KCC001610A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001610A_C01 KCC001610A_c01
ctattTCGAGGTGCAAAATAGGCGCTGTCCCGGGCTCCCCACGACCATCAGTATCACTCA
AGAACACCTCTTTAAGGGCTTCAAAACGCGCGATGGCGCATCGTTAACATATCATACACA
CATCACGCACAGACGCACCAATTATGGCTCTCGCATTCGCAGCGATGCGGTGCGCGACTG
GTGCGACCGCGTCGCTGCTGCCCGCCGCGCGGAGCTGGGCCGTTAGCATGCTTACTTCTG
GAACTAGATCATGGCCTTGGAGTGTCTGTACTGGGAGGAGGACCGCTTCCAGGCTTGCTA
GCTCGGGCACGGCACGACAGCGCGTTGGCGCAGCGGGCGTCGGAGCAGGTGGTGCCTCCG
GAGATTCTGAGGGAGCTCCAGCAACTAGAGGGCTCGCTGAATGACGCGGCACGCCTGGAC
GGCCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001610A_C01 KCC001610A_c01
         (427 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00006374.1| COG0804: Urea amidohydrolase (urease) alpha s...    44  7e-04
pir||A45294 Balbiani ring 2.1 - midge (Chironomus tentans) (frag...    41  0.003
ref|NP_722520.1| friend of GATA-1 [Homo sapiens] gi|24078517|gb|...    41  0.003
dbj|BAA99422.1| P0710E05.7 [Oryza sativa (japonica cultivar-group)]    40  0.010
dbj|BAC80108.1| putative SET-domain transcriptional regulator [O...    39  0.013

>ref|ZP_00006374.1| COG0804: Urea amidohydrolase (urease) alpha subunit [Rhodobacter
           sphaeroides]
          Length = 708

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 34/90 (37%), Positives = 42/90 (45%), Gaps = 8/90 (8%)
 Frame = -3

Query: 407 ASFSEPSSCWSSLRISGGTTCSDARCA--NALSCRA------RASKPGSGPPPSTDTPRP 252
           ASFS P+S W + R+    +C+D   A  NA S  A      R  + GS PP S      
Sbjct: 548 ASFS-PASRWRNCRLRNAISCTDVADARLNARSAAASGAVALRLPRAGSAPPASR----- 601

Query: 251 *SSSRSKHANGPAPRGGQQRRGRTSRAPHR 162
            S S S    GP P GG+ R G T+  P R
Sbjct: 602 -SRSSSGGLRGPFPAGGRHRTGGTAARPLR 630

>pir||A45294 Balbiani ring 2.1 - midge (Chironomus tentans) (fragment)
           gi|156606|gb|AAA28264.1| SpId
          Length = 749

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 30/99 (30%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
 Frame = -3

Query: 425 RPSRRAASFSEPSSCWSSLRISGGTTCSDAR---CANALSCRARASKPGSGPPP-STDTP 258
           RP +R+ S S P  C S +R      C+D +    A+   C +R SK GS P   S    
Sbjct: 355 RPEKRSKSGSRPEKCGSKMRRVLAEKCADRKGRFSASKCRCFSRPSKSGSRPEKRSKSGS 414

Query: 257 RP*SSSRS------KHANGPAPRGGQQRRGRTSRAPHRC 159
           RP   S+S      +  +GP P    ++R ++   P +C
Sbjct: 415 RPEKRSKSGSRPEKRSESGPRP----EKRSKSGSRPEKC 449

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 34/111 (30%), Positives = 44/111 (39%), Gaps = 12/111 (10%)
 Frame = -3

Query: 425 RPSRRAASFSEPSSCWSSLRISGGTTCSDAR---CANALSCRARASKPGSGPPP-STDTP 258
           RP +R+ S S P  C S +R      C+D +    A+   C +R SK GS P   S    
Sbjct: 435 RPEKRSKSGSRPEKCGSKMRRVLAEKCADRKGRFSASKCRCFSRPSKSGSRPEKRSKSGS 494

Query: 257 RP*SSS--------RSKHANGPAPRGGQQRRGRTSRAPHRCECESHNWCVC 129
           RP   S        RSK  + P   G   RR    +   R    S + C C
Sbjct: 495 RPEKRSKSGSRPEKRSKSGSRPEECGSAMRRALAEKCADRKGRFSASKCRC 545

 Score = 34.3 bits (77), Expect = 0.41
 Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
 Frame = -3

Query: 425 RPSRRAASFSEPSSCWSSLRISGGTTCSDAR---CANALSCRARASKPGSGPPP-STDTP 258
           RP +R+ S S    C S +R      C+D +    A+   C +R SK GS P   S    
Sbjct: 575 RPEKRSKSGSRSEKCGSKMRRVLAEKCADRKGRFSASKCRCFSRPSKSGSRPEKRSKSGS 634

Query: 257 RP*SSSRSKHANGPAPRGGQ----QRRGRTSRAPHR 162
           RP    RSK  + P  R       ++R ++   P +
Sbjct: 635 RP--EKRSKSGSRPEKRSKSGSRPEKRSKSGSRPEK 668

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 25/77 (32%), Positives = 35/77 (44%), Gaps = 4/77 (5%)
 Frame = -3

Query: 425 RPSRRAASFSEPSSCWSSLRISGGTTCSDARCA-NALSCRARASKPGSGPPP---STDTP 258
           RP +R+ S S P  C S++R +    C+D +   +A  CR  +    SG  P   S    
Sbjct: 505 RPEKRSKSGSRPEECGSAMRRALAEKCADRKGRFSASKCRCFSRPSWSGIKPEKRSRSGS 564

Query: 257 RP*SSSRSKHANGPAPR 207
           RP    RSK  + P  R
Sbjct: 565 RP--EKRSKSGSRPEKR 579

>ref|NP_722520.1| friend of GATA-1 [Homo sapiens]
           gi|24078517|gb|AAN45858.1|AF488691_1 friend of GATA-1
           [Homo sapiens]
          Length = 1004

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 25/59 (42%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -1

Query: 406 RHSASPLVAGAPS--ESPEAPPAPTPAAPTRCRAVPELASLEAVLLPVQTLQGHDLVPE 236
           RH   P    AP     P APPAP+PAAP R R   +L  L A   P     GH   PE
Sbjct: 707 RHDPPPRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPE 765

>dbj|BAA99422.1| P0710E05.7 [Oryza sativa (japonica cultivar-group)]
          Length = 260

 Score = 39.7 bits (91), Expect = 0.010
 Identities = 26/70 (37%), Positives = 31/70 (44%), Gaps = 15/70 (21%)
 Frame = -3

Query: 329 ANALSCRARASKPGSGPPPSTDTPRP*SSSRSKHANGPAPRGG---------------QQ 195
           A A + R +A+ PGS P     +PR    SR+  AN PA RGG               QQ
Sbjct: 35  ATAAATREQAASPGSQPTTPAPSPRRPRRSRAVSANWPAGRGGRGGWAAGDGRRATQRQQ 94

Query: 194 RRGRTSRAPH 165
           R G    APH
Sbjct: 95  RHGSRRAAPH 104

>dbj|BAC80108.1| putative SET-domain transcriptional regulator [Oryza sativa
           (japonica cultivar-group)]
          Length = 684

 Score = 39.3 bits (90), Expect = 0.013
 Identities = 29/93 (31%), Positives = 39/93 (41%), Gaps = 11/93 (11%)
 Frame = -1

Query: 418 PGVPRHSASPLVAGAPSESPEAPPAPTP------AAPTRCRAVPELASLEAVLLPVQTLQ 257
           P  P     PL A AP   P  PP P P         T   A P+L S  AV+ P+Q+L 
Sbjct: 38  PASPERGPLPLPAAAPPPPPPPPPPPPPPQVQAATVATPVPATPDL-SAAAVMTPLQSLP 96

Query: 256 GHD-----LVPEVSMLTAQLRAAGSSDAVAPVA 173
            +      L     + T  L +AG++  + P A
Sbjct: 97  PNPEEETLLAEYYRLATLYLSSAGAAGVIVPAA 129



EST assemble image


clone accession position
1 CM069f04_r AV391194 1 538
2 LCL082f02_r AV630680 6 345




Chlamydomonas reinhardtii
Kazusa DNA Research Institute