KCC001620A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001620A_C01 KCC001620A_c01
ttgaactacttactttgacgtgcgtttgactacctgactgacctaagtctgaccggagga
ggaggcagcatgctgattggCAGGTGTTATGTGCGTGGGGTTGCGCGCTCGCAACTACCC
AGCTTCCACGCATGCAACATGCAAGCCGGGTGCTCGCGCTTTGGTGGCATTTCCTTAGTA
ACCCCGCCTGCACTTTACAATTGCATACAGCCACTGAGTGTATCATGTTTTGTGTGCATG
GCCACGCGGCCAGGCGGCAGCGAAGAGCGCAATACCGTGTTTGAAACGAATGAAGCAGGA
GCAAGCGTATGGTGTGAGATACGAGTCAATGTGGTTACAGGAAATGCGGCATGCCGTAGG
GCAGATGGCGAAGTAGTCGCTACTAGCCCCTGAACCCGTGCACGAGTTGTCTTAGGCATT
GTGTACTGCACACGACGAGCCGCACAAAGGTGGTTGCAGCCTGACAAGCGTCGGACAGAC
TTGCGGACCGTGCCGGAATGTGCCGTTTTGAGCATTTGCCAGACGCTACGCACAGTCGCT
GCAGTTTACCGCAAGGCCAAAGCGCAGCGAGGCAGGCAGATCGTGCGGGGGGTTGTGTGA
GACTGGGCCATGCAATGAGCGTGTGCCAGCTCTACGAATGTATGATACAGAACTAGCATG
ACCGCAGTGAAGACTTGCGGGGGCCAGATAGCTGGGACGGCGGGTGCTGCATCGCGGGCC
GGGAGGCAAGGCCATGCTAATGCGCGACTTCGCGTGACGCGTTGTCGGGACGGCTGGCGA
TCAAGGATGCTGACCGGCACTACTTGAGCAACGCGGTGCATGTACGACGAAGGCATTTGT
TCGACGCGCAGCGTAATAAGGGAACCATGTTGAGGATGTCGATGTCGGTTGTTGCCTCCG
GCGTTGTGCTGGTGGCTTTGGTGTCCGGTTGGGCGTGACTGCAGACTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001620A_C01 KCC001620A_c01
         (948 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_767913.1| mdcG [Bradyrhizobium japonicum] gi|27349524|dbj...    38  0.29
ref|XP_311484.1| ENSANGP00000013716 [Anopheles gambiae] gi|30177...    37  0.37
gb|AAN28957.1| Wal1 protein [Eremothecium gossypii]                    37  0.49
emb|CAD32238.1| BP-5 protein [Oryza sativa]                            36  1.1
ref|NP_446118.1| delta-like 3; delta (Drosophila)-like 3 [Rattus...    36  1.1

>ref|NP_767913.1| mdcG [Bradyrhizobium japonicum] gi|27349524|dbj|BAC46538.1| mdcG
           [Bradyrhizobium japonicum USDA 110]
          Length = 215

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = -1

Query: 849 ARRTNAFVVHAPRCSSSAGQHP*SPAVPTTRHAKSRISMALPPGPRCSTRRPSYLAPAS 673
           AR     +V  P CS +AG  P    +P + H K RI+ AL PG   ++  P  LA A+
Sbjct: 38  ARADRPLIVRRPACSDAAGMIPLGLPLPPS-HGKRRIAFALAPGDIIASAPPPSLADAA 95

>ref|XP_311484.1| ENSANGP00000013716 [Anopheles gambiae] gi|30177672|gb|EAA07201.2|
           ENSANGP00000013716 [Anopheles gambiae str. PEST]
          Length = 1646

 Score = 37.4 bits (85), Expect = 0.37
 Identities = 33/124 (26%), Positives = 42/124 (33%), Gaps = 1/124 (0%)
 Frame = -1

Query: 936 TPNRTPKPPAQRRRQQPTSTSSTWFPYYAARRTNAFVVHAPRCSSSAGQH-P*SPAVPTT 760
           TP  +P PP Q   Q P  + S   PY  A   +      P    + G H P     P  
Sbjct: 5   TPQNSPMPPPQAPSQSPAPSPSPHSPYQQAPPPHPGQSQGPPHMPTPGHHVPPQAGPPPG 64

Query: 759 RHAKSRISMALPPGPRCSTRRPSYLAPASLHCGHASSVSYIRRAGTRSLHGPVSHNPPHD 580
            H    +SM  PP P        +  P   H  H +        G +   G     PPH 
Sbjct: 65  PH----MSMQGPPTPHGGQPPNPHGPPPPQHPSHMNGPP----PGPQGAPGHGPGGPPHH 116

Query: 579 LPAS 568
           +P S
Sbjct: 117 MPPS 120

>gb|AAN28957.1| Wal1 protein [Eremothecium gossypii]
          Length = 732

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 34/122 (27%), Positives = 47/122 (37%), Gaps = 6/122 (4%)
 Frame = -1

Query: 933 PNRTPKPPAQRRRQQPTSTSSTWFPYYAARRTNAFVVHAPRCSSSAGQHP*SPAVPTTRH 754
           P R P PP  R+R  P ++ +T          +  + H P  +S  G  P  P  P    
Sbjct: 468 PRRGPAPPPPRKRAGPVTSHAT-----GPSNMSLPMAHQPLTASKTGGRPGPPVPP---- 518

Query: 753 AKSRISMALPPGPRCSTRRPSYLAPASLHCGH------ASSVSYIRRAGTRSLHGPVSHN 592
              R S   PP PR  T RP+ +  A+    H       SS   +  A   +L  P  + 
Sbjct: 519 ---RRSTGPPPPPR--THRPAEVETAAAVSYHPPTTFTTSSQHNVMPAPGPALQQPQGYM 573

Query: 591 PP 586
           PP
Sbjct: 574 PP 575

>emb|CAD32238.1| BP-5 protein [Oryza sativa]
          Length = 335

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 25/80 (31%), Positives = 36/80 (44%)
 Frame = -1

Query: 936 TPNRTPKPPAQRRRQQPTSTSSTWFPYYAARRTNAFVVHAPRCSSSAGQHP*SPAVPTTR 757
           T   T +PP +RRR  PT+ S+   P   +RR  A        S+S    P +P  P   
Sbjct: 91  TATATRRPPWRRRRGGPTAASAP--PPPRSRRAPA----TGAASASGSTPPRTPRAPART 144

Query: 756 HAKSRISMALPPGPRCSTRR 697
            ++SR+    PP    + RR
Sbjct: 145 RSRSRLVARKPPAKMTTARR 164

>ref|NP_446118.1| delta-like 3; delta (Drosophila)-like 3 [Rattus norvegicus]
           gi|12229780|sp|O88671|DLL3_RAT Delta-like protein 3
           precursor (Drosophila Delta homolog 3)
           gi|3493164|gb|AAC33303.1| Delta 3 [Rattus norvegicus]
          Length = 589

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
 Frame = +3

Query: 495 GMCRFEHLPDATHSRCSLP---QGQSAARQADRA--------GGCVRLGHAMSV-CQLYE 638
           G+C     PD+ +  C  P   QG +  R+ DR         G C+ LGHA+   C+   
Sbjct: 327 GLCVGGEDPDSAYV-CHCPPAFQGSNCERRVDRCSLQPCQNGGLCLDLGHALRCRCRAGF 385

Query: 639 CMIQN*HDRSEDLRGPDSWDGGCCIAGREARPC*CA 746
              +  HD  +D  G    +GG C+ G  AR C CA
Sbjct: 386 AGPRCEHDL-DDCAGRACANGGTCVEGGGARRCSCA 420



EST assemble image


clone accession position
1 LC076e05_r AV624348 1 547
2 CM070h11_r AV391292 336 948




Chlamydomonas reinhardtii
Kazusa DNA Research Institute