Length = 564

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 20/57 (35%), Positives = 32/57 (56%)
 Frame = -3

Query: 342 RPYNHRKHDVAQDCTAQED*PAQSHDPIKTKPHPGTSYQTNKRQPSQGASNVRTDTQ 172
           R +   ++ VA +C  +   P+Q+  P KT   PG + +TNK+QP+   SN  T T+
Sbjct: 495 RKFEEEQNQVAIECDTKT--PSQTRKPTKTTKIPGATAKTNKQQPTTKPSNKPTTTK 549

>ref|NP_723904.1| CG31732-PC [Drosophila melanogaster] gi|26080275|ref|NP_609745.1|
           BG:DS05639.1 gene product [Drosophila melanogaster]
           gi|22946534|gb|AAF53447.2| CG31732-PC [Drosophila
           melanogaster] gi|25012424|gb|AAN71319.1| RE16347p
           [Drosophila melanogaster]
          Length = 578

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 342 RPYNHRKHDVAQDCTAQED*PAQSHDPIKTKPHPGTSYQTNKRQPSQGASNVRTDTQ 172
           R +   ++ V  +C  +   P+Q+  P KT   PG + +TNK+QP+   SN  T T+
Sbjct: 509 RKFEQEQNQVEIECDTKT--PSQTRKPTKTTKIPGATAKTNKQQPTPKPSNKPTTTK 563

>ref|NP_723906.1| CG31732-PD [Drosophila melanogaster] gi|22946536|gb|AAN10894.1|
           CG31732-PD [Drosophila melanogaster]
          Length = 564

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 342 RPYNHRKHDVAQDCTAQED*PAQSHDPIKTKPHPGTSYQTNKRQPSQGASNVRTDTQ 172
           R +   ++ V  +C  +   P+Q+  P KT   PG + +TNK+QP+   SN  T T+
Sbjct: 495 RKFEQEQNQVEIECDTKT--PSQTRKPTKTTKIPGATAKTNKQQPTPKPSNKPTTTK 549

>ref|NP_723905.1| CG31732-PA [Drosophila melanogaster] gi|22946535|gb|AAF53448.2|
           CG31732-PA [Drosophila melanogaster]
          Length = 614

 Score = 37.4 bits (85), Expect = 0.38
 Identities = 19/57 (33%), Positives = 31/57 (54%)
 Frame = -3

Query: 342 RPYNHRKHDVAQDCTAQED*PAQSHDPIKTKPHPGTSYQTNKRQPSQGASNVRTDTQ 172
           R +   ++ V  +C  +   P+Q+  P KT   PG + +TNK+QP+   SN  T T+
Sbjct: 545 RKFEQEQNQVEIECDTKT--PSQTRKPTKTTKIPGATAKTNKQQPTPKPSNKPTTTK 599

>ref|NP_525078.2| small conductance calcium-activated potassium channel CG10706-PE
           [Drosophila melanogaster] gi|22831729|gb|AAF46030.2|
           CG10706-PE [Drosophila melanogaster]
          Length = 573

 Score = 37.0 bits (84), Expect = 0.50
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 936 PLDQPNHHTLPPHCTVSC*HGWPQRPVDPPLTHRLPTVNPHPHFSSDGACMGS 778
           P+  P+  ++P     +  + WP  P+ PP++ R P + P  H  S+G+ + S
Sbjct: 512 PMLFPHSRSVPSSNNAAATYHWPTSPILPPISSRTPHLVPDTHMPSNGSAVNS 564



EST assemble image


clone accession position
1 LC036c06_r AV621447 1 537
2 CM071d02_r AV391336 415 986




Chlamydomonas reinhardtii
Kazusa DNA Research Institute