KCC001611A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001611A_C01 KCC001611A_c01
ccactccgcataccccaccacaaggtcgcggtctgaaccgcaagccactgcgctctgaga
ctcctcgcctacgctgccctCTACCTGATTTCTTATCATCTTTATTTACATGACTTCACA
AGGATGCGAAACCAATGACAAGGGTTCCTGGCCTTCAGGCGTGCAAAGTGTCGGGCGTCG
CTGAGTCCCAAGCGGGCTTGCGCGCGTGTTTTCTATCGTGTTCACAATAGGAAATAGGTC
CTGAACATCTCGCATACAGAGCAGGAGCCGCGATGTTGGCAAGCCTTGCGCCTCAGTGGA
GCGCTGGTTTCGGCTCCGCAGCTCGGGCGTTCGCTAAAACAGCTGCATCCGCGGCAAGAC
AGGGAGCCATCGGCTCTGTCAGGCTTATCGACTCCTTTCACAAAGAGACGGTGGACGACA
TCTTCGCGCATGCGCTTAAGAAGCAGACTGGCGTTAGCCTTAAATACATGCTCGACTTTG
GGCAAAATCCGATTGAGCGGCAGCTGCTGCTGTCGGCACAGTTCCTGCACAAGGAGCTGC
CGGTGCGGCTAGCGCACCGCGTGGCGGAGCTGGAGAACCTGCCGTATGGGCTCAGCGCCA
AGAAGCACATACTGCAGGTGCGGGACTGGTACGTAGAGTCGTTCCGGGACCTGCGCTCCT
TCCCGCACGTCAAGGCACGCTGCGGACGAGCTCAAGTTCACAGAGCTGCTCAGGGGCATC
TACCGCACGCACGCCAACGCGGTGCCAGTCATGGCCAAGGGCGTCAGCGAGCTGCGCGAG
GAACTGCGGTTGCAGCAACGGCTGACGGAGCTGCCTGAGATCCACCAGTTCCTGGACGGA
TTCTATCTCAGTCGCATTGGTATCCGTATCCTCATCGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001611A_C01 KCC001611A_c01
         (878 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_187300.2| pyruvate dehydrogenase (lipoamide) kinase (pdhk...   125  3e-40
pir||T51626 [pyruvate dehydrogenase (lipoamide)] kinase (EC 2.7....   125  3e-40
gb|AAC97601.1| pyruvate dehydrogenase kinase [Arabidopsis thalia...   125  3e-40
gb|AAK01947.1| pyruvate dehydrogenase kinase 1 [Oryza sativa sub...   116  1e-38
gb|AAK16695.1|AF323611_1 pyruvate dehydrogenase kinase [Oryza sa...   114  5e-38

>ref|NP_187300.2| pyruvate dehydrogenase (lipoamide) kinase (pdhk) [Arabidopsis
           thaliana]
          Length = 369

 Score =  125 bits (315), Expect(2) = 3e-40
 Identities = 56/95 (58%), Positives = 73/95 (75%)
 Frame = +3

Query: 390 DSFHKETVDDIFAHALKKQTGVSLKYMLDFGQNPIERQLLLSAQFLHKELPVRLAHRVAE 569
           + F K  ++D+      KQTGVSL+YM++FG  P ER LL+SAQFLHKELP+R+A R  E
Sbjct: 8   EMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIRVARRAIE 67

Query: 570 LENLPYGLSAKKHILQVRDWYVESFRDLRSFPHVK 674
           L+ LPYGLS K  +L+VRDWY+ESFRD+R+FP +K
Sbjct: 68  LQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIK 102

 Score = 62.8 bits (151), Expect(2) = 3e-40
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +1

Query: 673 RHAADELKFTELLRGIYRTHANAVPVMAKGVSELREELRLQQRLTELPEIHQFLDGFYLS 852
           + + DE  FT++++ +   H N VP+MA GV++L++ +        L EIHQFLD FYLS
Sbjct: 102 KDSGDEKDFTQMIKAVKVRHNNVVPMMALGVNQLKKGMNSGN----LDEIHQFLDRFYLS 157

Query: 853 RIGIRILI 876
           RIGIR+LI
Sbjct: 158 RIGIRMLI 165

>pir||T51626 [pyruvate dehydrogenase (lipoamide)] kinase (EC 2.7.1.99)
           [validated] - Arabidopsis thaliana
           gi|3641834|emb|CAA07447.1| pyruvate dehydrogenase kinase
           [Arabidopsis thaliana]
          Length = 366

 Score =  125 bits (315), Expect(2) = 3e-40
 Identities = 56/95 (58%), Positives = 73/95 (75%)
 Frame = +3

Query: 390 DSFHKETVDDIFAHALKKQTGVSLKYMLDFGQNPIERQLLLSAQFLHKELPVRLAHRVAE 569
           + F K  ++D+      KQTGVSL+YM++FG  P ER LL+SAQFLHKELP+R+A R  E
Sbjct: 8   EMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIRVARRAIE 67

Query: 570 LENLPYGLSAKKHILQVRDWYVESFRDLRSFPHVK 674
           L+ LPYGLS K  +L+VRDWY+ESFRD+R+FP +K
Sbjct: 68  LQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIK 102

 Score = 62.8 bits (151), Expect(2) = 3e-40
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +1

Query: 673 RHAADELKFTELLRGIYRTHANAVPVMAKGVSELREELRLQQRLTELPEIHQFLDGFYLS 852
           + + DE  FT++++ +   H N VP+MA GV++L++ +        L EIHQFLD FYLS
Sbjct: 102 KDSGDEKDFTQMIKAVKVRHNNVVPMMALGVNQLKKGMNSGN----LDEIHQFLDRFYLS 157

Query: 853 RIGIRILI 876
           RIGIR+LI
Sbjct: 158 RIGIRMLI 165

>gb|AAC97601.1| pyruvate dehydrogenase kinase [Arabidopsis thaliana]
           gi|14334688|gb|AAK59522.1| putative pyruvate
           dehydrogenase kinase [Arabidopsis thaliana]
           gi|16323390|gb|AAL15189.1| putative pyruvate
           dehydrogenase kinase [Arabidopsis thaliana]
          Length = 366

 Score =  125 bits (315), Expect(2) = 3e-40
 Identities = 56/95 (58%), Positives = 73/95 (75%)
 Frame = +3

Query: 390 DSFHKETVDDIFAHALKKQTGVSLKYMLDFGQNPIERQLLLSAQFLHKELPVRLAHRVAE 569
           + F K  ++D+      KQTGVSL+YM++FG  P ER LL+SAQFLHKELP+R+A R  E
Sbjct: 8   EMFPKSLIEDVHKWGCMKQTGVSLRYMMEFGSKPTERNLLISAQFLHKELPIRVARRAIE 67

Query: 570 LENLPYGLSAKKHILQVRDWYVESFRDLRSFPHVK 674
           L+ LPYGLS K  +L+VRDWY+ESFRD+R+FP +K
Sbjct: 68  LQTLPYGLSDKPAVLKVRDWYLESFRDMRAFPEIK 102

 Score = 62.8 bits (151), Expect(2) = 3e-40
 Identities = 32/68 (47%), Positives = 46/68 (67%)
 Frame = +1

Query: 673 RHAADELKFTELLRGIYRTHANAVPVMAKGVSELREELRLQQRLTELPEIHQFLDGFYLS 852
           + + DE  FT++++ +   H N VP+MA GV++L++ +        L EIHQFLD FYLS
Sbjct: 102 KDSGDEKDFTQMIKAVKVRHNNVVPMMALGVNQLKKGMNSGN----LDEIHQFLDRFYLS 157

Query: 853 RIGIRILI 876
           RIGIR+LI
Sbjct: 158 RIGIRMLI 165

>gb|AAK01947.1| pyruvate dehydrogenase kinase 1 [Oryza sativa subsp. indica]
           gi|23237829|dbj|BAC16404.1| pyruvate dehydrogenase
           kinase 1 [Oryza sativa (japonica cultivar-group)]
          Length = 363

 Score =  116 bits (290), Expect(2) = 1e-38
 Identities = 54/80 (67%), Positives = 66/80 (82%)
 Frame = +3

Query: 441 KQTGVSLKYMLDFGQNPIERQLLLSAQFLHKELPVRLAHRVAELENLPYGLSAKKHILQV 620
           KQTGVSL+YM++FG  P ER LLLSAQFL KELP+R+A R  ELE+LP+GLS K  IL+V
Sbjct: 21  KQTGVSLRYMMEFGSRPTERNLLLSAQFLQKELPIRIARRALELESLPFGLSRKPAILKV 80

Query: 621 RDWYVESFRDLRSFPHVKAR 680
           RDWY++SFRD+R FP V+ R
Sbjct: 81  RDWYLDSFRDIRYFPEVRNR 100

 Score = 66.6 bits (161), Expect(2) = 1e-38
 Identities = 35/69 (50%), Positives = 48/69 (68%), Gaps = 1/69 (1%)
 Frame = +1

Query: 673 RHAADELKFTELLRGIYRTHANAVPVMAKGVSELR-EELRLQQRLTELPEIHQFLDGFYL 849
           R+  DEL FT++++ I   H N VP MA GV +L+ E+ R ++  T   EIH+FLD FY+
Sbjct: 98  RNRNDELAFTQMIKMIKVRHNNVVPTMALGVQQLKNEQYRTRKIPTAFDEIHEFLDRFYM 157

Query: 850 SRIGIRILI 876
           SRIGIR+LI
Sbjct: 158 SRIGIRMLI 166

>gb|AAK16695.1|AF323611_1 pyruvate dehydrogenase kinase [Oryza sativa]
          Length = 343

 Score =  114 bits (285), Expect(2) = 5e-38
 Identities = 53/79 (67%), Positives = 65/79 (82%)
 Frame = +3

Query: 444 QTGVSLKYMLDFGQNPIERQLLLSAQFLHKELPVRLAHRVAELENLPYGLSAKKHILQVR 623
           QTGVSL+YM++FG  P ER LLLSAQFL KELP+R+A R  ELE+LP+GLS K  IL+VR
Sbjct: 1   QTGVSLRYMMEFGSRPTERNLLLSAQFLQKELPIRIARRALELESLPFGLSRKPAILKVR 60

Query: 624 DWYVESFRDLRSFPHVKAR 680
           DWY++SFRD+R FP V+ R
Sbjct: 61  DWYLDSFRDIRYFPEVRNR 79

 Score = 66.6 bits (161), Expect(2) = 5e-38
 Identities = 35/69 (50%), Positives = 48/69 (68%), Gaps = 1/69 (1%)
 Frame = +1

Query: 673 RHAADELKFTELLRGIYRTHANAVPVMAKGVSELR-EELRLQQRLTELPEIHQFLDGFYL 849
           R+  DEL FT++++ I   H N VP MA GV +L+ E+ R ++  T   EIH+FLD FY+
Sbjct: 77  RNRNDELAFTQMIKMIKVRHNNVVPTMALGVQQLKNEQYRTRKIPTAFDEIHEFLDRFYM 136

Query: 850 SRIGIRILI 876
           SRIGIR+LI
Sbjct: 137 SRIGIRMLI 145



EST assemble image


clone accession position
1 LC059a04_r AV623105 1 521
2 HC036b10_r AV634662 214 790
3 CM069g05_r AV391188 427 878




Chlamydomonas reinhardtii
Kazusa DNA Research Institute