Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC001570A_C02 KCC001570A_c02
(706 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus] 47 2e-04
ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|2635495... 46 6e-04
ref|NP_057417.2| splicing coactivator subunit SRm300; RNA bindin... 44 0.003
gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Ho... 44 0.003
dbj|BAA83713.1| RNA binding protein [Homo sapiens] 44 0.003
>ref|XP_128495.3| RIKEN cDNA 5033413A03 [Mus musculus]
Length = 2607
Score = 47.4 bits (111), Expect = 2e-04
Identities = 55/164 (33%), Positives = 75/164 (45%), Gaps = 7/164 (4%)
Frame = -2
Query: 693 APAAACPCSRAASPAPRQAAAAAHSKSR----QQLQSARRYRKSRSATRHCEPGSSERPA 526
+PA SR+ +P R HS+SR ++ +SA+R+ KSRS R S +RP
Sbjct: 388 SPATKRGRSRSRTPTKR-----GHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPG 442
Query: 525 RSIAK---P*GRGRTASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARR 355
S ++ GR R+A R +H+RS G S AR G +R RR
Sbjct: 443 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSR--SRTPARRGRSRSRTP------ARRR 494
Query: 354 SQSSTDALQLT*ATPGTPWRRHRGLARPRRPARNYYRQGGSGRR 223
S+S T A + + TP R RG +R R PAR R RR
Sbjct: 495 SRSRTPARRR--SRSRTPAR--RGRSRSRTPARRRSRTRSPVRR 534
Score = 41.6 bits (96), Expect = 0.012
Identities = 44/151 (29%), Positives = 65/151 (42%), Gaps = 1/151 (0%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERPARSIAKP*GRGRT 490
SR+ +PA R++ + ++ R + ++ R +SRS T P RS + R R+
Sbjct: 485 SRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRT----PARRRSRTRSPVRRRSRSRS 540
Query: 489 ASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VAR-RSQSSTDALQLT*AT 313
+RR+ +RSR AR+ G R RS+S T A + +
Sbjct: 541 QARRSGRSRSRT----------------PARRSGRSRSRTPARRGRSRSRTPARRSARSR 584
Query: 312 PGTPWRRHRGLARPRRPARNYYRQGGSGRRG 220
TP R RG +R R PAR R RRG
Sbjct: 585 SRTPAR--RGRSRSRTPARRRSRSRSLVRRG 613
Score = 32.3 bits (72), Expect = 7.3
Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 15/175 (8%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSAR---RYRKSRSATRHCEPGSSERPARSIAKP*G- 502
SR+ R+ + HS+S + +S+R R R+ RS T P +S + +RS P
Sbjct: 1666 SRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRT----PLTSRKRSRSRTSPAPW 1721
Query: 501 -RGRTASRRATHARS---------RRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARRS 352
R R+ + ATH RS RR S S + +R+ + R+ + RRS
Sbjct: 1722 KRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSVNRRR-SRSRASPVSRRRS 1780
Query: 351 QSSTDALQLT*ATPGTPWRRH-RGLARPRRPARNYYRQGGSGRRGALTQPSGVER 190
+S T + + TP RR R P R+ R RR + ++ S V R
Sbjct: 1781 RSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPVTR 1835
>ref|NP_780438.1| RIKEN cDNA 5033413A03 [Mus musculus] gi|26354955|dbj|BAC41104.1|
unnamed protein product [Mus musculus]
Length = 2607
Score = 45.8 bits (107), Expect = 6e-04
Identities = 54/164 (32%), Positives = 74/164 (44%), Gaps = 7/164 (4%)
Frame = -2
Query: 693 APAAACPCSRAASPAPRQAAAAAHSKSR----QQLQSARRYRKSRSATRHCEPGSSERPA 526
+PA SR+ +P R HS+SR ++ +SA+R+ KSRS R S +RP
Sbjct: 388 SPATKRGRSRSRTPTKR-----GHSRSRSPQWRRSRSAQRWGKSRSPQRRGRSRSPQRPG 442
Query: 525 RSIAK---P*GRGRTASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARR 355
S ++ GR R+A R +H+RS G S AR G +R RR
Sbjct: 443 WSRSRNTQRRGRSRSARRGRSHSRSPATRGRSR--SRTPARRGRSRSRTP------ARRR 494
Query: 354 SQSSTDALQLT*ATPGTPWRRHRGLARPRRPARNYYRQGGSGRR 223
S+S T A + + TP R RG +R R P R R RR
Sbjct: 495 SRSRTPARRR--SRSRTPAR--RGRSRSRTPTRRRSRTRSPVRR 534
Score = 40.8 bits (94), Expect = 0.021
Identities = 44/151 (29%), Positives = 65/151 (42%), Gaps = 1/151 (0%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERPARSIAKP*GRGRT 490
SR+ +PA R++ + ++ R + ++ R +SRS T P RS + R R+
Sbjct: 485 SRSRTPARRRSRSRTPARRRSRSRTPARRGRSRSRT----PTRRRSRTRSPVRRRSRSRS 540
Query: 489 ASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VAR-RSQSSTDALQLT*AT 313
+RR+ +RSR AR+ G R RS+S T A + +
Sbjct: 541 QARRSGRSRSRT----------------PARRSGRSRSRTPARRGRSRSRTPARRSARSR 584
Query: 312 PGTPWRRHRGLARPRRPARNYYRQGGSGRRG 220
TP R RG +R R PAR R RRG
Sbjct: 585 SRTPAR--RGRSRSRTPARRRSRSRSLVRRG 613
Score = 32.3 bits (72), Expect = 7.3
Identities = 50/175 (28%), Positives = 75/175 (42%), Gaps = 15/175 (8%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSAR---RYRKSRSATRHCEPGSSERPARSIAKP*GR 499
SR+ R+ + HS+S + +S+R R R+ RS T P +S + +RS P
Sbjct: 1666 SRSRVTRRRRGGSGYHSRSPTRQESSRTSSRRRRGRSRT----PLTSRKRSRSRTSPAPW 1721
Query: 498 GRTASRR--ATHARS---------RRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARRS 352
R+ SR ATH RS RR S S + +R+ + R+ + RRS
Sbjct: 1722 KRSRSRASPATHRRSRSITPLISRRRSRSRTSPVSRRRSRSVNRRR-SRSRASPVSRRRS 1780
Query: 351 QSSTDALQLT*ATPGTPWRRH-RGLARPRRPARNYYRQGGSGRRGALTQPSGVER 190
+S T + + TP RR R P R+ R RR + ++ S V R
Sbjct: 1781 RSRTPPVTRRRSRSRTPTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPVTR 1835
>ref|NP_057417.2| splicing coactivator subunit SRm300; RNA binding protein; AT-rich
element binding factor [Homo sapiens]
gi|5821153|dbj|BAA83718.1| RNA binding protein [Homo
sapiens]
Length = 2752
Score = 43.5 bits (101), Expect = 0.003
Identities = 51/156 (32%), Positives = 71/156 (44%), Gaps = 7/156 (4%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSR----QQLQSARRYRKSRSATRHCEPGSSERPARSIAK--- 511
SR+ +P R HS+SR ++ +SA+R+ +SRS R S +RP S ++
Sbjct: 495 SRSRTPTKR-----GHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQ 549
Query: 510 P*GRGRTASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARRSQSSTDAL 331
GR R+A R +H+RS G S AR G +R RRS+S T
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSR--SRTPARRGRSRSRTP------ARRRSRSRTPTR 601
Query: 330 QLT*ATPGTPWRRHRGLARPRRPARNYYRQGGSGRR 223
+ + TP R RG +R R PAR R RR
Sbjct: 602 RR--SRSRTPAR--RGRSRSRTPARRRSRTRSPVRR 633
Score = 38.5 bits (88), Expect = 0.10
Identities = 45/152 (29%), Positives = 66/152 (42%), Gaps = 2/152 (1%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERPARSIAKP*GRGRT 490
SR+ +PA R++ + ++ R + ++ R +SRS T P RS + R R+
Sbjct: 584 SRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT----PARRRSRTRSPVRRRSRSRS 639
Query: 489 ASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VAR--RSQSSTDALQLT*A 316
+RR+ +RSR AR G +R AR RS+S T A + +
Sbjct: 640 PARRSGRSRSR-----------TPARRGRSRSRTP-------ARRGRSRSRTPARRSGRS 681
Query: 315 TPGTPWRRHRGLARPRRPARNYYRQGGSGRRG 220
TP R RG +R R P R R RRG
Sbjct: 682 RSRTPAR--RGRSRSRTPRRGRSRSRSLVRRG 711
Score = 34.3 bits (77), Expect = 1.9
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERP-ARSIAKP*GRGR 493
SR+ R+ + HS+S + +S+R + R P S +R +R+ P R R
Sbjct: 1806 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSR 1865
Query: 492 TASRRATHARS---------RRLHGVKS*CSAKIARAGSA--RQDGDDDVAD*VARRSQS 346
+ + ATH RS RR S S + +R+ ++ R+ + RRS+S
Sbjct: 1866 SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRS 1925
Query: 345 STDALQLT*ATPGTPWRRHRGLAR--PRRPARNYYRQGGSGRRGALTQPSGVER 190
T + + TP R R +R P R+ R RR + ++ S + R
Sbjct: 1926 RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITR 1979
>gb|AAF21439.1|AF201422_1 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2296
Score = 43.5 bits (101), Expect = 0.003
Identities = 51/156 (32%), Positives = 71/156 (44%), Gaps = 7/156 (4%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSR----QQLQSARRYRKSRSATRHCEPGSSERPARSIAK--- 511
SR+ +P R HS+SR ++ +SA+R+ +SRS R S +RP S ++
Sbjct: 495 SRSRTPTKR-----GHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQ 549
Query: 510 P*GRGRTASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARRSQSSTDAL 331
GR R+A R +H+RS G S AR G +R RRS+S T
Sbjct: 550 RRGRSRSARRGRSHSRSPATRGRSR--SRTPARRGRSRSRTP------ARRRSRSRTPTR 601
Query: 330 QLT*ATPGTPWRRHRGLARPRRPARNYYRQGGSGRR 223
+ + TP R RG +R R PAR R RR
Sbjct: 602 RR--SRSRTPAR--RGRSRSRTPARRRSRTRSPVRR 633
Score = 38.5 bits (88), Expect = 0.10
Identities = 45/152 (29%), Positives = 66/152 (42%), Gaps = 2/152 (1%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERPARSIAKP*GRGRT 490
SR+ +PA R++ + ++ R + ++ R +SRS T P RS + R R+
Sbjct: 584 SRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT----PARRRSRTRSPVRRRSRSRS 639
Query: 489 ASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VAR--RSQSSTDALQLT*A 316
+RR+ +RSR AR G +R AR RS+S T A + +
Sbjct: 640 PARRSGRSRSR-----------TPARRGRSRSRTP-------ARRGRSRSRTPARRSGRS 681
Query: 315 TPGTPWRRHRGLARPRRPARNYYRQGGSGRRG 220
TP R RG +R R P R R RRG
Sbjct: 682 RSRTPAR--RGRSRSRTPRRGRSRSRSLVRRG 711
Score = 34.3 bits (77), Expect = 1.9
Identities = 44/174 (25%), Positives = 73/174 (41%), Gaps = 14/174 (8%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERP-ARSIAKP*GRGR 493
SR+ R+ + HS+S + +S+R + R P S +R +R+ P R R
Sbjct: 1806 SRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSR 1865
Query: 492 TASRRATHARS---------RRLHGVKS*CSAKIARAGSA--RQDGDDDVAD*VARRSQS 346
+ + ATH RS RR S S + +R+ ++ R+ + RRS+S
Sbjct: 1866 SRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRS 1925
Query: 345 STDALQLT*ATPGTPWRRHRGLAR--PRRPARNYYRQGGSGRRGALTQPSGVER 190
T + + TP R R +R P R+ R RR + ++ S + R
Sbjct: 1926 RTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITR 1979
>dbj|BAA83713.1| RNA binding protein [Homo sapiens]
Length = 1262
Score = 43.5 bits (101), Expect = 0.003
Identities = 51/156 (32%), Positives = 71/156 (44%), Gaps = 7/156 (4%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSR----QQLQSARRYRKSRSATRHCEPGSSERPARSIAK--- 511
SR+ +P R HS+SR ++ +SA+R+ +SRS R S +RP S ++
Sbjct: 285 SRSRTPTKR-----GHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQ 339
Query: 510 P*GRGRTASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VARRSQSSTDAL 331
GR R+A R +H+RS G S AR G +R RRS+S T
Sbjct: 340 RRGRSRSARRGRSHSRSPATRGRSR--SRTPARRGRSRSRTP------ARRRSRSRTPTR 391
Query: 330 QLT*ATPGTPWRRHRGLARPRRPARNYYRQGGSGRR 223
+ + TP R RG +R R PAR R RR
Sbjct: 392 RR--SRSRTPAR--RGRSRSRTPARRRSRTRSPVRR 423
Score = 38.5 bits (88), Expect = 0.10
Identities = 45/152 (29%), Positives = 66/152 (42%), Gaps = 2/152 (1%)
Frame = -2
Query: 669 SRAASPAPRQAAAAAHSKSRQQLQSARRYRKSRSATRHCEPGSSERPARSIAKP*GRGRT 490
SR+ +PA R++ + ++ R + ++ R +SRS T P RS + R R+
Sbjct: 374 SRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRT----PARRRSRTRSPVRRRSRSRS 429
Query: 489 ASRRATHARSRRLHGVKS*CSAKIARAGSARQDGDDDVAD*VAR--RSQSSTDALQLT*A 316
+RR+ +RSR AR G +R AR RS+S T A + +
Sbjct: 430 PARRSGRSRSR-----------TPARRGRSRSRTP-------ARRGRSRSRTPARRSGRS 471
Query: 315 TPGTPWRRHRGLARPRRPARNYYRQGGSGRRG 220
TP R RG +R R P R R RRG
Sbjct: 472 RSRTPAR--RGRSRSRTPRRGRSRSRSLVRRG 501
