KCC001567A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001567A_C01 KCC001567A_c01
cttgCAACCACAATACATACTTTGTTCATTTCCACGAAGCCTGTCAAACTCAGTGTCAAA
CTCTTTGTTATCATCTGTACGCGTGCACTTGAGCGACTGTAAGCGGAACTGAGTGTATTT
AGCAAACTGCTGCTGATTAGGATTGTAGACAAGAGACCAGGCTCTCTGTCAGGCCGGGAC
CTTGCGAAGGCGGCATTTGTCTTCGGTGCGCTATAGGAAATGGAGGCGCCGCTTGTGCAA
ATAGACACCTCCATGGGCTCCTTCACAGTGGAGCTCTACTACAAGCACGCGCCAAGGACG
TGCAAAAACTTTGAGGAGTTGGCCAAAAAGGGATACTACGACGGCACCATTTTCCACCGA
ATCATCCGGGACTTCATGTGCCAGGGCGGCGACCCCACTGGCACGGGGCGCGGCGGCGAG
TCTATCTACGGCGGCAAGTTTGAGGACGAGATCACGCGTGACCTCAAGCACACCGGCGCC
GGCATCCTGTCCATGGCCAACTCAGGCCCCAACACCAACGGGAGTCAGTTCTTCGTCACG
CTCGCGCCCACACCATGGCTTGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001567A_C01 KCC001567A_c01
         (563 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_181157.1| cyclophilin-related protein [Arabidopsis thalia...   190  1e-47
gb|AAM61561.1| cyclophilin-like protein [Arabidopsis thaliana]        187  1e-46
dbj|BAB62328.1| cyclophilin [Oryza sativa (japonica cultivar-gro...   187  1e-46
sp|Q9NI62|CYPE_DICDI Peptidyl-prolyl cis-trans isomerase cypE (C...   183  1e-45
ref|XP_320182.1| ENSANGP00000011602 [Anopheles gambiae] gi|21287...   182  2e-45

>ref|NP_181157.1| cyclophilin-related protein [Arabidopsis thaliana]
           gi|25292501|pir||C84777 cyclophilin-like protein
           [imported] - Arabidopsis thaliana
           gi|4678225|gb|AAD26970.1| cyclophilin-like protein
           [Arabidopsis thaliana]
           gi|14488065|gb|AAK63853.1|AF389280_1 At2g36130/F9C22.6
           [Arabidopsis thaliana] gi|20857438|gb|AAM26720.1|
           At2g36130/F9C22.6 [Arabidopsis thaliana]
          Length = 164

 Score =  190 bits (483), Expect = 1e-47
 Identities = 85/115 (73%), Positives = 101/115 (86%)
 Frame = +1

Query: 217 EMEAPLVQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDP 396
           E   P V ++TSMG FTVE+YYKH+PRTC+NF EL+++GYYD  +FHRI++DF+ QGGDP
Sbjct: 6   EGSPPEVTLETSMGPFTVEMYYKHSPRTCRNFLELSRRGYYDNVLFHRIVKDFIVQGGDP 65

Query: 397 TGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWL 561
           TGTGRGGESIYG KFEDEI ++LKHTGAGILSMAN+GPNTNGSQFF+TLAP P L
Sbjct: 66  TGTGRGGESIYGSKFEDEINKELKHTGAGILSMANAGPNTNGSQFFITLAPQPSL 120

>gb|AAM61561.1| cyclophilin-like protein [Arabidopsis thaliana]
          Length = 164

 Score =  187 bits (474), Expect = 1e-46
 Identities = 84/115 (73%), Positives = 100/115 (86%)
 Frame = +1

Query: 217 EMEAPLVQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDP 396
           E   P V ++TSMG FTVE+YYKH+PRTC+NF EL+++GYYD  +FHRI++DF+ QGGDP
Sbjct: 6   EGSPPEVTLETSMGPFTVEMYYKHSPRTCRNFLELSRRGYYDNVLFHRIVKDFIVQGGDP 65

Query: 397 TGTGRGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWL 561
           TGTGRGGESIYG KFEDEI ++LKHTGA ILSMAN+GPNTNGSQFF+TLAP P L
Sbjct: 66  TGTGRGGESIYGSKFEDEINKELKHTGAVILSMANAGPNTNGSQFFITLAPQPSL 120

>dbj|BAB62328.1| cyclophilin [Oryza sativa (japonica cultivar-group)]
           gi|15076667|dbj|BAB62329.1| cyclophilin [Oryza sativa
           (japonica cultivar-group)]
          Length = 164

 Score =  187 bits (474), Expect = 1e-46
 Identities = 83/107 (77%), Positives = 98/107 (91%)
 Frame = +1

Query: 229 PLVQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDPTGTG 408
           P V ++TSMG+FT+E+YYKHAP+TC+NF EL+++GYYD  IFHRII+DF+ QGGDPTGTG
Sbjct: 10  PEVTLETSMGAFTIEMYYKHAPKTCRNFLELSRRGYYDNVIFHRIIKDFIVQGGDPTGTG 69

Query: 409 RGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAP 549
           RGGESIYG KFEDEI  +LKHTGAGILSMAN+GPNTNGSQFF+TLAP
Sbjct: 70  RGGESIYGAKFEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAP 116

>sp|Q9NI62|CYPE_DICDI Peptidyl-prolyl cis-trans isomerase cypE (Cyclophilin cypE)
           gi|6920001|gb|AAF28343.2|AF215865_1 cyclophilin E
           [Dictyostelium discoideum]
          Length = 156

 Score =  183 bits (465), Expect = 1e-45
 Identities = 82/114 (71%), Positives = 95/114 (82%)
 Frame = +1

Query: 220 MEAPLVQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDPT 399
           M    V + T++G  T+ELYY HAP+ CKNF EL+K+GYYD TIFHR+I+DFM QGGDP 
Sbjct: 1   MTEQTVTLQTTVGDITLELYYNHAPKACKNFYELSKRGYYDNTIFHRLIKDFMIQGGDPL 60

Query: 400 GTGRGGESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWL 561
           G GRGGESIYG KFEDEIT++LKHTGAGILSMANSG N+NGSQFF+T  PTPWL
Sbjct: 61  GNGRGGESIYGKKFEDEITKELKHTGAGILSMANSGVNSNGSQFFITFGPTPWL 114

>ref|XP_320182.1| ENSANGP00000011602 [Anopheles gambiae] gi|21287821|gb|EAA00142.1|
           ENSANGP00000011602 [Anopheles gambiae str. PEST]
          Length = 212

 Score =  182 bits (463), Expect = 2e-45
 Identities = 82/109 (75%), Positives = 94/109 (86%)
 Frame = +1

Query: 235 VQIDTSMGSFTVELYYKHAPRTCKNFEELAKKGYYDGTIFHRIIRDFMCQGGDPTGTGRG 414
           V  +T+MG  T+ELY+KHAP TC+NF ELA++GYY+GT FHRIIRDFM QGGDPTGTGRG
Sbjct: 59  VAFETTMGELTIELYWKHAPNTCRNFAELARRGYYNGTQFHRIIRDFMVQGGDPTGTGRG 118

Query: 415 GESIYGGKFEDEITRDLKHTGAGILSMANSGPNTNGSQFFVTLAPTPWL 561
           G+SIYG  F DEI  DLKHTGAGI+SMANSGP+TNGSQFF+TL PT WL
Sbjct: 119 GQSIYGATFADEIHSDLKHTGAGIVSMANSGPDTNGSQFFITLGPTQWL 167



EST assemble image


clone accession position
1 HC029c02_r AV634097 1 453
2 LC039g06_r AV621694 5 439
3 CM063d05_r AV390067 33 645




Chlamydomonas reinhardtii
Kazusa DNA Research Institute