KCC001616A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001616A_C01 KCC001616A_c01
CACTTGAAAATCACACGAACTCTAAGCGGGCCAACTGGTGCTGAGCAAAGTTACTATCTG
TCGACATTTCTTGTGCTTTCCTCGATTTACAAATGTCGCTCGCTCTCCCAGGCAGCTCAC
AAGTGTTGTTTGCGAAATGCAGGCGTCAACAGGCGCGGGTGAGGGGCCTGGCTTGCCCGC
TAGGGTTCACATACGCCAGCAAACACCAGCTGAAGCCTGCGCGCTTTTAATATCCATAGG
TATGCATTCGCAACTCGCCAGTGGTGATCTTCACTCGTCGAGGCCAGCCGGCGCGGGCAC
TGCCGGAGAAGGCGGCGGGTAGCACGATAGACATCAAAAAGCTGTCGGACATCATCACGG
CGCAGGCGCTCGACGGCGGGGAACAGCAATACAAGCTGGAGGAGCTGGCCAAGGCGCTGG
GCGAGCCGCTGGCGGTGGTGCGCAACATGGCGTTCCGGCAGAAGGCGCTGCTGGGGCTGG
AGGCGGCGGAGCTCAAGGCCAAGATTGAGGAGGTCGCCAAGATCGTTGACGTGTCGTACG
AGAAGGCGCGGCAGATGGCGGTCATCCAGCCGCTGCTGCTGACGGAGACGCAGAAGCAGG
CTGAGGCACTGTCCTACGGGCTGCGCATCATCTGCCATGACCTAAAGGCGCCCCGGGAGG
AGATCGTTGACATCATCATCAACAACCCCACGCTGCTGCACGGCCGCAGCATGCGCCTGT
CCGCTGCCGACATGGCGCACCTGGCGCTGCTGCGCGTGCCGAAGGGCCGCATCGTGGACT
GAGCGGTGTGCCTCCGGCAGCGGCGAGGGCTGTAACCGTTGGGGAGGGCCGGTGTCGGCA
GTGGACGCTGCGGCGCGCGGGTGAGCAGCGGCGGCTGGTGGGCTATGGAGTGGCACTTGG
CGGATCAACGCGCGTTTGCAAGCGCGGGTGGGGAGTTGCTCTGTATATGTGAGCCGCTGT
GTTGACCCCGCTGTATGGACCATACAAGCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001616A_C01 KCC001616A_c01
         (991 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|...    72  1e-11
ref|ZP_00009817.1| COG2885: Outer membrane protein and related p...    69  1e-10
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA...    67  5e-10
dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvir...    67  5e-10
emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultiva...    67  6e-10

>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
           blr0521 [Bradyrhizobium japonicum USDA 110]
          Length = 745

 Score = 72.0 bits (175), Expect = 1e-11
 Identities = 71/202 (35%), Positives = 72/202 (35%), Gaps = 22/202 (10%)
 Frame = -2

Query: 825 SPTVTALA-----AAGGTPLSPRCGPSARAAAPGAPCRQRTGACCGRAAAWGC***CQRS 661
           SP V A A        G P  P  GP   AA P AP R    A    AAA          
Sbjct: 30  SPLVVAQAQPQETGPDGKPKQPPKGPPG-AAPPAAPARP---AAPPPAAA---------- 75

Query: 660 PPGAPLGHGR*CAARRTVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRP---PQSWP*A 490
           PP  P       A  R    P    P AA    PP   P    +Q S  P   PQ     
Sbjct: 76  PPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAPQQHAPT 135

Query: 489 PPPPAPAA------PSAGTPCCAP--------PPAARPAPWPAPPACIAVPRRRAPAP** 352
           PPPPAP A      P A  P  AP        PPAARP P P PP       R  PAP  
Sbjct: 136 PPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPAARPTPTPPPPPPAGPAARPTPAPTA 195

Query: 351 CPTAF*CLSCYPPPSPAVPAPA 286
            PT        P   P  PAPA
Sbjct: 196 TPTPVAPPPAAPTARPGSPAPA 217

 Score = 61.2 bits (147), Expect = 3e-08
 Identities = 65/214 (30%), Positives = 75/214 (34%), Gaps = 9/214 (4%)
 Frame = -2

Query: 903 PPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPRCGPSARAAAPG-APCR 727
           PP+A P PT     PA    H    P P      AA  TP  P   P+  AA P  AP  
Sbjct: 141 PPAARPAPTPPAPPPAAAPQHAPPPPPPP-----AARPTPTPPPPPPAGPAARPTPAPTA 195

Query: 726 QRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASASPSAAAAG*PPSAA 547
             T                   PP AP              +P S +P+A  A   P+ A
Sbjct: 196 TPTPVA---------------PPPAAPTA------------RPGSPAPAATPAP-TPTPA 227

Query: 546 PSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPP-------PAARPAPWPAP-PAC 391
           P+ T    +   P S P APP   P AP  G    +PP       P A PAP   P P  
Sbjct: 228 PTATPAPTATPAPGSTPGAPPAGRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTPAPGG 287

Query: 390 IAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAP 289
            A P    P P          +  P P  A PAP
Sbjct: 288 TATPPSGRPGP----------ASTPAPGAATPAP 311

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 73/245 (29%), Positives = 89/245 (35%), Gaps = 16/245 (6%)
 Frame = -2

Query: 942 RATPHPRLQ-TRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPL---SP 775
           R TP P    T V PP A P  T+R  SPA  +      P+P  TA  A   TP    +P
Sbjct: 188 RPTPAPTATPTPVAPPPAAP--TARPGSPAPAATPAP-TPTPAPTATPAPTATPAPGSTP 244

Query: 774 RCGPSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAAR---RTVP 604
              P+ R  AP    R  +    G   A G       +P  AP G     + R    + P
Sbjct: 245 GAPPAGRPGAPPPGVRPGSPPAAGSPPAPGATPAPTTTP--APGGTATPPSGRPGPASTP 302

Query: 603 QPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTP-------- 448
            P +A+P+  A   P  A      R  +   P      PP  APAA +   P        
Sbjct: 303 APGAATPAPTATPAPGGALTPPPGRPGAGPTPGPQGGTPPAGAPAAGTPAAPPQAGGLPA 362

Query: 447 -CCAPPPAARPAPWPAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAPAGLDE* 271
              AP  AA P+  P   A    P R   AP     AF        P P  P P   D  
Sbjct: 363 RPAAPAGAAAPSTVPGSAAATPPPNRAQFAPPTVTPAFQAAPTVVAPLPPPPRPPQRD-- 420

Query: 270 RSPLA 256
            +PLA
Sbjct: 421 LTPLA 425

 Score = 54.3 bits (129), Expect = 3e-06
 Identities = 40/106 (37%), Positives = 43/106 (39%)
 Frame = -2

Query: 612 TVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPP 433
           T      ASP   A   P    P    +Q    PP + P    P APA P+A      PP
Sbjct: 22  TASHAQGASPLVVAQAQPQETGPDGKPKQPPKGPPGAAP----PAAPARPAA-----PPP 72

Query: 432 PAARPAPWPAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVP 295
            AA P P  APP   A PR  AP P   P A       PPP PA P
Sbjct: 73  AAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPAPPPPPPPPAAP 118

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 54/190 (28%), Positives = 59/190 (30%), Gaps = 6/190 (3%)
 Frame = -2

Query: 939 ATPHPRLQTRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTP------LS 778
           ATP P   T    P  T  P S R  PA         P+PT T       TP        
Sbjct: 275 ATPAP---TTTPAPGGTATPPSGRPGPASTPAPGAATPAPTATPAPGGALTPPPGRPGAG 331

Query: 777 PRCGPSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQP 598
           P  GP       GAP     G       A G       + P AP G     AA  TVP  
Sbjct: 332 PTPGPQGGTPPAGAPA---AGTPAAPPQAGGL-----PARPAAPAG----AAAPSTVPGS 379

Query: 597 ASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPPPAARP 418
           A+A+P                       PP     APP   PA  +A T     PP  RP
Sbjct: 380 AAATP-----------------------PPNRAQFAPPTVTPAFQAAPTVVAPLPPPPRP 416

Query: 417 APWPAPPACI 388
                 P  I
Sbjct: 417 PQRDLTPLAI 426

>ref|ZP_00009817.1| COG2885: Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins
           [Rhodopseudomonas palustris]
          Length = 689

 Score = 68.9 bits (167), Expect = 1e-10
 Identities = 64/192 (33%), Positives = 76/192 (39%), Gaps = 3/192 (1%)
 Frame = -2

Query: 828 PSPTVTALAAAGGTPLSPRCGPSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGA 649
           P+P  +   A    P  PR  P+   AAP AP      A    A            PP  
Sbjct: 43  PAPAPSEEKAKEAPPPGPRPAPAPPKAAPSAPPPPPAAAPPHVA------------PPPP 90

Query: 648 PLGHGR*CAARRTVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPA 469
           P    R  AA    P  A+ +P+   A  PP   PS +       PP + P  PP P P+
Sbjct: 91  PPAPPR--AAPPPPPPAAAPAPAPKRAEPPPPPPPSHSAPPPP--PPHAAPPPPPAPKPS 146

Query: 468 APSAGTPC---CAPPPAARPAPWPAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAV 298
           AP    P     APPPAA P   PAPPA  A P+RR P P   P          PP+ A 
Sbjct: 147 APPTAAPAERPAAPPPAAAPVRPPAPPAGEA-PQRRGPPPGAVPPN------AVPPNAAA 199

Query: 297 PAPAGLDE*RSP 262
           P  A  D  + P
Sbjct: 200 PDAAKPDAAKQP 211

 Score = 63.2 bits (152), Expect = 7e-09
 Identities = 65/223 (29%), Positives = 77/223 (34%), Gaps = 11/223 (4%)
 Frame = -2

Query: 927 PRLQTRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAA----AGGTPLSPRCGPS 760
           PR      PP+A P P  +R  P          P P     A     A      P   P+
Sbjct: 95  PRAAPPPPPPAAAPAPAPKRAEPPPPPPPSHSAPPPPPPHAAPPPPPAPKPSAPPTAAPA 154

Query: 759 ARAAAP---GAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASA 589
            R AAP    AP R                      PP  P G     A +R  P P + 
Sbjct: 155 ERPAAPPPAAAPVR----------------------PPAPPAGE----APQRRGPPPGAV 188

Query: 588 SPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAP-SAGTPCCAPPPAARPAP 412
            P+A     PP+AA     +  + + P      PPP AP  P +A  P   PPP   P  
Sbjct: 189 PPNAV----PPNAAAPDAAKPDAAKQPPGERRGPPPGAPGTPPNATAPGMTPPPGEAPRR 244

Query: 411 WPAPPACIAVPRRRA---PAP**CPTAF*CLSCYPPPSPAVPA 292
            P PP   A P   A   PAP   P A        P SPA P+
Sbjct: 245 GPPPPPAAANPPPAAAPTPAPSAAPQA-------APTSPANPS 280

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 61/195 (31%), Positives = 70/195 (35%), Gaps = 7/195 (3%)
 Frame = -2

Query: 939 ATPHPRLQTRVDPPSAT---P*PTSRRCSPARRSVHCRHRPSPTVTALA--AAGGTPLSP 775
           A   P  + R  PP A    P  T+   +P       R  P P   A    AA  TP +P
Sbjct: 207 AAKQPPGERRGPPPGAPGTPPNATAPGMTPPPGEAPRRGPPPPPAAANPPPAAAPTP-AP 265

Query: 774 RCGPSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSP-PGAPLGHGR*CAARRTVPQP 598
              P A   AP +P      A    A   G     +R P PGAP G           PQ 
Sbjct: 266 SAAPQA---APTSPANPSGPAVAPVARPSG-----ERGPQPGAPAG------GPPPRPQA 311

Query: 597 ASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APP-PPAPAAPSAGTPCCAPPPAAR 421
              +P A  A  PP   P     Q   +PP     APP PP PA  +   P   PP A  
Sbjct: 312 GPGAPGAGPAVAPPPGQPQPVPPQPG-QPPAGPAVAPPAPPPPAVTAPIPPAPPPPQALT 370

Query: 420 PAPWPAPPACIAVPR 376
           P    AP A    PR
Sbjct: 371 PI---APGAQAPGPR 382

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 74/249 (29%), Positives = 87/249 (34%), Gaps = 53/249 (21%)
 Frame = -2

Query: 945 YRATPHPRLQTRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTP--LSPR 772
           + A P P       PP+A P    R  +P   +   R    P   A    G  P  + P 
Sbjct: 134 HAAPPPPPAPKPSAPPTAAP--AERPAAPPPAAAPVRPPAPPAGEAPQRRGPPPGAVPPN 191

Query: 771 CGPSARAAAPGA--------PCRQRTGACCG------RAAAWGC***CQRSPPGAPLGHG 634
             P   AAAP A        P  +R G   G       A A G        PPG      
Sbjct: 192 AVPP-NAAAPDAAKPDAAKQPPGERRGPPPGAPGTPPNATAPG-----MTPPPGE----- 240

Query: 633 R*CAARRTVPQPASASPSAAAAG*P-PSAAP------------------SRTTRQRSWRP 511
                R   P PA+A+P  AAA  P PSAAP                  +R + +R  +P
Sbjct: 241 --APRRGPPPPPAAANPPPAAAPTPAPSAAPQAAPTSPANPSGPAVAPVARPSGERGPQP 298

Query: 510 --PQSWP*APPPPAPAAPSAGTPCCAPPPA-------------ARPA---PWPAPPACIA 385
             P   P   P   P AP AG P  APPP              A PA   P P PPA + 
Sbjct: 299 GAPAGGPPPRPQAGPGAPGAG-PAVAPPPGQPQPVPPQPGQPPAGPAVAPPAPPPPA-VT 356

Query: 384 VPRRRAPAP 358
            P   AP P
Sbjct: 357 APIPPAPPP 365

>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
           extensin [Volvox carteri]
          Length = 464

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 75/246 (30%), Positives = 91/246 (36%), Gaps = 19/246 (7%)
 Frame = -2

Query: 966 VNTAAHIYRATPHP----RLQTRVDPP---SATP*PTSRRCSPARRSVHCRHRPSPTVTA 808
           V  AA + + TP P    R+ T   PP   S++P P +R   P R +      PSP +TA
Sbjct: 209 VTAAAVVVQTTPSPPPPPRVSTSPPPPARVSSSPPPATRSPPPRRIT-----SPSPVLTA 263

Query: 807 LAAAGGT--PLSPRCGPSAR--AAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLG 640
                 T  P  PR  PS     A+P  P   R                   SPP     
Sbjct: 264 SPPLPKTSPPPPPRVPPSPPPPVASPPPPPPPRVSP----------------SPPP---- 303

Query: 639 HGR*CAARRTVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPA--- 469
                      PQP S+ P        PS  P R++   S  PP   P +PPPP P+   
Sbjct: 304 -----------PQPVSSPPPPPPPRPSPSPPPPRSSP--SPPPPSPPPPSPPPPRPSPSP 350

Query: 468 -----APSAGTPCCAPPPAARPAPWPAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSP 304
                +PS   P  +PPP    A  P PPA    P  R P P             PPPSP
Sbjct: 351 PPPRSSPSPPPPVVSPPPPPPRASPPPPPASSPPPPPRPPPP------------SPPPSP 398

Query: 303 AVPAPA 286
             PA A
Sbjct: 399 PPPATA 404

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 56/191 (29%), Positives = 62/191 (32%), Gaps = 4/191 (2%)
 Frame = -2

Query: 933 PHPRLQTRVDPPSATP*-PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPRCGPSA 757
           P PR      PPS  P  P   R SP+         P P V +       P  PR  P  
Sbjct: 323 PPPRSSPSPPPPSPPPPSPPPPRPSPSPPPPRSSPSPPPPVVS-----PPPPPPRASPPP 377

Query: 756 RAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASASPSA 577
             A+   P                      R PP +P               P S  P A
Sbjct: 378 PPASSPPPP--------------------PRPPPPSP---------------PPSPPPPA 402

Query: 576 AAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPPPAARPAPW---P 406
            AA  PPS APSR+   R+  PP      PPPP   AP        PP    P P    P
Sbjct: 403 TAAANPPSPAPSRS---RAGGPPLGTRPPPPPPEDDAP--------PPDYYFPPPQDMSP 451

Query: 405 APPACIAVPRR 373
            PP   A  RR
Sbjct: 452 PPPKKKATGRR 462

 Score = 43.5 bits (101), Expect = 0.006
 Identities = 57/217 (26%), Positives = 70/217 (31%)
 Frame = -2

Query: 939 ATPHPRLQTRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPRCGPS 760
           A+P P    RV P    P P S    P       R  PSP     + +   P  P   P 
Sbjct: 287 ASPPPPPPPRVSPSPPPPQPVSSPPPPPPP----RPSPSPPPPRSSPSPPPPSPPPPSPP 342

Query: 759 ARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASASPS 580
               +P  P  + + +                SPP  P         R + P P ++SP 
Sbjct: 343 PPRPSPSPPPPRSSPSPPPPVV----------SPPPPP--------PRASPPPPPASSPP 384

Query: 579 AAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPPPAARPAPWPAP 400
                 PPS  PS         PP +    PP PAP+   AG     PP   RP P P  
Sbjct: 385 PPPRPPPPSPPPSPP-------PPATAAANPPSPAPSRSRAG----GPPLGTRPPPPP-- 431

Query: 399 PACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAP 289
                 P   AP P            +PPP    P P
Sbjct: 432 ------PEDDAPPP---------DYYFPPPQDMSPPP 453

>dbj|BAC58076.2| large tegument protein [Cercopithecine herpesvirus 1]
          Length = 3326

 Score = 67.0 bits (162), Expect = 5e-10
 Identities = 69/223 (30%), Positives = 82/223 (35%), Gaps = 3/223 (1%)
 Frame = -2

Query: 939  ATPHPRLQTRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPR--CG 766
            A PHP       P   TP PTS   +P   +      P P          +P +P     
Sbjct: 2793 ADPHP-------PGPETPTPTSPTANPHATTASATPAPPPVAATGPTRPTSPATPTPTVA 2845

Query: 765  PSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASAS 586
             + RA+AP AP      A     AA           P AP       A        A A+
Sbjct: 2846 AAGRASAPPAPAAPAAPAAPAAPAA-----------PAAPAAPAAPAAPAAPAAPAAPAA 2894

Query: 585  PSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPA-PAAPSAGTPCCAPPPAARPAPW 409
            P+A AA   P+A  +              P AP  PA PAAP+A     AP PAA PA  
Sbjct: 2895 PAAPAAPAAPAAPAA--------------PAAPAAPAAPAAPAAPAAPAAPAPAAVPAAP 2940

Query: 408  PAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAPAGL 280
             AP A  A     APA    P A        P +PA PAPA +
Sbjct: 2941 AAPAAPAAPAAPAAPAAPAAPAA--------PAAPAAPAPAAV 2975

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 68/223 (30%), Positives = 79/223 (34%), Gaps = 22/223 (9%)
 Frame = -2

Query: 939  ATPHPRLQ--TRVDPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPRCG 766
            A PH      T   PP A   PT R  SPA         P+PTV A   A   P      
Sbjct: 2810 ANPHATTASATPAPPPVAATGPT-RPTSPAT--------PTPTVAAAGRASAPPAPAAPA 2860

Query: 765  PSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASAS 586
              A  AAP AP      A     AA         + P AP       A        A A+
Sbjct: 2861 APAAPAAPAAPAAPAAPAAPAAPAAPAAP--AAPAAPAAPAAPAAPAAPAAPAAPAAPAA 2918

Query: 585  PSAAAAG*PPSA-APSRTTRQRSWRPPQSWP*APPPPA-PAAPSAGTPCCAPPPAA---- 424
            P+A AA   P+A AP+      +     + P AP  PA PAAP+A     AP PAA    
Sbjct: 2919 PAAPAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAPAAVPVV 2978

Query: 423  --------------RPAPWPAPPACIAVPRRRAPAP**CPTAF 337
                           PAP   P + +  P    P P   P AF
Sbjct: 2979 VPAPTATLTATTTTSPAPAATPASPVPTPTSSLPTPPSKPPAF 3021

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 68/231 (29%), Positives = 86/231 (36%), Gaps = 6/231 (2%)
 Frame = -2

Query: 963  NTAAHIYRATPHPRLQTRVDP--PSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGG 790
            N  A    ATP P       P  P++   PT    +  R S      P+P   A  AA  
Sbjct: 2811 NPHATTASATPAPPPVAATGPTRPTSPATPTPTVAAAGRASAP----PAPAAPAAPAAPA 2866

Query: 789  TPLSPRC--GPSARAA--APGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CA 622
             P +P     P+A AA  AP AP      A     AA         + P AP       A
Sbjct: 2867 APAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAAPAA-----PAAPAAPAAPAA-PA 2920

Query: 621  ARRTVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCC 442
            A      PA+ +P+A  A     AAP+      +   P + P AP  PA           
Sbjct: 2921 APAAPAAPAAPAPAAVPAAPAAPAAPAAPAAPAAPAAPAA-PAAPAAPA----------- 2968

Query: 441  APPPAARPAPWPAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAP 289
            AP PAA P   PAP A +      +PAP   P      S  P P+ ++P P
Sbjct: 2969 APAPAAVPVVVPAPTATLTATTTTSPAPAATPA-----SPVPTPTSSLPTP 3014

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 61/214 (28%), Positives = 75/214 (34%), Gaps = 9/214 (4%)
 Frame = -2

Query: 903  PPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPRCGPSARAAAPGAPCRQ 724
            P S  P PTS   +P  +      +PS       A GG     R      AA P AP R 
Sbjct: 3000 PASPVPTPTSSLPTPPSKPP-AFFQPSLATGGSVAPGGD-FRRRAPSRPTAAVPAAPSR- 3056

Query: 723  RTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRT----VPQPASASPSAAAAG*PP 556
                                 PP   L   R   +R T    +P    A P    A  PP
Sbjct: 3057 ---------------------PPARRLA--RPAVSRSTESFALPPDELARPRTPEAPAPP 3093

Query: 555  SAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPPPAARPAP--WPAPPACIAV 382
            +        +R   PP+  P    PP+PAAP AG    + P    PAP      P  +AV
Sbjct: 3094 TETEEAPVAERP-APPE--PPQGRPPSPAAPDAGPAAASGPSGGVPAPRLGALVPGRVAV 3150

Query: 381  PRRRAPAP**CPTAF*CLSCYPP---PSPAVPAP 289
            PRR+ P P             PP   P+P+ P P
Sbjct: 3151 PRRQIPPP------------APPREIPAPSPPPP 3172

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 64/238 (26%), Positives = 81/238 (33%), Gaps = 22/238 (9%)
 Frame = -2

Query: 936  TPHPRLQTRV------------DPPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAG 793
            T HPR+ T +            DPP   P P +R  +P R     R  P P+  A+ +  
Sbjct: 2607 TVHPRMLTWIRGLEELASDDAGDPPPPLP-PAARPAAPDRSVPPPRPAPRPSEPAVQSRA 2665

Query: 792  GTPLSPRCGPSARAAAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARR 613
              P +P      ++A P  P                      R  PG P       AA  
Sbjct: 2666 RRPDAP-----PQSARPRTP----------------------RDDPGPP-------AAPS 2691

Query: 612  TVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPA---APSAGTPCC 442
            T+P   S  P A     PP   PS    +       + P AP PP P    AP       
Sbjct: 2692 TLPP--SPPPPAPHPPDPPPPDPSPRPNELGGGETAAAPSAPDPPPPQTVRAPERPRDDR 2749

Query: 441  APPPAARPAPW-------PAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAP 289
            AP P     P        PAP + +  PRRRA  P     +   L+   PP P  P P
Sbjct: 2750 APAPGRVSLPRRASRQGRPAPSSPLQRPRRRAARP--AVGSLTNLADPHPPGPETPTP 2805

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 58/195 (29%), Positives = 70/195 (35%), Gaps = 13/195 (6%)
 Frame = -2

Query: 903 PPSATP*PTSRRCSPARRSVHCRHRPSP----TVTALAAAGGTPLSPRCGP-----SARA 751
           PPS+    ++ R  P R S+  R R S     T  +  + G     P  GP     ++R 
Sbjct: 358 PPSSLEDLSAGRHHPKRASLPTRTRRSARHAATPFSRGSGGDEQTRPAAGPRPPTPASRP 417

Query: 750 AAPGAPCRQRTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASASPSAAA 571
             PGAP         G               PGAP        A    P PA   P+ A 
Sbjct: 418 PTPGAPPTPGAPPTPGAPPT-----------PGAPPTPAGPTTASSEPPTPAGRPPTPA- 465

Query: 570 AG*PPSAAPSRTTRQRSWRPPQSWP*APPPPAPAAPSAGTPCCAPPPAARPAPWPAPPAC 391
            G PP+ A    T   + RPP      PP PA   P   TP   PP  A   P PA P  
Sbjct: 466 -GRPPTPAGRPPTP--AGRPPTPAG-RPPTPAGRPP---TPAGRPPTPAGRPPTPANPTA 518

Query: 390 IAVP----RRRAPAP 358
            + P       APAP
Sbjct: 519 SSEPPTPNPEGAPAP 533

>emb|CAE03119.1| OSJNBa0067K08.27 [Oryza sativa (japonica cultivar-group)]
          Length = 508

 Score = 66.6 bits (161), Expect = 6e-10
 Identities = 63/204 (30%), Positives = 83/204 (39%), Gaps = 4/204 (1%)
 Frame = -2

Query: 903 PPSATP*PTSRRCSPARRSVHCRHRPSPTVTALAAAGGTPLSPRCGPSARAAAPGAPCRQ 724
           PPS++P P +   +PA R+   R  P+P   A AA+      P    S+    P AP  +
Sbjct: 39  PPSSSPAPAASSATPAARAPSQRTPPTPATPAKAAS-----PPATNSSSSPRTPAAPAPR 93

Query: 723 RTGACCGRAAAWGC***CQRSPPGAPLGHGR*CAARRTVPQPASASPSAAAAG*PPSA-A 547
                                PP  P               PA   PS+  A  PPS  A
Sbjct: 94  ---------------------PPQPP-----------PATSPAPTKPSSPPAPKPPSPPA 121

Query: 546 PSRTTRQRSWRPPQSWP*APPPPAPAAPS-AGTPCC--APPPAARPAPWPAPPACIAVPR 376
           PS          P + P +PP P P++P  A TP    +PPP++ PAP P+PP    +P 
Sbjct: 122 PS----------PSTTPSSPPAPKPSSPPPAATPTTKPSPPPSSPPAPRPSPP----LPP 167

Query: 375 RRAPAP**CPTAF*CLSCYPPPSP 304
           R  P P   P A    S  PPP+P
Sbjct: 168 RTPPPP--PPAAAPKPSPSPPPAP 189

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 50/173 (28%), Positives = 69/173 (38%), Gaps = 7/173 (4%)
 Frame = -2

Query: 621 ARRTVPQPASASPSAAAAG*PPSAAPSRTTRQRSWRPPQSWP*APP-------PPAPAAP 463
           ++RT P PA+ + +A+      S++P RT    + RPPQ  P   P       PPAP  P
Sbjct: 59  SQRTPPTPATPAKAASPPATNSSSSP-RTPAAPAPRPPQPPPATSPAPTKPSSPPAPKPP 117

Query: 462 SAGTPCCAPPPAARPAPWPAPPACIAVPRRRAPAP**CPTAF*CLSCYPPPSPAVPAPAG 283
           S   P  +  P++ PAP P+ P   A P  + P+P             PP SP  P P+ 
Sbjct: 118 SPPAPSPSTTPSSPPAPKPSSPPPAATPTTK-PSP-------------PPSSPPAPRPSP 163

Query: 282 LDE*RSPLASCECIPMDIKSAQASAGVCWRM*TLAGKPGPSPAPVDACISQTT 124
               R+P                           A  P PSP+P  A  + TT
Sbjct: 164 PLPPRTPPPPPP----------------------AAAPKPSPSPPPAPTNSTT 194



EST assemble image


clone accession position
1 LC040c08_r AV621735 1 466
2 LC062c03_r AV623334 1 503
3 LC015d08_r AV619948 82 583
4 CM070g05_r AV391272 84 703
5 LC080c06_r AV624617 86 583
6 LC017d12_r AV620091 154 669
7 LC098b03_r AV625808 157 542
8 LC049h04_r AV622446 225 758
9 CM091c11_r AV397579 228 554
10 LC077a10_r AV624386 244 658
11 LC011g09_r AV619690 482 991




Chlamydomonas reinhardtii
Kazusa DNA Research Institute