KCC001594A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001594A_C01 KCC001594A_c01
aacaCTCTGCTCTTAGCTTTCTCTATCTTAGTCTTGGCTAGGTTCGCTAGTTGCTGCTGT
TGGCGCGGAGATCCCCACGCCTCTAGAAGTCCCCAAACATATTTGTAGGGTAGCTGCGAT
GACGGACGCGCTGGCAGCATCTCTCCTGCGCAAGCAGCTGAAGGAGCTCACCAGGAACCC
CGTGGATGGCTTCTCGGCTGGTCTAGTCGATGATAGCAACGTGTTCGAGTGGCAGGTCAC
CATCATTGGGCCCCCGGGAGACACTCTACGAGGGGGGATTCTTTAATGCGCGGCTGACGT
TCCCTAAGGACTACCCCAACTCCCCGCCCACGTGCCGTTTCACATCCGAGATGTGGCACC
CCAACGTGTACGACGACGGCAAGGTGTGTATCTCCATCCTGCACAGCCCGGGCGATGACC
CCAGCGGTTACGAGACCGCGGCGGAGCGCTGGTCACCAGTGCACACGGTGGAGACCATTA
TGATCTCAATCATCTCCATGCTATCGTCCCCCAACGACGAGTCTCCCGCCAACGTGGACG
CCGCAAAGATGTGGCGTGAAAACCGGGATGAGTTTAAGAAGCGTGTCGCGCGCATTGTGC
GCAAGTCACAGGAGATGCTCTAGAGCGGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001594A_C01 KCC001594A_c01
         (630 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 (Ubiquiti...   220  1e-56
gb|AAL86003.1| putative E2, ubiquitin-conjugating enzyme UBC7 [A...   220  1e-56
gb|AAO64200.1| putative E2, ubiquitin-conjugating enzyme UBC7 [A...   220  1e-56
ref|NP_568902.1| ubiquitin-conjugating enzyme 7 (UBC7) [Arabidop...   220  1e-56
dbj|BAB67890.1| putative Ubiquitin carrier protein UBC7 [Oryza s...   216  2e-55

>sp|Q42540|UBC7_ARATH Ubiquitin-conjugating enzyme E2 7 (Ubiquitin-protein ligase 7)
           (Ubiquitin carrier protein 7) gi|2129758|pir||S71209
           ubiquitin-protein ligase (EC 6.3.2.19) UBC7 [similarity]
           - Arabidopsis thaliana gi|992704|gb|AAC49321.1| UBC7
           gi|9759251|dbj|BAB09775.1| ubiquitin-conjugating enzyme
           UBC7 [Arabidopsis thaliana]
          Length = 166

 Score =  220 bits (561), Expect = 1e-56
 Identities = 99/124 (79%), Positives = 114/124 (91%)
 Frame = +3

Query: 246 LGPRETLYEGGFFNARLTFPKDYPNSPPTCRFTSEMWHPNVYDDGKVCISILHSPGDDPS 425
           +GP +TLYEGGFFNA +TFP++YPNSPPT RFTS+MWHPNVY DG+VCISILH PGDDPS
Sbjct: 42  IGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPS 101

Query: 426 GYETAAERWSPVHTVETIMISIISMLSSPNDESPANVDAAKMWRENRDEFKKRVARIVRK 605
           GYE A+ERW+PVHTVE+IM+SIISMLS PNDESPANV+AAK WR+ RDEFKK+V+R VRK
Sbjct: 102 GYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRK 161

Query: 606 SQEM 617
           SQEM
Sbjct: 162 SQEM 165

 Score = 75.9 bits (185), Expect = 5e-13
 Identities = 37/69 (53%), Positives = 44/69 (63%)
 Frame = +2

Query: 134 AASLLRKQLKELTRNPVDGFSAGLVDDSNVFEWQVTIIGPPGDTLRGGIL*CAADVP*GL 313
           A+ LL+KQLK+L ++PVDGFSAGLVD+ N+FEW VTIIGPP     GG        P   
Sbjct: 5   ASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNY 64

Query: 314 PQLPAHVPF 340
           P  P  V F
Sbjct: 65  PNSPPTVRF 73

>gb|AAL86003.1| putative E2, ubiquitin-conjugating enzyme UBC7 [Arabidopsis
           thaliana]
          Length = 187

 Score =  220 bits (561), Expect = 1e-56
 Identities = 99/124 (79%), Positives = 114/124 (91%)
 Frame = +3

Query: 246 LGPRETLYEGGFFNARLTFPKDYPNSPPTCRFTSEMWHPNVYDDGKVCISILHSPGDDPS 425
           +GP +TLYEGGFFNA +TFP++YPNSPPT RFTS+MWHPNVY DG+VCISILH PGDDPS
Sbjct: 63  IGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPS 122

Query: 426 GYETAAERWSPVHTVETIMISIISMLSSPNDESPANVDAAKMWRENRDEFKKRVARIVRK 605
           GYE A+ERW+PVHTVE+IM+SIISMLS PNDESPANV+AAK WR+ RDEFKK+V+R VRK
Sbjct: 123 GYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRK 182

Query: 606 SQEM 617
           SQEM
Sbjct: 183 SQEM 186

 Score = 75.9 bits (185), Expect = 5e-13
 Identities = 37/69 (53%), Positives = 44/69 (63%)
 Frame = +2

Query: 134 AASLLRKQLKELTRNPVDGFSAGLVDDSNVFEWQVTIIGPPGDTLRGGIL*CAADVP*GL 313
           A+ LL+KQLK+L ++PVDGFSAGLVD+ N+FEW VTIIGPP     GG        P   
Sbjct: 26  ASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNY 85

Query: 314 PQLPAHVPF 340
           P  P  V F
Sbjct: 86  PNSPPTVRF 94

>gb|AAO64200.1| putative E2, ubiquitin-conjugating enzyme UBC7 [Arabidopsis
           thaliana]
          Length = 203

 Score =  220 bits (561), Expect = 1e-56
 Identities = 99/124 (79%), Positives = 114/124 (91%)
 Frame = +3

Query: 246 LGPRETLYEGGFFNARLTFPKDYPNSPPTCRFTSEMWHPNVYDDGKVCISILHSPGDDPS 425
           +GP +TLYEGGFFNA +TFP++YPNSPPT RFTS+MWHPNVY DG+VCISILH PGDDPS
Sbjct: 79  IGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPS 138

Query: 426 GYETAAERWSPVHTVETIMISIISMLSSPNDESPANVDAAKMWRENRDEFKKRVARIVRK 605
           GYE A+ERW+PVHTVE+IM+SIISMLS PNDESPANV+AAK WR+ RDEFKK+V+R VRK
Sbjct: 139 GYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRK 198

Query: 606 SQEM 617
           SQEM
Sbjct: 199 SQEM 202

 Score = 75.9 bits (185), Expect = 5e-13
 Identities = 37/69 (53%), Positives = 44/69 (63%)
 Frame = +2

Query: 134 AASLLRKQLKELTRNPVDGFSAGLVDDSNVFEWQVTIIGPPGDTLRGGIL*CAADVP*GL 313
           A+ LL+KQLK+L ++PVDGFSAGLVD+ N+FEW VTIIGPP     GG        P   
Sbjct: 42  ASLLLQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNY 101

Query: 314 PQLPAHVPF 340
           P  P  V F
Sbjct: 102 PNSPPTVRF 110

>ref|NP_568902.1| ubiquitin-conjugating enzyme 7 (UBC7) [Arabidopsis thaliana]
          Length = 198

 Score =  220 bits (561), Expect = 1e-56
 Identities = 99/124 (79%), Positives = 114/124 (91%)
 Frame = +3

Query: 246 LGPRETLYEGGFFNARLTFPKDYPNSPPTCRFTSEMWHPNVYDDGKVCISILHSPGDDPS 425
           +GP +TLYEGGFFNA +TFP++YPNSPPT RFTS+MWHPNVY DG+VCISILH PGDDPS
Sbjct: 74  IGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPS 133

Query: 426 GYETAAERWSPVHTVETIMISIISMLSSPNDESPANVDAAKMWRENRDEFKKRVARIVRK 605
           GYE A+ERW+PVHTVE+IM+SIISMLS PNDESPANV+AAK WR+ RDEFKK+V+R VRK
Sbjct: 134 GYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRK 193

Query: 606 SQEM 617
           SQEM
Sbjct: 194 SQEM 197

 Score = 38.5 bits (88), Expect = 0.081
 Identities = 19/44 (43%), Positives = 20/44 (45%)
 Frame = +2

Query: 209 DDSNVFEWQVTIIGPPGDTLRGGIL*CAADVP*GLPQLPAHVPF 340
           D  N+FEW VTIIGPP     GG        P   P  P  V F
Sbjct: 62  DCYNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRF 105

>dbj|BAB67890.1| putative Ubiquitin carrier protein UBC7 [Oryza sativa (japonica
           cultivar-group)] gi|21104618|dbj|BAB93210.1| putative
           Ubiquitin carrier protein UBC7 [Oryza sativa (japonica
           cultivar-group)]
          Length = 169

 Score =  216 bits (550), Expect = 2e-55
 Identities = 95/125 (76%), Positives = 115/125 (92%)
 Frame = +3

Query: 246 LGPRETLYEGGFFNARLTFPKDYPNSPPTCRFTSEMWHPNVYDDGKVCISILHSPGDDPS 425
           +GP +TLY+GG+FNA ++FP++YPNSPPT RFTSEMWHPNVY DG+VCISILH PGDDP+
Sbjct: 45  IGPPDTLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISILHPPGDDPN 104

Query: 426 GYETAAERWSPVHTVETIMISIISMLSSPNDESPANVDAAKMWRENRDEFKKRVARIVRK 605
           GYE A+ERW+PVHTVE+I++SIISMLS PNDESPAN++AAK WRE RD+FKK+V R+VRK
Sbjct: 105 GYELASERWTPVHTVESIVLSIISMLSGPNDESPANIEAAKEWREKRDDFKKKVRRLVRK 164

Query: 606 SQEML 620
           SQEML
Sbjct: 165 SQEML 169

 Score = 82.4 bits (202), Expect = 5e-15
 Identities = 43/75 (57%), Positives = 49/75 (65%)
 Frame = +2

Query: 116 AMTDALAASLLRKQLKELTRNPVDGFSAGLVDDSNVFEWQVTIIGPPGDTLRGGIL*CAA 295
           A T + A+ LL+KQLK+L ++PVDGFSAGLVDDSNVFEWQVTIIGPP     GG      
Sbjct: 2   AATISQASLLLQKQLKDLAKHPVDGFSAGLVDDSNVFEWQVTIIGPPDTLYDGGYFNAIM 61

Query: 296 DVP*GLPQLPAHVPF 340
             P   P  P  V F
Sbjct: 62  SFPQNYPNSPPTVRF 76



EST assemble image


clone accession position
1 LCL030g08_r AV627703 1 321
2 LC067d03_r AV623692 5 543
3 HC023e09_r AV633652 7 319
4 CM067c06_r AV390932 9 564
5 HC070e12_r AV637242 16 524
6 MXL069c11_r BP097057 21 401
7 HCL068g10_r AV643390 21 488
8 LC034b11_r AV621309 21 548
9 HCL020h12_r AV640702 21 550
10 MX230c11_r BP090868 22 453
11 MX241f10_r BP091612 142 630




Chlamydomonas reinhardtii
Kazusa DNA Research Institute