KCC001550A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC001550A_C01 KCC001550A_c01
ctccatacggaactaGCAATTTGCACAGACGCGACCGCGGGCTCGTAGATGGCCCTTTAA
ACGAGTTGGGCCTGCAGAGTGTTCCCTGTAGCTGTAGGTAGATATCATGGCAGCCAAGCC
AGGTAGCGCAGGCGGTGCGGCCCCACCACCAGCGGCACCCGCGCCCCCGCCTGTGCTGGA
GAAAAAGACCCTCGCGGAGAGCCGGTTCCTTCGGTTCGTGAATGTGGACTACGCACGGCC
AGGGGACAATGCCAAGTCTTCATGGCAATACGTTGAGCGGACAACGCGAAGGGGCGACGT
AGATGCGGTGAACATTTTCGCGGTCCTGAAAAAGAAGGACGGCAACCACCAAGTTCTGGT
GGTGAAGCAGTACCGTCCTCCGATGGGAAAGCATACCATCGAGCTTCCAGCGGGTCTGGT
GGACAAGGACGAGTCGCCTCAGACGGCCGCGCTGCGCGAGCTGAAGGAGGAGACGGGCTA
CGTGGGCACCTTCATTGGCGCCACGGGCCAGCAGGCGCTCAGCCCGGGCCTGACCAAACG
AGAACATGGTCACCATCTTCGCCGAGATTGAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC001550A_C01 KCC001550A_c01
         (572 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_341560.1| similar to nudix (nucleoside diphosphate linked...    98  9e-20
ref|NP_058614.1| nudix (nucleoside diphosphate linked moiety X)-...    96  3e-19
gb|AAH04571.1| Nudix (nucleoside diphosphate linked moiety X)-ty...    95  8e-19
ref|NP_595387.1| nucleoside diphosphate-sugar hydrolase of the M...    94  2e-18
ref|NP_054861.2| nudix-type motif 5; nucleoside diphosphate link...    91  1e-17

>ref|XP_341560.1| similar to nudix (nucleoside diphosphate linked moiety X)-type
           motif 5 [Rattus norvegicus]
          Length = 219

 Score = 97.8 bits (242), Expect = 9e-20
 Identities = 48/127 (37%), Positives = 80/127 (62%), Gaps = 1/127 (0%)
 Frame = +2

Query: 158 PAPPPVLEKKTLAESRFLRFVNVDYARPGDNAKSSWQYVERTTRRG-DVDAVNIFAVLKK 334
           P    +L ++ ++E ++++F    Y  P    ++ W+ V+ TTR+G   DAV++  VL++
Sbjct: 12  PTEQRILSEELISEGKWVKFEKTTYMDPTGKTRT-WETVKLTTRKGKSADAVSVIPVLQR 70

Query: 335 KDGNHQVLVVKQYRPPMGKHTIELPAGLVDKDESPQTAALRELKEETGYVGTFIGATGQQ 514
              +  +++VKQ+RPPMG + +E PAGL++  ESP+ AALREL+EETGY G     +   
Sbjct: 71  TLHHECIVLVKQFRPPMGGYCLEFPAGLIEDGESPEAAALRELEEETGYKGDIAECSPAV 130

Query: 515 ALSPGLT 535
            + PGL+
Sbjct: 131 CMDPGLS 137

>ref|NP_058614.1| nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Mus
           musculus] gi|7271817|gb|AAF44630.1|AF222786_1 nudix
           hydrolase [Mus musculus] gi|26353180|dbj|BAC40220.1|
           unnamed protein product [Mus musculus]
           gi|29436910|gb|AAH49595.1| Nudt5 protein [Mus musculus]
          Length = 218

 Score = 95.9 bits (237), Expect = 3e-19
 Identities = 48/129 (37%), Positives = 80/129 (61%), Gaps = 1/129 (0%)
 Frame = +2

Query: 152 AAPAPPPVLEKKTLAESRFLRFVNVDYARPGDNAKSSWQYVERTTRRG-DVDAVNIFAVL 328
           ++P    V  ++ ++E ++++F    Y  P    ++ W+ V+ TTR+G   DAV++  VL
Sbjct: 9   SSPGKHLVTSEELISEGKWVKFEKTTYMDPTGKTRT-WETVKLTTRKGKSADAVSVIPVL 67

Query: 329 KKKDGNHQVLVVKQYRPPMGKHTIELPAGLVDKDESPQTAALRELKEETGYVGTFIGATG 508
           ++   +  V++VKQ+RPPMG + +E PAG ++  ESP+ AALREL+EETGY G     + 
Sbjct: 68  QRTLHHECVILVKQFRPPMGSYCLEFPAGFIEDGESPEAAALRELEEETGYKGEVAECSP 127

Query: 509 QQALSPGLT 535
              + PGL+
Sbjct: 128 AVCMDPGLS 136

>gb|AAH04571.1| Nudix (nucleoside diphosphate linked moiety X)-type motif 5 [Mus
           musculus]
          Length = 218

 Score = 94.7 bits (234), Expect = 8e-19
 Identities = 47/129 (36%), Positives = 80/129 (61%), Gaps = 1/129 (0%)
 Frame = +2

Query: 152 AAPAPPPVLEKKTLAESRFLRFVNVDYARPGDNAKSSWQYVERTTRRG-DVDAVNIFAVL 328
           ++P    V  ++ ++E ++++F    Y  P    ++ W+ V+ TTR+G   DAV++  VL
Sbjct: 9   SSPGKHLVTSEELISEGKWVKFEKTTYMDPTGKTRT-WETVKLTTRKGKSADAVSVIPVL 67

Query: 329 KKKDGNHQVLVVKQYRPPMGKHTIELPAGLVDKDESPQTAALRELKEETGYVGTFIGATG 508
           ++   +  V++VKQ+RPPMG + +E PAG ++  E+P+ AALREL+EETGY G     + 
Sbjct: 68  QRTLHHECVILVKQFRPPMGSYCLEFPAGFIEDGENPEAAALRELEEETGYKGEVAECSP 127

Query: 509 QQALSPGLT 535
              + PGL+
Sbjct: 128 AVCMDPGLS 136

>ref|NP_595387.1| nucleoside diphosphate-sugar hydrolase of the MutT (nudix) family
           [Schizosaccharomyces pombe] gi|7573205|emb|CAB87374.1|
           SPBP35G2.12 [Schizosaccharomyces pombe]
          Length = 205

 Score = 93.6 bits (231), Expect = 2e-18
 Identities = 51/92 (55%), Positives = 64/92 (69%), Gaps = 1/92 (1%)
 Frame = +2

Query: 263 WQYVERTTR-RGDVDAVNIFAVLKKKDGNHQVLVVKQYRPPMGKHTIELPAGLVDKDESP 439
           W+  ERTTR   +VDAV I A++   DG+  VL  KQ+RPP+GK  IE+PAGLVD  ES 
Sbjct: 40  WEMAERTTRSEANVDAVAILAIVPI-DGSPHVLCQKQFRPPIGKFCIEIPAGLVDSKESC 98

Query: 440 QTAALRELKEETGYVGTFIGATGQQALSPGLT 535
           + AA+REL+EETGYVGT + +T      PGLT
Sbjct: 99  EDAAIRELREETGYVGTVMDSTTVMYNDPGLT 130

>ref|NP_054861.2| nudix-type motif 5; nucleoside diphosphate linked moiety X-type
           motif 5 [Homo sapiens] gi|20455192|sp|Q9UKK9|NUD5_HUMAN
           ADP-sugar pyrophosphatase YSA1H (Nucleoside
           diphosphate-linked moiety X motif 5) (HSPC115)
           gi|6288769|gb|AAF06734.1|AF155832_1 adenosine
           5'-diphosphosugar pyrophosphatase [Homo sapiens]
           gi|6841452|gb|AAF29079.1|AF161464_1 HSPC115 [Homo
           sapiens] gi|12652567|gb|AAH00025.1| Nudix (nucleoside
           diphosphate linked moiety X)-type motif 5 [Homo sapiens]
          Length = 219

 Score = 90.5 bits (223), Expect = 1e-17
 Identities = 45/122 (36%), Positives = 75/122 (60%), Gaps = 1/122 (0%)
 Frame = +2

Query: 173 VLEKKTLAESRFLRFVNVDYARPGDNAKSSWQYVERTTRRGDV-DAVNIFAVLKKKDGNH 349
           ++ ++ ++E ++++     Y  P    ++ W+ V+RTTR+    D V +  VL++     
Sbjct: 17  IISEELISEGKWVKLEKTTYMDPTGKTRT-WESVKRTTRKEQTADGVAVIPVLQRTLHYE 75

Query: 350 QVLVVKQYRPPMGKHTIELPAGLVDKDESPQTAALRELKEETGYVGTFIGATGQQALSPG 529
            +++VKQ+RPPMG + IE PAGL+D  E+P+ AALREL+EETGY G     +    + PG
Sbjct: 76  CIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKGDIAECSPAVCMDPG 135

Query: 530 LT 535
           L+
Sbjct: 136 LS 137



EST assemble image


clone accession position
1 HCL057a04_r AV642736 1 431
2 CM061h02_r AV390572 9 572
3 HCL041c05_r AV641846 24 505




Chlamydomonas reinhardtii
Kazusa DNA Research Institute