KCC001584A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001584A_C01 KCC001584A_c01
CATCAGCGTCGGCTTACAAAGAAAGCGCGAGGGAAGGACATCCAGCTTGCATCGACGGCA
CGACCGTACCACACACCCCGCCACTGAACTGTCACGCAACCCCAGCTACCCGCACCTGGA
CTTGGCAAGCTTTCCCACATCAACTGATTGTAACATAAAAGATCAGACAAGTGATTCCTC
CGCCCATCCTGCTGCACTGGTGGATGCGTGGCCGTGTGCACTTTCACGGCTTTCCTTTCA
ACCGCCCAGTGCGCCGACGTCCCTTGCACGTCACTTATCATGAGCTACCTCTACGCTCTC
TGCCGCGAAATGCAGGATGCGGGATAACTTGCAATGCTCTAGGCAATCTTAATTCCTACG
AATGCTCCTGTACATACGCACAGGGCGCACTCACGAATTCATGCCCATCCACCGACCGTG
CGCTCTCTCGCTCGTGGACCAATGCCTTCCAGCTGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001584A_C01 KCC001584A_c01
         (456 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_352277.1| similar to ENSANGP00000004655 [Homo sapiens]          33  1.1
dbj|BAB21774.1| KIAA1683 protein [Homo sapiens]                        33  1.1
gb|AAL84235.1|AF454955_1 putative outer membrane iron receptor [...    33  1.5
ref|NP_857597.1| hypothetical protein FLJ32110 [Homo sapiens] gi...    32  4.3
ref|XP_294323.1| similar to Hypothetical protein KIAA0553 [Homo ...    32  4.3

>ref|XP_352277.1| similar to ENSANGP00000004655 [Homo sapiens]
          Length = 551

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 28/85 (32%), Positives = 41/85 (47%), Gaps = 11/85 (12%)
 Frame = +2

Query: 44  SLHRRHDRTTHPATELSRNPSYPHLDLASFPTSTDCNIKD--QTSD----SSAHPAALV- 202
           +LH    +T HP + ++ NPS   +    FPT+   N  D  +TSD    +S +P   V 
Sbjct: 232 ALHPDPSKTPHPESHVTHNPSPTEISQTEFPTTYYQNATDVPRTSDPQISTSLYPETPVP 291

Query: 203 ---DAWPCALSRLSFQP-PSAPTSL 265
              DA   AL+ LS  P P  P ++
Sbjct: 292 FKDDA--TALNELSLNPKPGTPAAI 314

>dbj|BAB21774.1| KIAA1683 protein [Homo sapiens]
          Length = 832

 Score = 33.5 bits (75), Expect = 1.1
 Identities = 19/54 (35%), Positives = 27/54 (49%)
 Frame = +2

Query: 83  TELSRNPSYPHLDLASFPTSTDCNIKDQTSDSSAHPAALVDAWPCALSRLSFQP 244
           TE+S +P+YP   +  +PT        + S S AHP  L +  P A    S+QP
Sbjct: 98  TEVSPSPTYPSQAIREYPTLAQPFQPTEVSPSPAHPYQLTEVSPSA--AYSYQP 149

 Score = 30.8 bits (68), Expect = 7.3
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 80  ATELSRNPSYPHLDLASFPTSTDCNIKDQTSDSSAHPAALVDAWP 214
           ATE+S +P+YP+      P+S   ++  + S S  +P+ L +  P
Sbjct: 175 ATEVSPSPTYPYQPTEISPSSGYLSVATEVSPSPGYPSQLTEVSP 219

>gb|AAL84235.1|AF454955_1 putative outer membrane iron receptor [Rhodovulum sulfidophilum]
          Length = 730

 Score = 33.1 bits (74), Expect = 1.5
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
 Frame = +2

Query: 59  HDRTTHPATELSRNPSYPHLDLASFPTSTDCNIKDQT-------SDSSAHPAALVDAWPC 217
           HD T +   E +R+P Y     A++  + D  ++          SD +  PAA VD +  
Sbjct: 621 HDGTKYEGNEFARSPGYSVGLGAAWDITPDVTLQGDMRYVDGYYSDDTNEPAAEVDGYAL 680

Query: 218 ALSRLSFQP 244
           A  RLS++P
Sbjct: 681 ANMRLSYRP 689

>ref|NP_857597.1| hypothetical protein FLJ32110 [Homo sapiens]
            gi|31540753|gb|AAP49447.1| hypothetical protein FLJ32110
            [Homo sapiens]
          Length = 1349

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 104  SYPHLDLASFPTSTDCNIKDQTSDSSAHPAALVDAWPCALSRLSFQ--PPSA--PTSLAR 271
            S  H    SF T T   I    +  + HP  LV A P   S ++ Q  PP+A  PT    
Sbjct: 1239 SQAHFSPISFSTLTPTIIPAHPTFLAGHPLHLVAATPFHPSHITLQPLPPTAFIPTLFGP 1298

Query: 272  HLS*ATSTL 298
            HL+ AT+++
Sbjct: 1299 HLNPATTSI 1307

>ref|XP_294323.1| similar to Hypothetical protein KIAA0553 [Homo sapiens]
          Length = 1188

 Score = 31.6 bits (70), Expect = 4.3
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 104  SYPHLDLASFPTSTDCNIKDQTSDSSAHPAALVDAWPCALSRLSFQ--PPSA--PTSLAR 271
            S  H    SF T T   I    +  + HP  LV A P   S ++ Q  PP+A  PT    
Sbjct: 1078 SQAHFSPISFSTLTPTIIPAHPTFLAGHPLHLVAATPFHPSHITLQPLPPTAFIPTLFGP 1137

Query: 272  HLS*ATSTL 298
            HL+ AT+++
Sbjct: 1138 HLNPATTSI 1146



EST assemble image


clone accession position
1 CM065f11_r AV391106 1 585
2 LCL027d09_r AV627485 1 139




Chlamydomonas reinhardtii
Kazusa DNA Research Institute