Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001602A_C01 KCC001602A_c01
(464 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564685.1| arginine/serine-rich protein [Arabidopsis thali... 106 1e-22
gb|AAK93651.1| unknown protein [Arabidopsis thaliana] 106 1e-22
pir||T50647 serine/arginine-rich protein [imported] - Arabidopsi... 106 1e-22
ref|NP_187966.1| arginine/serine-rich splicing factor SCL30a [Ar... 105 3e-22
emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabid... 105 3e-22
>ref|NP_564685.1| arginine/serine-rich protein [Arabidopsis thaliana]
gi|25405814|pir||B96595 unknown protein, 47745-45927
[imported] - Arabidopsis thaliana
gi|12323160|gb|AAG51556.1|AC027034_2 unknown protein;
47745-45927 [Arabidopsis thaliana]
Length = 220
Score = 106 bits (265), Expect = 1e-22
Identities = 57/110 (51%), Positives = 73/110 (65%), Gaps = 5/110 (4%)
Frame = +2
Query: 149 GRSRSRS--RSYSPRGRSFAQKPR---RERDPSTSLLFRNLSKTTTTEDLRHYAERYGPI 313
GRS + S R Y RGRS + + R R RD TSLL RNL EDLR E++GP+
Sbjct: 3 GRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPV 62
Query: 314 RDIYLPKDFQTGEPRGLGFVEFSDPKDAEEARHCMDGSTVAGRVISVTFA 463
+DIYLP+D+ TG+PRG GFV+F DP DA +A+H MDG + GR ++V FA
Sbjct: 63 KDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>gb|AAK93651.1| unknown protein [Arabidopsis thaliana]
Length = 263
Score = 106 bits (265), Expect = 1e-22
Identities = 57/110 (51%), Positives = 73/110 (65%), Gaps = 5/110 (4%)
Frame = +2
Query: 149 GRSRSRS--RSYSPRGRSFAQKPR---RERDPSTSLLFRNLSKTTTTEDLRHYAERYGPI 313
GRS + S R Y RGRS + + R R RD TSLL RNL EDLR E++GP+
Sbjct: 3 GRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPV 62
Query: 314 RDIYLPKDFQTGEPRGLGFVEFSDPKDAEEARHCMDGSTVAGRVISVTFA 463
+DIYLP+D+ TG+PRG GFV+F DP DA +A+H MDG + GR ++V FA
Sbjct: 63 KDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>pir||T50647 serine/arginine-rich protein [imported] - Arabidopsis thaliana
gi|6572475|gb|AAF17288.1|AF099940_1 Serine/arginine-rich
protein [Arabidopsis thaliana]
gi|9843659|emb|CAC03603.1| SC35-like splicing factor
SCL33, 33 kD [Arabidopsis thaliana]
Length = 287
Score = 106 bits (265), Expect = 1e-22
Identities = 57/110 (51%), Positives = 73/110 (65%), Gaps = 5/110 (4%)
Frame = +2
Query: 149 GRSRSRS--RSYSPRGRSFAQKPR---RERDPSTSLLFRNLSKTTTTEDLRHYAERYGPI 313
GRS + S R Y RGRS + + R R RD TSLL RNL EDLR E++GP+
Sbjct: 3 GRSYTPSPPRGYGRRGRSPSPRGRYGGRSRDLPTSLLVRNLRHDCRQEDLRKSFEQFGPV 62
Query: 314 RDIYLPKDFQTGEPRGLGFVEFSDPKDAEEARHCMDGSTVAGRVISVTFA 463
+DIYLP+D+ TG+PRG GFV+F DP DA +A+H MDG + GR ++V FA
Sbjct: 63 KDIYLPRDYYTGDPRGFGFVQFMDPADAADAKHHMDGYLLLGRELTVVFA 112
>ref|NP_187966.1| arginine/serine-rich splicing factor SCL30a [Arabidopsis thaliana]
gi|11994559|dbj|BAB02599.1| contains similarity to
Serine/arginine-rich protein~gene_id:K20M4.1
[Arabidopsis thaliana]
gi|13878011|gb|AAK44083.1|AF370268_1 putative
serine/arginine-rich protein [Arabidopsis thaliana]
gi|17104623|gb|AAL34200.1| putative serine/arginine-rich
protein [Arabidopsis thaliana]
Length = 262
Score = 105 bits (262), Expect = 3e-22
Identities = 53/100 (53%), Positives = 67/100 (67%)
Frame = +2
Query: 164 RSRSYSPRGRSFAQKPRRERDPSTSLLFRNLSKTTTTEDLRHYAERYGPIRDIYLPKDFQ 343
R RS SPRGR R+ D TSLL RNL EDLR E++GP++DIYLP+D+
Sbjct: 17 RGRSPSPRGRFGGS---RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYY 73
Query: 344 TGEPRGLGFVEFSDPKDAEEARHCMDGSTVAGRVISVTFA 463
TG+PRG GF++F DP DA EA+H MDG + GR ++V FA
Sbjct: 74 TGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
>emb|CAC03604.1| SC35-like splicing factor SCL30a, 30a kD [Arabidopsis thaliana]
Length = 261
Score = 105 bits (262), Expect = 3e-22
Identities = 53/100 (53%), Positives = 67/100 (67%)
Frame = +2
Query: 164 RSRSYSPRGRSFAQKPRRERDPSTSLLFRNLSKTTTTEDLRHYAERYGPIRDIYLPKDFQ 343
R RS SPRGR R+ D TSLL RNL EDLR E++GP++DIYLP+D+
Sbjct: 17 RGRSPSPRGRFGGS---RDSDLPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYY 73
Query: 344 TGEPRGLGFVEFSDPKDAEEARHCMDGSTVAGRVISVTFA 463
TG+PRG GF++F DP DA EA+H MDG + GR ++V FA
Sbjct: 74 TGDPRGFGFIQFMDPADAAEAKHQMDGYLLLGRELTVVFA 113
