KCC001571A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001571A_C01 KCC001571A_c01
cgtgtgccttttCCAGTTGTCTTAGAAAGCTCTCTGGCGAGCCCTTGCTGCGAGAAGAAA
TGTTTTGACAGTCCTTGTGAGCGCAACGAGAATGGCAAAAAGTCCTACGCAGTTTGTAGA
CATCCAGACGGCGCCAGCTCAAGTAAACGGCTGTCAGGCTGTTACTCCAGGCTTGCTAAT
AAGCAGCTTTGCAGTTGAGGCGTCGGAAAGCCAGCTAAGAGAGCAAGGAGTTACACACAT
TTTACAGGTTGGGATAGAGCTCAAGTCATCACACCCTGGCAAATTCGAGTACCTGGTGGT
GCCCATCCTAGATGCCGAGGGCGTTGACCTGGTGGCCACGCTGCCGCCGATGTTTGGCTT
CATCGAGGCGGCTGCCGCCAAAGGCGGCGTTGTGCTGGTTCACTGCATGATGGGCATCAG
CCGCTCCGCCTCCACCGTCATCGCCTACCTCATGTGGAAGGAGCACATCGGCTTCGTGGC
GGCGGCGGAGCGCGTGTACGCTGCGCGGCCCTTCATCTCGCCCAACCCGGGCTTCGTGCT
GCAGCTGCGGCTGTGGGAGAAGATGGGCATGGACTTCGCGGGCTGGCAGGGGTGGAGCAG
GACAAAGTTCCTGGAGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001571A_C01 KCC001571A_c01
         (618 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q39491|PTP3_CHLEU Dual specificity protein phosphatase gi|113...   143  2e-33
ref|NP_850522.1| dual-specificity protein phosphatase -related [...   103  2e-21
dbj|BAC01163.1| dual-specificity phosphatase SKRP1 [Mus musculus]     100  1e-20
dbj|BAB26718.1| unnamed protein product [Mus musculus]                100  1e-20
ref|NP_077758.1| dual specificity phosphatase 19 [Mus musculus] ...   100  1e-20

>sp|Q39491|PTP3_CHLEU Dual specificity protein phosphatase gi|11357127|pir||T48906
           protein-tyrosine-phosphatase (EC 3.1.3.48) [imported] -
           Chlamydomonas eugametos gi|992594|emb|CAA54910.1|
           tyrosine phosphate [Chlamydomonas eugametos]
          Length = 276

 Score =  143 bits (360), Expect = 2e-33
 Identities = 77/146 (52%), Positives = 95/146 (64%), Gaps = 1/146 (0%)
 Frame = +2

Query: 131 APAQVNGCQAVTPG-LLISSFAVEASESQLREQGVTHILQVGIELKSSHPGKFEYLVVPI 307
           A A       + PG L++SS  VE S   L + GVTHILQVG ELK SHPG+F YL +PI
Sbjct: 80  AKALEGDASVIVPGKLILSSCEVEESSELLTKLGVTHILQVGEELKPSHPGRFTYLSLPI 139

Query: 308 LDAEGVDLVATLPPMFGFIEAAAAKGGVVLVHCMMGISRSASTVIAYLMWKEHIGFVAAA 487
           LD EG D+VA LP  F F++ A A GGV LVHC+ GISRSAS VIAYLMW + + +  A 
Sbjct: 140 LDMEGQDIVALLPSCFQFLQQAQASGGVCLVHCLAGISRSASVVIAYLMWTQGMPYTEAR 199

Query: 488 ERVYAARPFISPNPGFVLQLRLWEKM 565
             V  AR  + PN GF LQL+  +++
Sbjct: 200 AMVRRARSKVYPNTGFTLQLQELDRL 225

>ref|NP_850522.1| dual-specificity protein phosphatase -related [Arabidopsis
           thaliana] gi|6862915|gb|AAF30304.1|AC018907_4 putative
           dual-specificity protein phosphatase [Arabidopsis
           thaliana] gi|26449975|dbj|BAC42108.1| putative
           dual-specificity protein phosphatase [Arabidopsis
           thaliana] gi|28827648|gb|AAO50668.1| putative
           dual-specificity protein phosphatase [Arabidopsis
           thaliana]
          Length = 167

 Score =  103 bits (258), Expect = 2e-21
 Identities = 54/134 (40%), Positives = 75/134 (55%)
 Frame = +2

Query: 161 VTPGLLISSFAVEASESQLREQGVTHILQVGIELKSSHPGKFEYLVVPILDAEGVDLVAT 340
           +  GL I S A   ++  L+   +TH+L V + L   +P  F Y V+ ++D    DL   
Sbjct: 28  IQQGLFIGSVAEANNKDFLKSSNITHVLTVAVALAPPYPDDFVYKVIEVVDRSETDLTVY 87

Query: 341 LPPMFGFIEAAAAKGGVVLVHCMMGISRSASTVIAYLMWKEHIGFVAAAERVYAARPFIS 520
               + FI+ A   GG VLVHC MG+SRS + V+AYLM K  +GF  A E V + R    
Sbjct: 88  FDECYSFIDQAIQSGGGVLVHCFMGMSRSVTIVVAYLMKKHGMGFSKAMELVRSRRHQAY 147

Query: 521 PNPGFVLQLRLWEK 562
           PNPGF+ QL+ +EK
Sbjct: 148 PNPGFISQLQQFEK 161

>dbj|BAC01163.1| dual-specificity phosphatase SKRP1 [Mus musculus]
          Length = 220

 Score =  100 bits (250), Expect = 1e-20
 Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
 Frame = +2

Query: 122 IQTAPAQVNGCQ------------AVTPGLLISSFAVEASESQLREQGVTHILQVGIELK 265
           ++T P+   GC              + P LL+ S         LR+  VTHIL V   ++
Sbjct: 43  VETEPSGGGGCGYVQDLTLDLQVGVIKPWLLLGSQDAAHDLELLRKHKVTHILNVAYGVE 102

Query: 266 SSHPGKFEYLVVPILDAEGVDLVATLPPMFGFIEAAAAKGGVVLVHCMMGISRSASTVIA 445
           ++   +F Y  + ILD    ++++  P  F FIE A  K GVVLVHC  G+SR+A+ VI 
Sbjct: 103 NAFLSEFTYKTISILDVPETNILSYFPECFEFIEQAKLKDGVVLVHCNAGVSRAAAIVIG 162

Query: 446 YLMWKEHIGFVAAAERVYAARPFISPNPGFVLQLRLWE 559
           +LM  E   F  A   V  ARP I PNPGF+ QLR ++
Sbjct: 163 FLMSSEEATFTTALSLVKEARPSICPNPGFMEQLRTYQ 200

>dbj|BAB26718.1| unnamed protein product [Mus musculus]
          Length = 220

 Score =  100 bits (250), Expect = 1e-20
 Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
 Frame = +2

Query: 122 IQTAPAQVNGCQ------------AVTPGLLISSFAVEASESQLREQGVTHILQVGIELK 265
           ++T P+   GC              + P LL+ S         LR+  VTHIL V   ++
Sbjct: 43  VETEPSGGGGCGYVQDLTLDLQVGVIKPWLLLGSQDAAHDLELLRKHKVTHILNVAYGVE 102

Query: 266 SSHPGKFEYLVVPILDAEGVDLVATLPPMFGFIEAAAAKGGVVLVHCMMGISRSASTVIA 445
           ++   +F Y  + ILD    ++++  P  F FIE A  K GVVLVHC  G+SR+A+ VI 
Sbjct: 103 NAFLSEFTYKTISILDVPETNILSYFPECFEFIEQAKLKDGVVLVHCNSGVSRAAAIVIG 162

Query: 446 YLMWKEHIGFVAAAERVYAARPFISPNPGFVLQLRLWE 559
           +LM  E   F  A   V  ARP I PNPGF+ QLR ++
Sbjct: 163 FLMSSEEATFTTALSLVKEARPSICPNPGFMEQLRTYQ 200

>ref|NP_077758.1| dual specificity phosphatase 19 [Mus musculus]
           gi|13183065|gb|AAK15036.1| dual-specificity phosphatase
           TS-DSP1 [Mus musculus] gi|18146954|dbj|BAB82498.1|
           protein phosphatase [Mus musculus]
           gi|18204392|gb|AAH21591.1| Dual specificity phosphatase
           19 [Mus musculus] gi|26346789|dbj|BAC37043.1| unnamed
           protein product [Mus musculus]
          Length = 220

 Score =  100 bits (250), Expect = 1e-20
 Identities = 59/158 (37%), Positives = 82/158 (51%), Gaps = 12/158 (7%)
 Frame = +2

Query: 122 IQTAPAQVNGCQ------------AVTPGLLISSFAVEASESQLREQGVTHILQVGIELK 265
           ++T P+   GC              + P LL+ S         LR+  VTHIL V   ++
Sbjct: 43  VETEPSGGGGCGYVQDLTLDLQVGVIKPWLLLGSQDAAHDLELLRKHKVTHILNVAYGVE 102

Query: 266 SSHPGKFEYLVVPILDAEGVDLVATLPPMFGFIEAAAAKGGVVLVHCMMGISRSASTVIA 445
           ++   +F Y  + ILD    ++++  P  F FIE A  K GVVLVHC  G+SR+A+ VI 
Sbjct: 103 NAFLSEFTYKTISILDVPETNILSYFPECFEFIEQAKLKDGVVLVHCNAGVSRAAAIVIG 162

Query: 446 YLMWKEHIGFVAAAERVYAARPFISPNPGFVLQLRLWE 559
           +LM  E   F  A   V  ARP I PNPGF+ QLR ++
Sbjct: 163 FLMSSEEATFTTALSLVKEARPSICPNPGFMEQLRTYQ 200



EST assemble image


clone accession position
1 LC008h01_r AV619476 1 378
2 LC071a03_r AV623958 13 502
3 MXL036b08_r BP095120 13 389
4 CM064b03_r AV390946 13 537
5 LC023g07_r AV620566 13 441
6 MX053b01_r BP088165 23 359
7 LC059g07_r AV623162 98 618




Chlamydomonas reinhardtii
Kazusa DNA Research Institute