KCC001599A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001599A_C01 KCC001599A_c01
ctggtcCCAACGTCCTGGTTGATGACCTCAACTACTTCGGTGATGCCTACAACTGCGCCG
TCGGCAAGGACGTCATTAGCGAGCTGTTCGCTCCCTACATGGAAGATGGCACCATCATCG
CCGGCACCGACTCCATCACCTGCAACGGCAACAAGATCACGGCCTGCGCCACTATGTATT
CAAAGGAGCGGGGCGCTAAGATGGCAAACGAGCTGGAGTCTATGGGCAATGGCCTCGTTA
CTTCCGTGTTCGGCTTCACTGGCGACTGCCCTCTGGCCCTGGCTGGCTACTCGACCGGCG
TCACCTCGACCGATCAGGACTGTGGCATCTTCAAGGCTGGGCCCGCCTGGCGCCCCGCCC
ACCACGCCCTTCCCCTTCTGCGTGTGCAATAAGCAGCAGGGCTCGACCCCCTTCTACCTG
GATAATGCCGTCGAGGTGGATGACGTCAACAACGAGTATTGCCTAAGCGTGTACACCGCC
GCGGCTGGCCCCGGCAAGTGCGCCTCCGCCACCATCATGAAAAAGGCCGAGTTCTACTTC
GACTACAATATGCGTTGGAAGCTGACTGGCATCACCATTCGCTACAACAACGGCAGGACC
GCCACCCGCTCTCAGTCGTGGGGCCCCGTGGGTGACAACACGCTGAAAGTCTCTGACCTG
AACTGGAAGACCGGCGACGTTGCGTCGCTCAAGCCCAAGATTTGCTTCAAGTTCAAGTCG
GGCACCACGCTTGCGGATTTCTCAATGGACCCCGATGGCTACGTGTGGGGCTCTCTGTTC
AACCCTGACCAGAGCTGCTGCCCCACCTTCCCGGCAGAGTAACGGCAGCCGGGCCCCATG
GACGGTCTTCCTACCCCGTGACTAAGCGTTGTGCTTGCTTGTCTTGACGTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001599A_C01 KCC001599A_c01
         (892 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAD22154.1| pherophorin-dz1 protein [Volvox carteri f. nagar...    89  1e-16
sp|P81131|PER1_VOLCA PERPHORIN I PRECURSOR gi|282738|pir||S28267...    69  4e-13
sp|P81132|PER2_VOLCA PERPHORIN II gi|486935|pir||S36339 pheropho...    76  9e-13
dbj|BAC57890.1| pherophorin [Volvox carteri f. nagariensis]            74  4e-12
ref|NP_002448.1| mucin 2 [Homo sapiens] gi|2506877|sp|Q02817|MUC...    50  3e-11

>emb|CAD22154.1| pherophorin-dz1 protein [Volvox carteri f. nagariensis]
          Length = 1009

 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 50/158 (31%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
 Frame = +1

Query: 358  PTTPFPFCVCNKQQGSTPFYLDNAVEVDD---VNNEYCLSVYTAAAG---PGKCASAT-I 516
            P TPFP C CN  QG  PF +       +      EYC +V T       P  C SA   
Sbjct: 849  PFTPFPNCTCNTTQGILPFTVSPRFTTGNRTATTTEYCFTVNTIPPSQIMPNTCGSANDT 908

Query: 517  MKKAEFYFDYNMRWKLTGITIRYNNGRTATRSQSWGPVGDNTLKVSDLNWKTGDVASLKP 696
            + K E+Y + NM   + GI +   +G    RS SWG  G N+LK + +NW     +    
Sbjct: 909  LTKIEWYANQNMSSWVAGINLYPASGPFVKRSSSWGAAGTNSLKATPINWSIAQASG--A 966

Query: 697  KICFKFKSGTTLADFSMDPDGYVWGSLFNPDQSCCPTF 810
            ++C + K+  T++D  +      + S FN ++ CCP +
Sbjct: 967  RVCVEVKNPKTMSDLCLGIASQCFLSTFNSNKDCCPIY 1004

>sp|P81131|PER1_VOLCA PERPHORIN I PRECURSOR gi|282738|pir||S28267 pherophorin I precursor
           - Volvox carteri gi|6006625|emb|CAB56808.1| Pherophorin
           I [Volvox carteri]
          Length = 512

 Score = 68.9 bits (167), Expect(2) = 4e-13
 Identities = 50/167 (29%), Positives = 70/167 (40%), Gaps = 13/167 (7%)
 Frame = +1

Query: 355 PPTTPFPFCVCNKQQGSTPFYLDNAV--EVDDVNNE-----YCLSVYTAAA--GPGKCAS 507
           P    FP C C  +  +T F     +  E    +N      YC ++   A     G C +
Sbjct: 344 PGNPDFPKCECETKPAATRFAALPTLTQEPGRPSNRTNSTLYCFTLQVVAPLNPNGLCGN 403

Query: 508 ATIMKKAEFYFDY--NMRWKLTGITIRYNNGRTATR--SQSWGPVGDNTLKVSDLNWKTG 675
            T + KAE + +     R K+  +  +     +  R  S SWG  G+ TLKVS LNW   
Sbjct: 404 TTTLLKAELWGNDIPTQRRKILALAFKAAGASSPLRYLSPSWGSAGEQTLKVSGLNWDAS 463

Query: 676 DVASLKPKICFKFKSGTTLADFSMDPDGYVWGSLFNPDQSCCPTFPA 816
                K  IC +  + T L  F        W +LF+PD+ CCP F A
Sbjct: 464 QADGAK--ICMELSNDTNLKTFCNTGQDTCWINLFSPDKQCCPLFAA 508

 Score = 37.7 bits (86), Expect = 0.26
 Identities = 44/179 (24%), Positives = 66/179 (36%), Gaps = 16/179 (8%)
 Frame = +1

Query: 370 FPFCVCNKQQGSTPFYLDNAVEVDDVNNEYCLSVYTAAAGP---GKCASATIMKKAEFYF 540
           FP+C C K    +P+ L+  V+  +   +YC ++      P   G CA+   +KK E   
Sbjct: 28  FPYCQCIKSP--SPYSLEPVVK-SNRTGQYCFTLRVTKPSPSATGYCATKADIKKIEI-- 82

Query: 541 DYNMRWKLTGITIRYNNGRTATR---SQSWGPVGDNTLKVSDLNWKTGDVASLKPKICF- 708
           + N    + G  +        T+   +    P G NT ++         + S    +C  
Sbjct: 83  NVNQVCDVFGNVVNATLNGVPTKVGPAFDTPPDGPNTSRILRFTQLNLGLDSDGAMLCIT 142

Query: 709 -----KFKSGTTLADFSMDPDGYVWGS----LFNPDQSCCPTFPAE*RQPGPMDGLPTP 858
                K K  TTL D    P G   G+    LF+    CCP        P P    P P
Sbjct: 143 LGQNDKGKGCTTLEDLCAPPAGAPKGTCSLALFDSKPDCCPISRVSPPAPPPPPPPPPP 201

 Score = 28.1 bits (61), Expect(2) = 4e-13
 Identities = 19/60 (31%), Positives = 27/60 (44%), Gaps = 2/60 (3%)
 Frame = +3

Query: 132 SITCNGNKITACATMYSKERGAKMANELESMGNGLV--TSVFGFTGDCPLALAGYSTGVT 305
           +ITC+GN I  CA+ +S   GA        + N L    S+   +  CP   A +   VT
Sbjct: 263 TITCSGNVIKVCAS-FSLPPGAPYTGLQADISNALTFWLSLLAPSTGCPAYFANHQVTVT 321

>sp|P81132|PER2_VOLCA PERPHORIN II gi|486935|pir||S36339 pherophorin II - Volvox carteri
           (fragment) gi|6006628|emb|CAB56809.1| Pherophorin II
           [Volvox carteri]
          Length = 484

 Score = 75.9 bits (185), Expect = 9e-13
 Identities = 52/164 (31%), Positives = 71/164 (42%), Gaps = 13/164 (7%)
 Frame = +1

Query: 358 PTTPFPFCVCNKQQGSTPFYLDNAVEVDDVN-------NEYCLSVYTAAAG---PGKCAS 507
           P  PFP C CN  QG  PF +         N        EYC +V T       P  C +
Sbjct: 320 PGVPFPNCTCNTTQGVMPFTVSPTWYAQPANVRWGRNVTEYCFTVNTLQPSQVVPSTCYN 379

Query: 508 AT-IMKKAEFYFDYNMRWKLTGITIRYNNGRTATRSQSWGPVGDNTLKVSDLNWKTGDVA 684
           A   + K E+Y     R  + G T+    G   T + SWG  G +TLKV +LNW    + 
Sbjct: 380 ANDALAKIEWYASDAFRSAVKGFTVYPAGGSNKTIADSWGATGTDTLKV-NLNWNL--LQ 436

Query: 685 SLKPKICFKFKSGTTLADFSMDPDGYVWGSLFNPDQS--CCPTF 810
           +   K+C   ++  T+ D      G  + S+FN D S  CCP +
Sbjct: 437 ANGGKVCVAIQNPFTMGDICKGALGQCYASIFNRDNSDYCCPIY 480

 Score = 36.6 bits (83), Expect = 0.58
 Identities = 49/183 (26%), Positives = 68/183 (36%), Gaps = 14/183 (7%)
 Frame = +1

Query: 346 PGAPPTTPFPFCVCNKQQGSTPFYLDNAVEVDDVNNEYCLSVYT---AAAGPGKCASATI 516
           PG+ P   FPF  CN   G+   Y    V     +N YC  +     A +  G C SA +
Sbjct: 4   PGSIPN--FPFRDCNTTNGA---YRLAPVWRPSGSNTYCFKIQVSQDALSCTGACCSADL 58

Query: 517 MKKAEFYFDYNMRWKLTGITIRYNNGRT---ATRSQS-WGPVGDNTLKVSDLNWKTGDVA 684
             K EF    +       +    N  RT   AT  ++  GPVG   L+++ L   T    
Sbjct: 59  -HKIEFNVCSSCLVAGASVDATVNGVRTRVGATLDKAPAGPVGSAVLRLTQLGLDTTTAQ 117

Query: 685 SLKPKICFKFKSG----TTLADFSMDPD---GYVWGSLFNPDQSCCPTFPAE*RQPGPMD 843
             +  +  K   G    TTL      P    G    ++F+    CCP   A    P P  
Sbjct: 118 DAEVCLTLKTNRGGQGCTTLDQLCSSPGFPAGTCTAAMFDVACDCCPVSQAGQALPPPPP 177

Query: 844 GLP 852
            +P
Sbjct: 178 VIP 180

>dbj|BAC57890.1| pherophorin [Volvox carteri f. nagariensis]
          Length = 606

 Score = 73.6 bits (179), Expect = 4e-12
 Identities = 55/171 (32%), Positives = 73/171 (42%), Gaps = 15/171 (8%)
 Frame = +1

Query: 343 PPGAPPTTPFPFCVCNKQQGSTPFYLDNAVEVDDVN----NEYCLSVYTAAAG---PGKC 501
           PP   P  PFP C CN  Q   P+ L       + +    +EYC ++         P  C
Sbjct: 434 PPPPLPPLPFPNCTCNTTQNIMPYKLSPTWYTTNSSRSYASEYCFTLSVLPPELVVPSTC 493

Query: 502 ASAT-IMKKAEFYFDYNMRWKLTGITIRYNNGRTATRSQSWGPVGDNTLKVSDLNWKTGD 678
            S    + K E+Y D  MR  + G T+    G + T S SWG  G  TLKV +LNW    
Sbjct: 494 MSKNDTLAKLEWYIDERMRPAVKGFTLYPAVGPSRTVSPSWGATGVQTLKV-NLNWNA-- 550

Query: 679 VASLKPKICFKFKSGTTLADFSMDPDGYV-----WGSLFNPDQS--CCPTF 810
             +   K+C        L D  + P G       + S+FN D S  CCPT+
Sbjct: 551 TMANGGKVCIAVAKPYRLEDLCLGPRGTASIGKCYASIFNRDSSDYCCPTY 601

>ref|NP_002448.1| mucin 2 [Homo sapiens] gi|2506877|sp|Q02817|MUC2_HUMAN Mucin 2
            precursor (Intestinal mucin 2) gi|454154|gb|AAB95295.1|
            mucin [Homo sapiens]
          Length = 5179

 Score = 50.1 bits (118), Expect = 5e-05
 Identities = 49/175 (28%), Positives = 68/175 (38%), Gaps = 7/175 (4%)
 Frame = +2

Query: 353  PRPPRPSPSACAISSRARPPSTWIMPSRWMTSTTSIA*ACTPPRLAPASAP------PPP 514
            P PP  +P     S+   PP+T   P    T+T       +PP     S P      PPP
Sbjct: 1618 PSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPP 1677

Query: 515  S*KRPSSTSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGRPATLRRSS 694
            +   PSS  TT        SP  TT   P P  +  +P  TT   S T T  P     ++
Sbjct: 1678 T-TTPSSPITT------TPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTT 1730

Query: 695  PRFASSSSRAPRLRISQWTPMATCGALCST-LTRAAAPPSRQSNGSRAPWTVFLP 856
            P   ++ S  P   ++   P  T   L +T L  +  PP+     +  P T  +P
Sbjct: 1731 PSPTTTPS-PPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSPFSTTTPTTPCVP 1784

 Score = 48.1 bits (113), Expect(2) = 3e-11
 Identities = 51/181 (28%), Positives = 73/181 (40%), Gaps = 15/181 (8%)
 Frame = +2

Query: 359  PPRPSPSACAISSRARPPSTWIMPSRWMT-STTSIA*ACTPPRLAPA------SAPPPPS 517
            PP  +PS    ++   PP+T   P    T S  +I     PP   P+      + PPP +
Sbjct: 1557 PPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTT 1616

Query: 518  *KRPSS-------TSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGR-P 673
               P +       TSTT    +   SP  TTT  PPP  +   P  TT    +T T   P
Sbjct: 1617 TPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPP 1676

Query: 674  ATLRRSSPRFASSSSRAPRLRISQWTPMATCGALCSTLTRAAAPPSRQSNGSRAPWTVFL 853
             T   SSP   +++   P   ++  +P  T  +  +T T     PS  +  S  P T+  
Sbjct: 1677 PTTTPSSP--ITTTPSPPTTTMTTPSPTTTPSSPITTTT----TPSSTTTPSPPPTTMTT 1730

Query: 854  P 856
            P
Sbjct: 1731 P 1731

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 43/157 (27%), Positives = 60/157 (37%), Gaps = 6/157 (3%)
 Frame = +2

Query: 353  PRPPRPSPSACAISSRARPPSTWIMPSRWMTSTTSIA*ACTPPRLAPASAP------PPP 514
            P PP  +P     S+   PP+T   P    T+T       +PP   P + P      PP 
Sbjct: 1500 PSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPT 1559

Query: 515  S*KRPSSTSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGRPATLRRSS 694
            +   P  T+TT        +P  TTT  PP   +   P +TT     T T  P T   ++
Sbjct: 1560 TTPSPPPTTTT--------TPPPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTT 1611

Query: 695  PRFASSSSRAPRLRISQWTPMATCGALCSTLTRAAAP 805
            P   ++ S      I   TP  +   L  T T +  P
Sbjct: 1612 PPPTTTPSPPTTTPI---TPPTSTTTLPPTTTPSPPP 1645

 Score = 44.3 bits (103), Expect(2) = 1e-07
 Identities = 41/155 (26%), Positives = 61/155 (38%), Gaps = 14/155 (9%)
 Frame = +2

Query: 359  PPRPSPSACAISSRARPPSTWIMPSRWMTSTTSIA*ACTPPRLAPASAPPPPS*KRPSST 538
            PP  +PS    ++   PP+T   P    T +  I    TPP     S+P   +   P++T
Sbjct: 1636 PPTTTPSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTT 1695

Query: 539  STTICVGS*LASPFATTT--------AGPPPALSRGAPWVTTR*KSLT*TGRPATLRRSS 694
             TT    +  +SP  TTT        + PP  ++  +P  T    + T T  P T   S 
Sbjct: 1696 MTTPSPTTTPSSPITTTTTPSSTTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSP 1755

Query: 695  ------PRFASSSSRAPRLRISQWTPMATCGALCS 781
                  P   +  + +P    S  TP   C  LC+
Sbjct: 1756 LTTTPLPPSITPPTFSP---FSTTTPTTPCVPLCN 1787

 Score = 42.7 bits (99), Expect(2) = 3e-11
 Identities = 39/127 (30%), Positives = 52/127 (40%), Gaps = 11/127 (8%)
 Frame = +1

Query: 22   MTSTTSVMPTTAPSARTSLASCSLPTW-----KMAPSSPAPTPSPATATRSRPAPLCIQR 186
            +T+TT+ +PTT PS   S  +   PT         PS P  TPSP T T + P P     
Sbjct: 1442 ITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPP---TT 1498

Query: 187  SGALRWQTSWSLWAMASLLP----CSASLATALWPWLATRPASP--RPIRTVASSRLGPP 348
            + +    T  +  A  + LP     S    T   P   T P+ P   PI    S+   PP
Sbjct: 1499 TPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPP 1558

Query: 349  GAPPTTP 369
               P+ P
Sbjct: 1559 TTTPSPP 1565

 Score = 42.0 bits (97), Expect = 0.014
 Identities = 48/153 (31%), Positives = 67/153 (43%)
 Frame = +2

Query: 353  PRPPRPSPSACAISSRARPPSTWIMPSRWMTSTTSIA*ACTPPRLAPASAPPPPS*KRPS 532
            P PP  +PS    ++   PP+T   PS   T+TT      TPP   P + P PP      
Sbjct: 1399 PSPPTTTPSPPPTTTTTLPPTT--TPSPPTTTTT------TPP---PTTTPSPPI----- 1442

Query: 533  STSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGRPATLRRSSPRFASS 712
            +T+TT    +  + P +TTT  PPP  +   P  TT     T T  P T   ++P   ++
Sbjct: 1443 TTTTTPLPTTTPSPPISTTTT-PPPTTTPSPP--TTTPSPPTTTPSPPTTTTTTPPPTTT 1499

Query: 713  SSRAPRLRISQWTPMATCGALCSTLTRAAAPPS 811
             S      I   TP A+   L  T T   +PP+
Sbjct: 1500 PSPPMTTPI---TPPASTTTLPPTTT--PSPPT 1527

 Score = 40.8 bits (94), Expect = 0.031
 Identities = 38/128 (29%), Positives = 53/128 (40%), Gaps = 15/128 (11%)
 Frame = +2

Query: 359  PPRPSPSACAISSRARPPSTWIMPSRWMTSTTS----------IA*ACTPPRLAPASAP- 505
            PP  +PS    ++   PP+T   PS  +T+TT+          I+   TPP     S P 
Sbjct: 1417 PPTTTPSPPTTTTTTPPPTT--TPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPT 1474

Query: 506  ----PPPS*KRPSSTSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGRP 673
                PP +   P +T+TT    +   SP  TT   PP + +   P  T    + T T  P
Sbjct: 1475 TTPSPPTTTPSPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTTPSPPTTTTTTPP 1534

Query: 674  ATLRRSSP 697
             T   S P
Sbjct: 1535 PTTTPSPP 1542

 Score = 40.4 bits (93), Expect = 0.040
 Identities = 32/133 (24%), Positives = 52/133 (39%)
 Frame = +2

Query: 353  PRPPRPSPSACAISSRARPPSTWIMPSRWMTSTTSIA*ACTPPRLAPASAPPPPS*KRPS 532
            P PP  +  +  I++   PP T    S   T+ +      T P      + P  +   PS
Sbjct: 1657 PSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPS 1716

Query: 533  STSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGRPATLRRSSPRFASS 712
            ST+T     + + +P  TTT  PP       P  TT     T    P+    +   F+++
Sbjct: 1717 STTTPSPPPTTMTTPSPTTTPSPPTTTMTTLPPTTTSSPLTTTPLPPSITPPTFSPFSTT 1776

Query: 713  SSRAPRLRISQWT 751
            +   P + +  WT
Sbjct: 1777 TPTTPCVPLCNWT 1789

 Score = 40.0 bits (92), Expect = 0.052
 Identities = 42/157 (26%), Positives = 55/157 (34%), Gaps = 4/157 (2%)
 Frame = +2

Query: 353  PRPPRPSPSACAISSRARPPSTWIMPSRWMTSTTSIA*ACTPPRLAPASAPPPPS*KRPS 532
            P PP  +PS    ++   PP+T   P      TT I    +   L P + P PP+     
Sbjct: 1477 PSPPTTTPSPPTTTTTTPPPTTTPSPPM----TTPITPPASTTTLPPTTTPSPPT----- 1527

Query: 533  STSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*KSLT*TGRPATLRRSSPRFASS 712
             T+TT        +P  TTT  PP       P  TT     T    P T   + P   + 
Sbjct: 1528 -TTTT--------TPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTP 1578

Query: 713  SSRAPRL----RISQWTPMATCGALCSTLTRAAAPPS 811
            S           I+  TP  T      T T    PP+
Sbjct: 1579 SPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPT 1615

 Score = 37.7 bits (86), Expect = 0.26
 Identities = 36/124 (29%), Positives = 52/124 (41%), Gaps = 9/124 (7%)
 Frame = +1

Query: 25   TSTTSVMPTTAPSARTSLASCSLPTWKMAP-----SSPAPT--PSPATATRSRPAPLCIQ 183
            T+TT++ PTT PS  T+  +   PT   +P     ++P PT  PSP  +T + P P    
Sbjct: 1411 TTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTP 1470

Query: 184  RSGALRWQTSWSLWAMASLLPCSASLATALWPWLATRPASP--RPIRTVASSRLGPPGAP 357
                       +  +  +  P S    T   P   T P+ P   PI   AS+   PP   
Sbjct: 1471 -------SPPTTTPSPPTTTP-SPPTTTTTTPPPTTTPSPPMTTPITPPASTTTLPPTTT 1522

Query: 358  PTTP 369
            P+ P
Sbjct: 1523 PSPP 1526

 Score = 37.4 bits (85), Expect = 0.34
 Identities = 33/122 (27%), Positives = 43/122 (35%), Gaps = 7/122 (5%)
 Frame = +1

Query: 25   TSTTSVMPTTAPSARTSLASCSLPTWKMAP-------SSPAPTPSPATATRSRPAPLCIQ 183
            T+TT+  PTT PS   +  +  LPT   +P         P  TPSP T T S P      
Sbjct: 1427 TTTTTPPPTTTPSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSP 1486

Query: 184  RSGALRWQTSWSLWAMASLLPCSASLATALWPWLATRPASPRPIRTVASSRLGPPGAPPT 363
             +         +  +     P +   +T   P   T   SP    T        P  P T
Sbjct: 1487 PTTTTTTPPPTTTPSPPMTTPITPPASTTTLP--PTTTPSPPTTTTTTPPPTTTPSPPTT 1544

Query: 364  TP 369
            TP
Sbjct: 1545 TP 1546

 Score = 35.4 bits (80), Expect = 1.3
 Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 10/127 (7%)
 Frame = +1

Query: 25   TSTTSVMPTTAPSARTSLASCSLPTWKMAPSSPAPTPSPATATRSRPA-----PLCIQRS 189
            T+TT+  PTT PS  T+       +    P +  P+P P T T   P      P     S
Sbjct: 1607 TTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPSPPTTTTPS 1666

Query: 190  GALRWQTSWSLWAMAS---LLPCSASLATALWPWLATRPASPRPIRTVASSRL--GPPGA 354
              +   T+       S       S    T   P   T P+SP    T  SS     PP  
Sbjct: 1667 PPITTTTTPPPTTTPSSPITTTPSPPTTTMTTPSPTTTPSSPITTTTTPSSTTTPSPPPT 1726

Query: 355  PPTTPFP 375
              TTP P
Sbjct: 1727 TMTTPSP 1733

 Score = 34.3 bits (77), Expect = 2.9
 Identities = 32/125 (25%), Positives = 45/125 (35%)
 Frame = +2

Query: 470  CTPPRLAPASAPPPPS*KRPSSTSTTICVGS*LASPFATTTAGPPPALSRGAPWVTTR*K 649
            C P      +  PP +   P  T+TT    +   SP  TTT  PPP  +   P  TT   
Sbjct: 1389 CWPMDKCITTPSPPTTTPSPPPTTTTTLPPTTTPSPPTTTTTTPPPTTTPSPPITTTTTP 1448

Query: 650  SLT*TGRPATLRRSSPRFASSSSRAPRLRISQWTPMATCGALCSTLTRAAAPPSRQSNGS 829
              T T  P     ++P      +  P    +  +P  T  +  +T T    P +  S   
Sbjct: 1449 LPTTTPSPPISTTTTP----PPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPSPPM 1504

Query: 830  RAPWT 844
              P T
Sbjct: 1505 TTPIT 1509

 Score = 33.9 bits (76), Expect(2) = 1e-07
 Identities = 32/132 (24%), Positives = 47/132 (35%), Gaps = 18/132 (13%)
 Frame = +1

Query: 28   STTSVMPTTAPSARTSLASCSLPTWKMAPSSPAP--------------TPSPATATRSRP 165
            STT++ PTT PS  T+  +   PT   +P +  P              TPSP   T + P
Sbjct: 1513 STTTLPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTP 1572

Query: 166  APLCIQRSGALRWQTSWSLWAMA---SLLPCSASLATALWPWLAT-RPASPRPIRTVASS 333
             P            +  ++       +  P   +  T   P   T  P +  PI    S+
Sbjct: 1573 PPTTTPSPPTTTTPSPPTITTTTPPPTTTPSPPTTTTTTPPPTTTPSPPTTTPITPPTST 1632

Query: 334  RLGPPGAPPTTP 369
               PP   P+ P
Sbjct: 1633 TTLPPTTTPSPP 1644

 Score = 33.5 bits (75), Expect = 4.9
 Identities = 19/49 (38%), Positives = 27/49 (54%)
 Frame = +1

Query: 22   MTSTTSVMPTTAPSARTSLASCSLPTWKMAPSSPAPTPSPATATRSRPA 168
            +T+TT+  PTT PS+  +  + S PT  M   SP  TPS    T + P+
Sbjct: 1669 ITTTTTPPPTTTPSSPIT-TTPSPPTTTMTTPSPTTTPSSPITTTTTPS 1716

 Score = 33.1 bits (74), Expect = 6.4
 Identities = 36/152 (23%), Positives = 57/152 (36%), Gaps = 31/152 (20%)
 Frame = +1

Query: 7    PTSWLMTSTTSVMPTTAP-----------SARTSLASCSLPTWKMAPS----------SP 123
            PT+  +T+TT+V PT  P           +  T++     PT    P+          +P
Sbjct: 4127 PTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTP 4186

Query: 124  APTPS-----PATATRSRPAPLCIQRSGALRWQTSWSLWAMASLLPCSASLATALWPWLA 288
             PTP+     P T T + P       +      T  +  + +S L  S +L + L P + 
Sbjct: 4187 TPTPTGTQTGPPTHTSTAPIAELTTSNPPPESSTPQTSRSTSSPLTESTTLLSTLPPAIE 4246

Query: 289  TRPASP-----RPIRTVASSRLGPPGAPPTTP 369
                +P      P  T     L PP +  T+P
Sbjct: 4247 MTSTAPPSTPTAPTTTSGGHTLSPPPSTTTSP 4278

 Score = 32.7 bits (73), Expect(2) = 0.002
 Identities = 32/133 (24%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
 Frame = +1

Query: 7    PTSWLMTSTTSVMPTTAPSARTSLASCSLPTWKMAPSSP------APTPSPATATRS--- 159
            PT+  +T+TT+V PT  P+   +  +  + T      +P       PT +P T T +   
Sbjct: 4081 PTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTP 4140

Query: 160  RPAPLCIQRSGALRWQTSWSLWAMASLLPCSASLAT---ALWPWLATRPASPRPIRTVAS 330
             P P   Q        T+  +    ++ P      T      P   T   +P P  T   
Sbjct: 4141 TPTPTGTQT------PTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTP--TPTG 4192

Query: 331  SRLGPPGAPPTTP 369
            ++ GPP    T P
Sbjct: 4193 TQTGPPTHTSTAP 4205

 Score = 31.2 bits (69), Expect(2) = 0.002
 Identities = 30/113 (26%), Positives = 46/113 (40%), Gaps = 7/113 (6%)
 Frame = +2

Query: 410  PSTWIMPSRWMTSTTSIA*ACTPPRLAPASAPPPPS*KRPSSTSTTICVGS*LASPFATT 589
            P T    S  +T +T++  +  PP +   S  PP +   P++TS     G    SP  +T
Sbjct: 4221 PQTSRSTSSPLTESTTLL-STLPPAIEMTSTAPPSTPTAPTTTS-----GGHTLSPPPST 4274

Query: 590  TAGPPPALSRG-------APWVTTR*KSLT*TGRPATLRRSSPRFASSSSRAP 727
            T  PP   +RG       AP  +T   + T    P     S+P    ++   P
Sbjct: 4275 TTSPPGTPTRGTTTGSSSAPTPSTVQTTTTSAWTPTPTPLSTPSIIRTTGLRP 4327



EST assemble image


clone accession position
1 LC034b09_r AV621307 1 471
2 MX010f06_r BP086520 7 393
3 MX231c10_r BP090936 7 405
4 HC036d02_r AV634676 213 723
5 HC091d05_r AV638829 215 620
6 LC002g11_r AV619031 230 756
7 LC081b06_r AV624679 254 779
8 CM067g08_r AV390911 271 792
9 MX209c11_r BP089536 304 611
10 LC048c12_r AV622337 337 892




Chlamydomonas reinhardtii
Kazusa DNA Research Institute