KCC001608A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001608A_C01 KCC001608A_c01
gcacgagagttttttttttttttttttttGGGGGTTTTACTTTACACAAGACGCAGGACA
CGTGGGGCTTCATCAATCGAAGACACCATGCCCATGCACCAGCAGGATCCAATCAGGGCT
GACGCCCCTGCCGTTTCTGATTCGCATGGCGCAATAAATACAAGGCACGCGCATGCGAAC
TCCGACAATTGTACATATCACACAACGCGTGAAATCCAACAGGGTCAAAACGTGGCAAAC
AGGAACCGCAGCCTGCCTATGTCTGGAATGCAAGCGGCCAATTACGTCCGCATGCAATCC
GGCCTGGCTGCGGCGCCCTTCCCGGTGAACGTCAAAGTTGCACGTGCGGGCATCAGCGTG
CCGCGCCGCGTGCACAGGGCCCCACGCACAACCGCACGGCCAACACTGGCATGGTGAGGG
AGCACGCGGGGCCCCAACAACGATAAACATGATTTGCGGAGCAGTTTCCAGTTCTTATCA
AGCTGCAAnggcagtgccccgccgncacctaacactgtacccgccgc


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001608A_C01 KCC001608A_c01
         (527 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF13358.1|AF154334_1 unknown [Eufolliculina uhligi]                36  0.35
ref|XP_087056.4| similar to KIAA1841 protein [Homo sapiens]            34  1.3
gb|AAK53855.1|AC016781_9 Hypothetical protein [Oryza sativa] gi|...    33  1.7
ref|NP_294847.1| UDP-N-acetylglucosamine 1-carboxyvinyltransfera...    33  2.3
ref|ZP_00056155.1| hypothetical protein [Magnetospirillum magnet...    33  2.3

>gb|AAF13358.1|AF154334_1 unknown [Eufolliculina uhligi]
          Length = 764

 Score = 35.8 bits (81), Expect = 0.35
 Identities = 21/60 (35%), Positives = 28/60 (46%)
 Frame = +1

Query: 85  TMPMHQQDPIRADAPAVSDSHGAINTRHAHANSDNCTYHTTREIQQGQNVANRNRSLPMS 264
           T  +HQQ+P+RA APAV      INT  +   S   T  T + +     +   NR  P S
Sbjct: 670 TQGLHQQNPLRACAPAVPVQRAIINTMKSPNRSPFMTPRTMKLMASNSPMFPSNRQAPTS 729

>ref|XP_087056.4| similar to KIAA1841 protein [Homo sapiens]
          Length = 718

 Score = 33.9 bits (76), Expect = 1.3
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 70  SSIEDTMPMHQQDPIRADAPAVSDSHGAINTRHAHANSDNCTYHTTREIQQ 222
           SS+ D     Q+ P+  DA + +  H   +TR+  + S+NCT H   E+ +
Sbjct: 90  SSLLDIHGEFQETPVGHDAVSKTGRHSIASTRNCSSESENCTTHNGGEMTE 140

>gb|AAK53855.1|AC016781_9 Hypothetical protein [Oryza sativa]
           gi|14702011|gb|AAK72261.1|AC084767_1 hypothetical
           protein [Oryza sativa (japonica cultivar-group)]
          Length = 272

 Score = 33.5 bits (75), Expect = 1.7
 Identities = 21/54 (38%), Positives = 27/54 (49%), Gaps = 2/54 (3%)
 Frame = +3

Query: 261 VWNASGQLRPHAIRPGCGALPG--ERQSCTCGHQRAAPRAQGPTHNRTANTGMV 416
           VW    ++ PH  R G G +    ERQ  TCG+ RA  RA  P    + + GMV
Sbjct: 148 VWAQERRIHPHTWRRGGGRVVWHQERQPRTCGYVRAKSRADNPP---STSLGMV 198

>ref|NP_294847.1| UDP-N-acetylglucosamine 1-carboxyvinyltransferase [Deinococcus
           radiodurans] gi|22653849|sp|Q9RVA6|MURA_DEIRA
           UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           (Enoylpyruvate transferase) (UDP-N-acetylglucosamine
           enolpyruvyl transferase) (EPT) gi|7474064|pir||B75434
           UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
           Deinococcus radiodurans (strain R1)
           gi|6458859|gb|AAF10696.1|AE001962_4
           UDP-N-acetylglucosamine 1-carboxyvinyltransferase
           [Deinococcus radiodurans]
          Length = 426

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 12/56 (21%)
 Frame = -3

Query: 447 FIVVGA--PRAPSPCQCWPCGCAWGPVHAARHADARTC----------NFDVHREG 316
           FIV+GA   RA +     P GCAWGP    +H  A             NF  HREG
Sbjct: 98  FIVLGAILARAGTATVSMPGGCAWGPRPVDQHVKALRALGAEVIEDGGNFFAHREG 153

>ref|ZP_00056155.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 341

 Score = 33.1 bits (74), Expect = 2.3
 Identities = 23/67 (34%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
 Frame = -3

Query: 429 PRAPS----PCQCWPCGCAWGPVHAARHADARTCNFDVHREGRRSQAGLHADVIGRLHSR 262
           PR PS      + W CGC+    H   H   R       R  RRS+ G H  + G +H R
Sbjct: 9   PRRPSCRSTSARVWRCGCSRATEHDRLHRRPR-------RPVRRSEHGGHRQLPGPVHPR 61

Query: 261 HRQAAVP 241
              AA P
Sbjct: 62  PGTAARP 68



EST assemble image


clone accession position
1 CM087h11_r AV392441 1 527
2 CM069d12_r AV391239 29 559




Chlamydomonas reinhardtii
Kazusa DNA Research Institute