KCC001622A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001622A_C01 KCC001622A_c01
gagagagagagaactagtctcgagtttttttttttttttttttctgctccttgtgttaca
GCTGGTGACCTGCACGCGAGTGGGCGTGAGCGGCATGCGTGCAGCTCTGTCTCATTGATG
CCTCGGCTCCGAACAGAGATGGCTTCCAGGGTCGCTACGTACGGCCTCCTCTTCCTGTCA
CTCGTAAATGCAAATACGGTACCACCAATGCTACAACACTCACGGTACCAATGCTACAAC
ACTCACGCAGTCAGTGGTTTCTAGTTCAAGCTTGTACGTGATGCAACCCAACTCATCATC
ATTCAGCACTGCCTTGATTGAACGATAGTGTGTCATCGCCCATCACCGCGCCCACCTCTT
TATCATCCGCGTTTTCCAGGCCCACTAACCCAATAAAGCAGCTCATTATGCGGGCTGCTC
GTCACCACGGCCACAGCTCACTTCATTCTTTTAGCAGCACCCCGCACTCGTCATACTGTA
TCCTTGGTTGCATGTGCACGCAAGCACCGGCCACCTAAGCATCCATGCACACTCGGCTCG
AACCTGCAAACCAACGCAACCACCGAGTGGGCGGAGTGACATGGCTTTCAGCGAAAACAG
ACACGACGCCCGTCACATAGCCACCAAACCAAGTTGCGCCTTATTCCAAACAGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001622A_C01 KCC001622A_c01
         (654 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_727772.1| narrow abdomen CG1517-PB [Drosophila melanogast...    36  0.57
ref|NP_727773.1| narrow abdomen CG1517-PC [Drosophila melanogast...    36  0.57
gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophos...    35  1.3
ref|NP_741068.1| phospholipase C-L2 (3A995) [Caenorhabditis eleg...    35  1.3
pir||S53812 BmGATA beta isoform 3 - silkworm (fragment) gi|60316...    34  1.7

>ref|NP_727772.1| narrow abdomen CG1517-PB [Drosophila melanogaster]
           gi|22832728|gb|AAF48365.2| CG1517-PB [Drosophila
           melanogaster]
          Length = 2196

 Score = 35.8 bits (81), Expect = 0.57
 Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
 Frame = +3

Query: 294 HHHSALP*LNDSVSSPITAPTSLSSAFS-RPTNPIKQLIMRAARHHGHSSLHSFSSTPH 467
           HHH + P     +++P TA TS SS  S  P    +Q       HHGH   H    T H
Sbjct: 79  HHHHSHPYSTSGINTPATASTSSSSGNSLTPQQQQQQQHPHHQSHHGHHYAHHQQHTHH 137

>ref|NP_727773.1| narrow abdomen CG1517-PC [Drosophila melanogaster]
           gi|22832729|gb|AAN09585.1| CG1517-PC [Drosophila
           melanogaster]
          Length = 2148

 Score = 35.8 bits (81), Expect = 0.57
 Identities = 21/59 (35%), Positives = 26/59 (43%), Gaps = 1/59 (1%)
 Frame = +3

Query: 294 HHHSALP*LNDSVSSPITAPTSLSSAFS-RPTNPIKQLIMRAARHHGHSSLHSFSSTPH 467
           HHH + P     +++P TA TS SS  S  P    +Q       HHGH   H    T H
Sbjct: 79  HHHHSHPYSTSGINTPATASTSSSSGNSLTPQQQQQQQHPHHQSHHGHHYAHHQQHTHH 137

>gb|AAM09332.2| similar to Homo sapiens (Human). Dentin sialophosphoprotein precursor
            [Contains: Dentin phosphoprotein (Dentin phosphophoryn)
            (DPP); Dentin sialoprotein (DSP)] [Dictyostelium
            discoideum]
          Length = 1140

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 22/56 (39%), Positives = 32/56 (56%)
 Frame = +3

Query: 321  NDSVSSPITAPTSLSSAFSRPTNPIKQLIMRAARHHGHSSLHSFSSTPHSSYCILG 488
            N++ ++ +T+PT +SS  S PT+PI        + H HS+  S S TP SS   LG
Sbjct: 1029 NNNNNNNVTSPTIVSSP-SSPTSPISPTSSTFIKGHSHSN--SLSQTPSSSSSSLG 1081

>ref|NP_741068.1| phospholipase C-L2 (3A995) [Caenorhabditis elegans]
           gi|25112181|gb|AAN72422.1| Hypothetical protein
           K10F12.3a [Caenorhabditis elegans]
          Length = 1075

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 21/66 (31%), Positives = 25/66 (37%)
 Frame = +2

Query: 416 CSSPRPQLTSFF*QHPALVILYPWLHVHASTGHLSIHAHSARTCKPTQPPSGRSDMAFSE 595
           C  P  QL   F  H     LY  +     T   SI  H  R   P    SGR  ++FS 
Sbjct: 6   CLEPEEQLCPIFGLHYIFFTLYFHMDFFGKTLRSSIIKHGGRAKSPAGTGSGRKTVSFSS 65

Query: 596 NRHDAR 613
              DA+
Sbjct: 66  KNSDAK 71

>pir||S53812 BmGATA beta isoform 3 - silkworm (fragment)
           gi|603166|gb|AAA67887.1| BmGATA beta isoform 3
          Length = 241

 Score = 34.3 bits (77), Expect = 1.7
 Identities = 20/53 (37%), Positives = 25/53 (46%)
 Frame = +1

Query: 412 GLLVTTATAHFILLAAPRTRHTVSLVACARKHRPPKHPCTLGSNLQTNATTEW 570
           G L+    A   L A  RTR  + L    RK    K P T+ +N QT AT+ W
Sbjct: 14  GFLLNGIQASHALPAPQRTRVPILLTTSRRKGMAAKRPGTMCTNCQTTATSLW 66



EST assemble image


clone accession position
1 LC077c10_r AV624404 1 416
2 CM071a11_r AV391346 54 654




Chlamydomonas reinhardtii
Kazusa DNA Research Institute