KCC001591A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001591A_C01 KCC001591A_c01
cgaccaccaagtacgcgctgcagtctaatccCAATCACTCAGTCGCTCCTCAAACCCAGA
AACCTCACATTTCCGCTTCCAGCAGCTGCTTCCAGTTGCCCTGCGTCGTAGCGCTTCGTA
GCTACCCCTAAGCATCCTAnTTCTTACGTTTACACAAGCATTACATAGCTATCGTGCATT
GCGCAACGAGCGCGACCGACAAGTTCAGGTGCCCGCTCAACCACCGGCGGTGGACCTCCG
CAACACCTGACTCCCCGACGCCCATCGGTGAAGGGCCCGnCAGGnTGGGnTCAGACCnAn
TGnAAGGGGCGAAATAnCTTTGGGGCCAAGAAGGAGGAAGCTCCCAAGCCCACACTAGAC
GAGACCACTGACCGCCTGAACACACGCGGTGATACAGCCGATGCAAAGATCCGCGCACTG
GATGAGCAGCTAGCGAAGTACAAGGAGCAAATCAAGAAGACGCGGCCAGGGCCGGCGCAA
GATGCCATCAAGCGGCGAGCGCTGCAGGTTCTGAAGCAGCGCAAGCTGTATGAGAGCCAG
CGCGAGCAACTGTACCAGCAGCAGTTCAACCTGGAGCAGACGCGCTTCACAGGGGACAGC
ATCAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001591A_C01 KCC001591A_c01
         (605 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_187675.2| expressed protein [Arabidopsis thaliana] gi|856...   123  2e-27
gb|AAG51378.1|AC011560_10 unknown protein; 22452-23721 [Arabidop...   123  2e-27
dbj|BAB16321.1| P0436E04.3 [Oryza sativa (japonica cultivar-grou...   119  3e-26
dbj|BAB64257.1| P0672D08.33 [Oryza sativa (japonica cultivar-gro...   119  3e-26
gb|AAM66939.1| unknown [Arabidopsis thaliana]                         117  1e-25

>ref|NP_187675.2| expressed protein [Arabidopsis thaliana] gi|8567798|gb|AAF76370.1|
           unknown protein [Arabidopsis thaliana]
           gi|29028830|gb|AAO64794.1| At3g10640 [Arabidopsis
           thaliana]
          Length = 235

 Score =  123 bits (308), Expect = 2e-27
 Identities = 54/98 (55%), Positives = 74/98 (75%)
 Frame = +1

Query: 310 RNXFGAKKEEAPKPTLDETTDRLNTRGDTADAKIRALDEQLAKYKEQIKKTRPGPAQDAI 489
           R  FGAKK   P P++ + +DR+N RGD+ + KI+ LD +L KYKEQ+KKTRPGPAQ+A+
Sbjct: 2   RRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVELCKYKEQLKKTRPGPAQEAV 61

Query: 490 KRRALQVLKQRKLYESQREQLYQQQFNLEQTRFTGDSI 603
           K RA++VLKQ+K+YE QR+ LY Q FNL+Q  F  + +
Sbjct: 62  KARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGL 99

>gb|AAG51378.1|AC011560_10 unknown protein; 22452-23721 [Arabidopsis thaliana]
          Length = 221

 Score =  123 bits (308), Expect = 2e-27
 Identities = 54/98 (55%), Positives = 74/98 (75%)
 Frame = +1

Query: 310 RNXFGAKKEEAPKPTLDETTDRLNTRGDTADAKIRALDEQLAKYKEQIKKTRPGPAQDAI 489
           R  FGAKK   P P++ + +DR+N RGD+ + KI+ LD +L KYKEQ+KKTRPGPAQ+A+
Sbjct: 2   RRVFGAKKNTEPPPSIQDASDRINKRGDSVEDKIKKLDVELCKYKEQLKKTRPGPAQEAV 61

Query: 490 KRRALQVLKQRKLYESQREQLYQQQFNLEQTRFTGDSI 603
           K RA++VLKQ+K+YE QR+ LY Q FNL+Q  F  + +
Sbjct: 62  KARAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGL 99

>dbj|BAB16321.1| P0436E04.3 [Oryza sativa (japonica cultivar-group)]
           gi|20804449|dbj|BAB92146.1| hypothetical protein~similar
           to Oryza sativa chromosome 5, AC073405_20 [Oryza sativa
           (japonica cultivar-group)]
          Length = 232

 Score =  119 bits (299), Expect = 3e-26
 Identities = 51/98 (52%), Positives = 74/98 (75%)
 Frame = +1

Query: 310 RNXFGAKKEEAPKPTLDETTDRLNTRGDTADAKIRALDEQLAKYKEQIKKTRPGPAQDAI 489
           +  FGAKK + P P++ + T+R+N RG++ D KI+ LDE+L +YKEQI+KTRPGP+QDAI
Sbjct: 2   KKIFGAKKSKDPPPSIQDATERINKRGESVDDKIKKLDEELGRYKEQIRKTRPGPSQDAI 61

Query: 490 KRRALQVLKQRKLYESQREQLYQQQFNLEQTRFTGDSI 603
           K RA+++LK +++YE QR  LY Q +NL+Q  F  D +
Sbjct: 62  KARAIRLLKHKRMYEEQRNMLYNQTYNLDQVAFAADGL 99

>dbj|BAB64257.1| P0672D08.33 [Oryza sativa (japonica cultivar-group)]
          Length = 170

 Score =  119 bits (299), Expect = 3e-26
 Identities = 51/98 (52%), Positives = 74/98 (75%)
 Frame = +1

Query: 310 RNXFGAKKEEAPKPTLDETTDRLNTRGDTADAKIRALDEQLAKYKEQIKKTRPGPAQDAI 489
           +  FGAKK + P P++ + T+R+N RG++ D KI+ LDE+L +YKEQI+KTRPGP+QDAI
Sbjct: 2   KKIFGAKKSKDPPPSIQDATERINKRGESVDDKIKKLDEELGRYKEQIRKTRPGPSQDAI 61

Query: 490 KRRALQVLKQRKLYESQREQLYQQQFNLEQTRFTGDSI 603
           K RA+++LK +++YE QR  LY Q +NL+Q  F  D +
Sbjct: 62  KARAIRLLKHKRMYEEQRNMLYNQTYNLDQVAFAADGL 99

>gb|AAM66939.1| unknown [Arabidopsis thaliana]
          Length = 235

 Score =  117 bits (293), Expect = 1e-25
 Identities = 50/98 (51%), Positives = 73/98 (74%)
 Frame = +1

Query: 310 RNXFGAKKEEAPKPTLDETTDRLNTRGDTADAKIRALDEQLAKYKEQIKKTRPGPAQDAI 489
           +  FGAK  + P P++ + +DR+N RGD+ + K++ LD +L KYK+QIK+TRPGPA +AI
Sbjct: 2   KRIFGAKNNKEPPPSIQDASDRINKRGDSVEEKVKRLDAELCKYKDQIKRTRPGPALEAI 61

Query: 490 KRRALQVLKQRKLYESQREQLYQQQFNLEQTRFTGDSI 603
           K RA++VLKQ+K+YE QR+ LY Q FNL+Q  F  + +
Sbjct: 62  KTRAMRVLKQKKMYEGQRDMLYNQTFNLDQVSFAAEGL 99



EST assemble image


clone accession position
1 LC054d12_r AV622784 1 609
2 CM066d02_r AV390843 32 657




Chlamydomonas reinhardtii
Kazusa DNA Research Institute